Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:05:26 (1671973): wrapper (7.7.26015): starting
10:05:26 (1671973): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 10:05:26] Arguments: --nthreads 4
[2026-03-04 10:05:26] Threads: 4
[2026-03-04 10:05:26] Checking for CVMFS
[2026-03-04 10:05:26] No cvmfs_config command found, will try listing directly
[2026-03-04 10:05:26] CVMFS is ok
[2026-03-04 10:05:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 10:05:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 10:05:26] Further information can be found at the LHC@home message board.
[2026-03-04 10:05:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 10:05:26] Checking for apptainer binary...
[2026-03-04 10:05:26] which: no apptainer in ((null))
[2026-03-04 10:05:26] apptainer is not installed, using version from CVMFS
[2026-03-04 10:05:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 10:05:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot96/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-03-04 10:05:26] apptainer works
[2026-03-04 10:05:26] Set ATHENA_PROC_NUMBER=4
[2026-03-04 10:05:26] Set ATHENA_CORE_NUMBER=4
[2026-03-04 10:05:26] Starting ATLAS job with PandaID=7036136221
[2026-03-04 10:05:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot96/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 12:40:06]  *** The last 200 lines of the pilot log: ***
[2026-03-04 12:40:06] 2026-03-04 11:39:01,132 | INFO     | extracted standard info from prmon json
[2026-03-04 12:40:06] 2026-03-04 11:39:01,132 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 12:40:06] 2026-03-04 11:39:01,132 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 12:40:06] 2026-03-04 11:39:01,132 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 12:40:06] 2026-03-04 11:39:01,132 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 12:40:06] 2026-03-04 11:39:01,135 | INFO     | fitting pss+swap vs Time
[2026-03-04 12:40:06] 2026-03-04 11:39:01,136 | INFO     | sum of square deviations: 1067554900.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,137 | INFO     | sum of deviations: 10497692702.999998
[2026-03-04 12:40:06] 2026-03-04 11:39:01,137 | INFO     | mean x: 1772619746.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,137 | INFO     | mean y: 2312273.8344370862
[2026-03-04 12:40:06] 2026-03-04 11:39:01,137 | INFO     | intersect: -17428563995.646324
[2026-03-04 12:40:06] 2026-03-04 11:39:01,137 | INFO     | chi2: 1.978499668782391
[2026-03-04 12:40:06] 2026-03-04 11:39:01,137 | INFO     | sum of square deviations: 964976232.5
[2026-03-04 12:40:06] 2026-03-04 11:39:01,138 | INFO     | sum of deviations: 19340624284.500008
[2026-03-04 12:40:06] 2026-03-04 11:39:01,138 | INFO     | mean x: 1772619593.5
[2026-03-04 12:40:06] 2026-03-04 11:39:01,138 | INFO     | mean y: 2325040.51369863
[2026-03-04 12:40:06] 2026-03-04 11:39:01,138 | INFO     | intersect: -35525565080.0615
[2026-03-04 12:40:06] 2026-03-04 11:39:01,139 | INFO     | chi2: 1.1793691988822395
[2026-03-04 12:40:06] 2026-03-04 11:39:01,139 | INFO     | current chi2=1.1793691988822395 (change=40.39073053734463 %)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,139 | INFO     | sum of square deviations: 869188390.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,140 | INFO     | sum of deviations: 18593115370.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,140 | INFO     | mean x: 1772619441.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,140 | INFO     | mean y: 2323850.0780141843
[2026-03-04 12:40:06] 2026-03-04 11:39:01,140 | INFO     | intersect: -37916403727.05623
[2026-03-04 12:40:06] 2026-03-04 11:39:01,140 | INFO     | chi2: 1.180111474427081
[2026-03-04 12:40:06] 2026-03-04 11:39:01,140 | INFO     | current chi2=1.180111474427081 (change=-0.06293835259943457 %)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,140 | INFO     | right removable region: 140
[2026-03-04 12:40:06] 2026-03-04 11:39:01,141 | INFO     | sum of square deviations: 964976232.5
[2026-03-04 12:40:06] 2026-03-04 11:39:01,141 | INFO     | sum of deviations: -6420964950.500001
[2026-03-04 12:40:06] 2026-03-04 11:39:01,142 | INFO     | mean x: 1772619898.5
[2026-03-04 12:40:06] 2026-03-04 11:39:01,142 | INFO     | mean y: 2336969.102739726
