Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:54:04 (288212): wrapper (7.7.26015): starting
12:54:04 (288212): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 12:54:04] Arguments: --nthreads 4
[2026-03-03 12:54:04] Threads: 4
[2026-03-03 12:54:04] Checking for CVMFS
[2026-03-03 12:54:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 12:54:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 12:54:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 12:54:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 12:54:05] 2.9.2.0 3060 1487 86984 156843 0 50 33417890 36864000 0 130560 0 801125 99.983 59476 17669 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 12:54:05] CVMFS is ok
[2026-03-03 12:54:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 12:54:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 12:54:05] Further information can be found at the LHC@home message board.
[2026-03-03 12:54:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 12:54:05] Checking for apptainer binary...
[2026-03-03 12:54:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 12:54:05] Running /usr/bin/apptainer --version
[2026-03-03 12:54:05] apptainer version 1.4.1-1.1
[2026-03-03 12:54:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 12:54:05] thA373a
[2026-03-03 12:54:05] apptainer works
[2026-03-03 12:54:05] Set ATHENA_PROC_NUMBER=4
[2026-03-03 12:54:05] Set ATHENA_CORE_NUMBER=4
[2026-03-03 12:54:05] Starting ATLAS job with PandaID=7036071011
[2026-03-03 12:54:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 15:06:33]  *** The last 200 lines of the pilot log: ***
[2026-03-03 15:06:33] 2026-03-03 14:05:39,034 | INFO     | collected zombie processes
[2026-03-03 15:06:33] 2026-03-03 14:05:39,034 | INFO     | will attempt to kill all subprocesses of pid=296840
[2026-03-03 15:06:33] 2026-03-03 14:05:39,074 | INFO     | process IDs to be killed: [296840] (in reverse order)
[2026-03-03 15:06:33] 2026-03-03 14:05:39,106 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 15:06:33] 2026-03-03 14:05:39,106 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 15:06:33] 2026-03-03 14:05:39,108 | INFO     | did not find any defunct processes belonging to 296840
[2026-03-03 15:06:33] 2026-03-03 14:05:39,109 | INFO     | did not find any defunct processes belonging to 296840
[2026-03-03 15:06:33] 2026-03-03 14:05:39,109 | INFO     | ready for new job
[2026-03-03 15:06:33] 2026-03-03 14:05:39,109 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 15:06:33] 2026-03-03 14:05:39,110 | INFO     | **************************************
[2026-03-03 15:06:33] 2026-03-03 14:05:39,110 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 15:06:33] 2026-03-03 14:05:39,110 | INFO     | **************************************
[2026-03-03 15:06:33] 2026-03-03 14:05:39,110 | INFO     | 
[2026-03-03 15:06:33] 2026-03-03 14:05:39,110 | INFO     | architecture information:
[2026-03-03 15:06:33] 2026-03-03 14:05:39,111 | INFO     | executing command: cat /etc/os-release
[2026-03-03 15:06:33] 2026-03-03 14:05:39,124 | INFO     | cat /etc/os-release:
[2026-03-03 15:06:33] NAME="CentOS Linux"
[2026-03-03 15:06:33] VERSION="7 (Core)"
[2026-03-03 15:06:33] ID="centos"
[2026-03-03 15:06:33] ID_LIKE="rhel fedora"
[2026-03-03 15:06:33] VERSION_ID="7"
[2026-03-03 15:06:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 15:06:33] ANSI_COLOR="0;31"
[2026-03-03 15:06:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 15:06:33] HOME_URL="https://www.centos.org/"
[2026-03-03 15:06:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 15:06:33] 
[2026-03-03 15:06:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 15:06:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 15:06:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 15:06:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 15:06:33] 
[2026-03-03 15:06:33] 2026-03-03 14:05:39,124 | INFO     | **************************************
[2026-03-03 15:06:33] 2026-03-03 14:05:39,627 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-03 15:06:33] 2026-03-03 14:05:39,644 | INFO     | sufficient remaining disk space (325690851328 B)