[2026-03-04 12:40:06] 2026-03-04 11:39:01,142 | INFO     | intersect: 11797373836.839655
[2026-03-04 12:40:06] 2026-03-04 11:39:01,142 | INFO     | chi2: 0.8237151230368903
[2026-03-04 12:40:06] 2026-03-04 11:39:01,142 | INFO     | current chi2=0.8237151230368903 (change=58.36667874987205 %)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,142 | INFO     | sum of square deviations: 869188390.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,143 | INFO     | sum of deviations: -6079004410.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,143 | INFO     | mean x: 1772620051.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,143 | INFO     | mean y: 2336432.95035461
[2026-03-04 12:40:06] 2026-03-04 11:39:01,143 | INFO     | intersect: 12399838782.565754
[2026-03-04 12:40:06] 2026-03-04 11:39:01,144 | INFO     | chi2: 0.8235892451726156
[2026-03-04 12:40:06] 2026-03-04 11:39:01,144 | INFO     | current chi2=0.8235892451726156 (change=0.015281723104787752 %)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,144 | INFO     | left removable region: 20
[2026-03-04 12:40:06] 2026-03-04 11:39:01,144 | INFO     | sum of square deviations: 535786790.0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,144 | INFO     | sum of deviations: 1377283345.5000002
[2026-03-04 12:40:06] 2026-03-04 11:39:01,145 | INFO     | mean x: 1772620020.5
[2026-03-04 12:40:06] 2026-03-04 11:39:01,145 | INFO     | mean y: 2353051.591666667
[2026-03-04 12:40:06] 2026-03-04 11:39:01,145 | INFO     | intersect: -4554310303.49874
[2026-03-04 12:40:06] 2026-03-04 11:39:01,145 | INFO     | chi2: 0.0002599658593443794
[2026-03-04 12:40:06] 2026-03-04 11:39:01,145 | INFO     | current memory leak: 2.57 B/s (using 120 data points, chi2=0.00)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,145 | INFO     | could have reported an average CPU frequency of 2743 MHz (9 samples)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | ..............................
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | . Timing measurements:
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | . get job = 0 s
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | . initial setup = 7 s
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | . payload setup = 7 s
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | . stage-in = 0 s
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | . payload execution = 9169 s
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | . stage-out = 0 s
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | . log creation = 0 s
[2026-03-04 12:40:06] 2026-03-04 11:39:01,146 | INFO     | ..............................
[2026-03-04 12:40:06] 2026-03-04 11:39:01,239 | INFO     | 
[2026-03-04 12:40:06] 2026-03-04 11:39:01,239 | INFO     | job summary report
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | --------------------------------------------------
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | PanDA job id: 7036136221
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | task id: 48838581
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | errors: (none)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | pilot state: finished 
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | transexitcode: 0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | exeerrorcode: 0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | exeerrordiag: 
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | exitcode: 0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | exitmsg: OK
[2026-03-04 12:40:06] 2026-03-04 11:39:01,240 | INFO     | cpuconsumptiontime: 35185 s
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | nevents: 400
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | neventsw: 0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | pid: 1681169
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | pgrp: 1681169
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | corecount: 4
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | event service: False
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | sizes: {0: 2286846, 1: 2287108, 11: 2287136, 9181: 2315533, 9182: 2324609, 9184: 2324811}