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | INFO     | update_server=False
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 15:06:33] 2026-03-03 14:05:39,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 15:06:33] 2026-03-03 14:05:39,756 | INFO     | all data control threads have been joined
[2026-03-03 15:06:33] 2026-03-03 14:05:40,062 | INFO     | all payload control threads have been joined
[2026-03-03 15:06:33] 2026-03-03 14:05:40,066 | INFO     | all job control threads have been joined
[2026-03-03 15:06:33] 2026-03-03 14:05:40,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 15:06:33] 2026-03-03 14:05:40,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 15:06:33] 2026-03-03 14:05:40,588 | INFO     | aborting loop
[2026-03-03 15:06:33] 2026-03-03 14:05:40,650 | INFO     | [job] queue monitor thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:40,650 | INFO     | [job] retrieve thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:40,761 | INFO     | [data] control thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:41,029 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 15:06:33] 2026-03-03 14:05:41,068 | INFO     | [payload] control thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:41,071 | INFO     | [job] control thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:41,152 | INFO     | [payload] validate_post thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:41,261 | INFO     | [job] validate thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:41,332 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:41,463 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:41,593 | INFO     | [job] job monitor thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:41,602 | INFO     | [data] copytool_in thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:42,121 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:42,220 | INFO     | [payload] failed_post thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:42,537 | INFO     | [data] copytool_out thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:45,036 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:05:49,871 | INFO     | job.realtimelogging is not enabled
[2026-03-03 15:06:33] 2026-03-03 14:05:50,877 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 15:06:33] 2026-03-03 14:06:26,721 | INFO     | [monitor] cgroup control has ended
[2026-03-03 15:06:33] 2026-03-03 14:06:27,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140583549142848)>', '<ExcThread(monitor, started 140583062464256)>']
[2026-03-03 15:06:33] 2026-03-03 14:06:28,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 15:06:33] 2026-03-03 14:06:28,899 | INFO     | [monitor] control thread has ended
[2026-03-03 15:06:33] 2026-03-03 14:06:33,025 | INFO     | all workflow threads have been joined
[2026-03-03 15:06:33] 2026-03-03 14:06:33,025 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 15:06:33] 2026-03-03 14:06:33,025 | INFO     | traces error code: 0
[2026-03-03 15:06:33] 2026-03-03 14:06:33,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 15:06:33] 2026-03-03 14:06:33,103 [wrapper] ==== pilot stdout END ====
[2026-03-03 15:06:33] 2026-03-03 14:06:33,107 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 15:06:33] 2026-03-03 14:06:33,111 [wrapper] pilotpid: 292319
[2026-03-03 15:06:33] 2026-03-03 14:06:33,114 [wrapper] Pilot exit status: 0
[2026-03-03 15:06:33] 2026-03-03 14:06:33,125 [wrapper] pandaids: 7036071011
[2026-03-03 15:06:33] 2026-03-03 14:06:33,147 [wrapper] cleanup supervisor_pilot  302781 292320
[2026-03-03 15:06:33] 2026-03-03 14:06:33,151 [wrapper] Test setup, not cleaning
[2026-03-03 15:06:33] 2026-03-03 14:06:33,154 [wrapper] apfmon messages muted
[2026-03-03 15:06:33] 2026-03-03 14:06:33,158 [wrapper] ==== wrapper stdout END ====
[2026-03-03 15:06:33] 2026-03-03 14:06:33,162 [wrapper] ==== wrapper stderr END ====
[2026-03-03 15:06:33]  *** Error codes and diagnostics ***
[2026-03-03 15:06:33]     "exeErrorCode": 0,
[2026-03-03 15:06:33]     "exeErrorDiag": "",
[2026-03-03 15:06:33]     "pilotErrorCode": 0,
[2026-03-03 15:06:33]     "pilotErrorDiag": "",
[2026-03-03 15:06:33]  *** Listing of results directory ***
[2026-03-03 15:06:33] total 415528
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc    584627 Mar  2 19:26 pilot3.tar.gz
[2026-03-03 15:06:33] -rwx------ 1 boinc boinc     36322 Mar  2 19:29 runpilot2-wrapper.sh
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc      5111 Mar  2 19:30 queuedata.json
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc       100 Mar  3 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 15:06:33] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 12:54 run_atlas
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc       105 Mar  3 12:54 job.xml
[2026-03-03 15:06:33] -rw-r--r-- 2 boinc boinc 219003667 Mar  3 12:54 EVNT.48458984._000003.pool.root.1
[2026-03-03 15:06:33] -rw-r--r-- 2 boinc boinc    597962 Mar  3 12:54 input.tar.gz
[2026-03-03 15:06:33] -rw-r--r-- 2 boinc boinc     15845 Mar  3 12:54 start_atlas.sh
[2026-03-03 15:06:33] drwxrwx--x 2 boinc boinc      4096 Mar  3 12:54 shared
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc         0 Mar  3 12:54 boinc_setup_complete
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc      6377 Mar  3 12:54 init_data.xml
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc         0 Mar  3 12:54 boinc_lockfile
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc      2620 Mar  3 12:54 pandaJob.out
[2026-03-03 15:06:33] -rw------- 1 boinc boinc    998442 Mar  3 12:54 agis_schedconf.cvmfs.json
[2026-03-03 15:06:33] -rw------- 1 boinc boinc   1516104 Mar  3 12:54 agis_ddmendpoints.agis.ALL.json
[2026-03-03 15:06:33] -rw------- 1 boinc boinc       420 Mar  3 12:54 workernode_map.json
[2026-03-03 15:06:33] drwx------ 5 boinc boinc      4096 Mar  3 12:54 pilot3
[2026-03-03 15:06:33] -rw------- 1 boinc boinc        95 Mar  3 15:04 pilot_heartbeat.json
[2026-03-03 15:06:33] -rw------- 1 boinc boinc 199692006 Mar  3 15:05 HITS.48850512._000066.pool.root.1
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc       529 Mar  3 15:05 boinc_task_state.xml
[2026-03-03 15:06:33] -rw------- 1 boinc boinc      1021 Mar  3 15:05 memory_monitor_summary.json
[2026-03-03 15:06:33] -rw------- 1 boinc boinc    314448 Mar  3 15:05 log.48850512._000066.job.log.tgz.1
[2026-03-03 15:06:33] -rw------- 1 boinc boinc      6289 Mar  3 15:05 heartbeat.json
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc      8192 Mar  3 15:06 boinc_mmap_file
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc        27 Mar  3 15:06 wrapper_checkpoint.txt
[2026-03-03 15:06:33] -rw------- 1 boinc boinc      4624 Mar  3 15:06 pilotlog.txt
[2026-03-03 15:06:33] -rw------- 1 boinc boinc   1130469 Mar  3 15:06 log.48850512._000066.job.log.1
[2026-03-03 15:06:33] -rw------- 1 boinc boinc       357 Mar  3 15:06 output.list
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc       620 Mar  3 15:06 runtime_log
[2026-03-03 15:06:33] -rw------- 1 boinc boinc   1464320 Mar  3 15:06 result.tar.gz
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc      8901 Mar  3 15:06 runtime_log.err
[2026-03-03 15:06:33] -rw------- 1 boinc boinc       658 Mar  3 15:06 GiTLDmkCNH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmzRCLDmIBrySm.diag
[2026-03-03 15:06:33] -rw-r--r-- 1 boinc boinc     10283 Mar  3 15:06 stderr.txt
[2026-03-03 15:06:33] HITS file was successfully produced:
[2026-03-03 15:06:33] -rw------- 1 boinc boinc 199692006 Mar  3 15:05 shared/HITS.pool.root.1
[2026-03-03 15:06:33]  *** Contents of shared directory: ***
[2026-03-03 15:06:33] total 410920
[2026-03-03 15:06:33] -rw-r--r-- 2 boinc boinc 219003667 Mar  3 12:54 ATLAS.root_0
[2026-03-03 15:06:33] -rw-r--r-- 2 boinc boinc    597962 Mar  3 12:54 input.tar.gz
[2026-03-03 15:06:33] -rw-r--r-- 2 boinc boinc     15845 Mar  3 12:54 start_atlas.sh
[2026-03-03 15:06:33] -rw------- 1 boinc boinc 199692006 Mar  3 15:05 HITS.pool.root.1
[2026-03-03 15:06:33] -rw------- 1 boinc boinc   1464320 Mar  3 15:06 result.tar.gz
15:06:34 (288212): run_atlas exited; CPU time 30374.390532
15:06:34 (288212): called boinc_finish(0)

</stderr_txt>
]]>

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