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | --------------------------------------------------
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | 
[2026-03-04 12:40:06] 2026-03-04 11:39:01,241 | INFO     | executing command: ls -lF /scratch/boinc/var/slot96/slots/0
[2026-03-04 12:40:06] 2026-03-04 11:39:01,268 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,270 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 12:40:06] 2026-03-04 11:39:01,271 | INFO     | job 7036136221 has completed (purged errors)
[2026-03-04 12:40:06] 2026-03-04 11:39:01,271 | INFO     | overall cleanup function is called
[2026-03-04 12:40:06] 2026-03-04 11:39:02,279 | INFO     | --- collectZombieJob: --- 10, [1681169]
[2026-03-04 12:40:06] 2026-03-04 11:39:02,282 | INFO     | zombie collector waiting for pid 1681169
[2026-03-04 12:40:06] 2026-03-04 11:39:02,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 12:40:06] 2026-03-04 11:39:02,282 | INFO     | collected zombie processes
[2026-03-04 12:40:06] 2026-03-04 11:39:02,282 | INFO     | will attempt to kill all subprocesses of pid=1681169
[2026-03-04 12:40:06] 2026-03-04 11:39:02,854 | INFO     | process IDs to be killed: [1681169] (in reverse order)
[2026-03-04 12:40:06] 2026-03-04 11:39:03,081 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 12:40:06] 2026-03-04 11:39:03,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 12:40:06] 2026-03-04 11:39:03,127 | INFO     | did not find any defunct processes belonging to 1681169
[2026-03-04 12:40:06] 2026-03-04 11:39:03,163 | INFO     | did not find any defunct processes belonging to 1681169
[2026-03-04 12:40:06] 2026-03-04 11:39:03,163 | INFO     | ready for new job
[2026-03-04 12:40:06] 2026-03-04 11:39:03,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 12:40:06] 2026-03-04 11:39:03,166 | INFO     | **************************************
[2026-03-04 12:40:06] 2026-03-04 11:39:03,169 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 12:40:06] 2026-03-04 11:39:03,170 | INFO     | **************************************
[2026-03-04 12:40:06] 2026-03-04 11:39:03,170 | INFO     | 
[2026-03-04 12:40:06] 2026-03-04 11:39:03,180 | INFO     | architecture information:
[2026-03-04 12:40:06] 2026-03-04 11:39:03,180 | INFO     | executing command: cat /etc/os-release
[2026-03-04 12:40:06] 2026-03-04 11:39:03,202 | INFO     | cat /etc/os-release:
[2026-03-04 12:40:06] NAME="CentOS Linux"
[2026-03-04 12:40:06] VERSION="7 (Core)"
[2026-03-04 12:40:06] ID="centos"
[2026-03-04 12:40:06] ID_LIKE="rhel fedora"
[2026-03-04 12:40:06] VERSION_ID="7"
[2026-03-04 12:40:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 12:40:06] ANSI_COLOR="0;31"
[2026-03-04 12:40:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 12:40:06] HOME_URL="https://www.centos.org/"
[2026-03-04 12:40:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 12:40:06] 
[2026-03-04 12:40:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 12:40:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 12:40:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 12:40:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 12:40:06] 
[2026-03-04 12:40:06] 2026-03-04 11:39:03,203 | INFO     | **************************************
[2026-03-04 12:40:06] 2026-03-04 11:39:03,460 | WARNING  | process 1681169 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 12:40:06] 2026-03-04 11:39:03,706 | INFO     | executing command: df -mP /scratch/boinc/var/slot96/slots/0
[2026-03-04 12:40:06] 2026-03-04 11:39:03,732 | INFO     | sufficient remaining disk space (3312871014400 B)
[2026-03-04 12:40:06] 2026-03-04 11:39:03,732 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 12:40:06] 2026-03-04 11:39:03,732 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 12:40:06] 2026-03-04 11:39:03,732 | INFO     | update_server=False
[2026-03-04 12:40:06] 2026-03-04 11:39:03,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 12:40:06] 2026-03-04 11:39:03,873 | INFO     | using path: /scratch/boinc/var/slot96/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 12:40:06] 2026-03-04 11:39:04,091 | INFO     | all payload control threads have been joined
[2026-03-04 12:40:06] 2026-03-04 11:39:04,231 | INFO     | all data control threads have been joined
[2026-03-04 12:40:06] 2026-03-04 11:39:04,291 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 12:40:06] 2026-03-04 11:39:04,436 | INFO     | number of running child processes to parent process 1681169: 1
[2026-03-04 12:40:06] 2026-03-04 11:39:04,436 | INFO     | maximum number of monitored processes: 6
[2026-03-04 12:40:06] 2026-03-04 11:39:04,437 | INFO     | aborting job monitoring since job object (job id=7036136221) has expired
[2026-03-04 12:40:06] 2026-03-04 11:39:04,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 12:40:06] 2026-03-04 11:39:04,437 | INFO     | will abort loop
[2026-03-04 12:40:06] 2026-03-04 11:39:04,734 | INFO     | [job] retrieve thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:04,742 | INFO     | [job] validate thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:04,897 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,017 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,097 | INFO     | [payload] control thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,217 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,235 | INFO     | [data] control thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,256 | INFO     | all job control threads have been joined
[2026-03-04 12:40:06] 2026-03-04 11:39:05,402 | INFO     | [payload] validate_post thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,409 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,442 | INFO     | [job] job monitor thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 12:40:06] 2026-03-04 11:39:05,677 | INFO     | [data] copytool_in thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:05,867 | INFO     | [payload] failed_post thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:06,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 12:40:06] 2026-03-04 11:39:06,261 | INFO     | [job] control thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:06,296 | INFO     | [data] copytool_out thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:07,253 | INFO     | [job] queue monitor thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:09,655 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 12:40:06] 2026-03-04 11:39:33,768 | INFO     | PID=1676118 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 12:40:06] 2026-03-04 11:39:33,768 | INFO     | .. there are 19 such processes running
[2026-03-04 12:40:06] 2026-03-04 11:39:33,768 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 12:40:06] 2026-03-04 11:39:33,768 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 12:40:06] 2026-03-04 11:39:33,768 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 12:40:06] 2026-03-04 11:39:59,849 | INFO     | [monitor] cgroup control has ended
[2026-03-04 12:40:06] 2026-03-04 11:40:01,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23244978112320)>', '<ExcThread(monitor, started 23244741822208)>']
[2026-03-04 12:40:06] 2026-03-04 11:40:01,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 12:40:06] 2026-03-04 11:40:01,899 | INFO     | [monitor] control thread has ended
[2026-03-04 12:40:06] 2026-03-04 11:40:06,197 | INFO     | all workflow threads have been joined
[2026-03-04 12:40:06] 2026-03-04 11:40:06,198 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 12:40:06] 2026-03-04 11:40:06,198 | INFO     | traces error code: 0
[2026-03-04 12:40:06] 2026-03-04 11:40:06,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 12:40:06] 2026-03-04 11:40:06,326 [wrapper] ==== pilot stdout END ====
[2026-03-04 12:40:06] 2026-03-04 11:40:06,331 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 12:40:06] 2026-03-04 11:40:06,335 [wrapper] pilotpid: 1676118
[2026-03-04 12:40:06] 2026-03-04 11:40:06,339 [wrapper] Pilot exit status: 0
[2026-03-04 12:40:06] 2026-03-04 11:40:06,353 [wrapper] pandaids: 7036136221
[2026-03-04 12:40:06] 2026-03-04 11:40:06,493 [wrapper] cleanup supervisor_pilot 1917473 1676119
[2026-03-04 12:40:06] 2026-03-04 11:40:06,497 [wrapper] Test setup, not cleaning
[2026-03-04 12:40:06] 2026-03-04 11:40:06,501 [wrapper] apfmon messages muted
[2026-03-04 12:40:06] 2026-03-04 11:40:06,504 [wrapper] ==== wrapper stdout END ====
[2026-03-04 12:40:06] 2026-03-04 11:40:06,507 [wrapper] ==== wrapper stderr END ====
[2026-03-04 12:40:06]  *** Error codes and diagnostics ***
[2026-03-04 12:40:06]     "exeErrorCode": 0,
[2026-03-04 12:40:06]     "exeErrorDiag": "",
[2026-03-04 12:40:06]     "pilotErrorCode": 0,
[2026-03-04 12:40:06]     "pilotErrorDiag": "",
[2026-03-04 12:40:06]  *** Listing of results directory ***
[2026-03-04 12:40:06] total 505756
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc    584627 Mar  3 00:56 pilot3.tar.gz
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc      5111 Mar  3 00:57 queuedata.json
[2026-03-04 12:40:06] -rwx------ 1 boinc boinc     36322 Mar  3 00:58 runpilot2-wrapper.sh
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc       100 Mar  4 10:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 12:40:06] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 10:05 run_atlas
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc       105 Mar  4 10:05 job.xml
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc      6699 Mar  4 10:05 init_data.xml
[2026-03-04 12:40:06] -rw-r--r-- 2 boinc boinc 286441325 Mar  4 10:05 EVNT.48220205._000197.pool.root.1
[2026-03-04 12:40:06] -rw-r--r-- 2 boinc boinc     15845 Mar  4 10:05 start_atlas.sh
[2026-03-04 12:40:06] drwxrwx--x 2 boinc boinc      4096 Mar  4 10:05 shared
[2026-03-04 12:40:06] -rw-r--r-- 2 boinc boinc    597953 Mar  4 10:05 input.tar.gz
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc         0 Mar  4 10:05 boinc_lockfile
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc      2587 Mar  4 10:05 pandaJob.out
[2026-03-04 12:40:06] -rw------- 1 boinc boinc    997384 Mar  4 10:05 agis_schedconf.cvmfs.json
[2026-03-04 12:40:06] -rw------- 1 boinc boinc   1516092 Mar  4 10:05 agis_ddmendpoints.agis.ALL.json
[2026-03-04 12:40:06] -rw------- 1 boinc boinc       440 Mar  4 10:05 workernode_map.json
[2026-03-04 12:40:06] drwx------ 5 boinc boinc      4096 Mar  4 10:05 pilot3
[2026-03-04 12:40:06] -rw------- 1 boinc boinc 224296184 Mar  4 12:38 HITS.48838581._004682.pool.root.1
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc       530 Mar  4 12:38 boinc_task_state.xml
[2026-03-04 12:40:06] -rw------- 1 boinc boinc        95 Mar  4 12:38 pilot_heartbeat.json
[2026-03-04 12:40:06] -rw------- 1 boinc boinc      1023 Mar  4 12:38 memory_monitor_summary.json
[2026-03-04 12:40:06] -rw------- 1 boinc boinc    317960 Mar  4 12:38 log.48838581._004682.job.log.tgz.1
[2026-03-04 12:40:06] -rw------- 1 boinc boinc      6337 Mar  4 12:39 heartbeat.json
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc        27 Mar  4 12:40 wrapper_checkpoint.txt
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc      8192 Mar  4 12:40 boinc_mmap_file
[2026-03-04 12:40:06] -rw------- 1 boinc boinc      5363 Mar  4 12:40 pilotlog.txt
[2026-03-04 12:40:06] -rw------- 1 boinc boinc   1295879 Mar  4 12:40 log.48838581._004682.job.log.1
[2026-03-04 12:40:06] -rw------- 1 boinc boinc       357 Mar  4 12:40 output.list
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc       620 Mar  4 12:40 runtime_log
[2026-03-04 12:40:06] -rw------- 1 boinc boinc   1628160 Mar  4 12:40 result.tar.gz
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc      9204 Mar  4 12:40 runtime_log.err
[2026-03-04 12:40:06] -rw------- 1 boinc boinc       662 Mar  4 12:40 TTsMDmYKSH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm42CLDmMDiWEn.diag
[2026-03-04 12:40:06] -rw-r--r-- 1 boinc boinc     20845 Mar  4 12:40 stderr.txt
[2026-03-04 12:40:06] HITS file was successfully produced:
[2026-03-04 12:40:06] -rw------- 1 boinc boinc 224296184 Mar  4 12:38 shared/HITS.pool.root.1
[2026-03-04 12:40:06]  *** Contents of shared directory: ***
[2026-03-04 12:40:06] total 500968
[2026-03-04 12:40:06] -rw-r--r-- 2 boinc boinc 286441325 Mar  4 10:05 ATLAS.root_0
[2026-03-04 12:40:06] -rw-r--r-- 2 boinc boinc     15845 Mar  4 10:05 start_atlas.sh
[2026-03-04 12:40:06] -rw-r--r-- 2 boinc boinc    597953 Mar  4 10:05 input.tar.gz
[2026-03-04 12:40:06] -rw------- 1 boinc boinc 224296184 Mar  4 12:38 HITS.pool.root.1
[2026-03-04 12:40:06] -rw------- 1 boinc boinc   1628160 Mar  4 12:40 result.tar.gz
12:40:07 (1671973): run_atlas exited; CPU time 35666.864518
12:40:07 (1671973): called boinc_finish(0)

</stderr_txt>
]]>

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