Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:52:30 (186822): wrapper (7.7.26015): starting
05:52:30 (186822): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 05:52:30] Arguments: --nthreads 4
[2026-03-04 05:52:30] Threads: 4
[2026-03-04 05:52:30] Checking for CVMFS
[2026-03-04 05:52:30] No cvmfs_config command found, will try listing directly
[2026-03-04 05:52:30] CVMFS is ok
[2026-03-04 05:52:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 05:52:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 05:52:30] Further information can be found at the LHC@home message board.
[2026-03-04 05:52:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 05:52:30] Checking for apptainer binary...
[2026-03-04 05:52:30] which: no apptainer in ((null))
[2026-03-04 05:52:30] apptainer is not installed, using version from CVMFS
[2026-03-04 05:52:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 05:52:30] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot224/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-04 05:52:30] apptainer works
[2026-03-04 05:52:30] Set ATHENA_PROC_NUMBER=4
[2026-03-04 05:52:30] Set ATHENA_CORE_NUMBER=4
[2026-03-04 05:52:30] Starting ATLAS job with PandaID=7036125850
[2026-03-04 05:52:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot224/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 07:24:58]  *** The last 200 lines of the pilot log: ***
[2026-03-04 07:24:58] ]
[2026-03-04 07:24:58] 2026-03-04 06:23:49,072 | INFO     | transferring file log.48838447._003819.job.log.tgz.1 from /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850/log.48838447._003819.job.log.tgz.1 to /var/lib/
[2026-03-04 07:24:58] 2026-03-04 06:23:49,072 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850/log.48838447._003819.job.log.tgz.1 /var/lib/boinc/var/slot224/slots/0/
[2026-03-04 07:24:58] 2026-03-04 06:23:49,088 | INFO     | adding to output.list: log.48838447._003819.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/76/log.48838447._003819.job.log.tg
[2026-03-04 07:24:58] 2026-03-04 06:23:49,089 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-04 07:24:58] 2026-03-04 06:23:49,089 | INFO     | summary of transferred files:
[2026-03-04 07:24:58] 2026-03-04 06:23:49,089 | INFO     |  -- lfn=log.48838447._003819.job.log.tgz.1, status_code=0, status=transferred
[2026-03-04 07:24:58] 2026-03-04 06:23:49,089 | INFO     | stage-out finished correctly
[2026-03-04 07:24:58] 2026-03-04 06:23:49,330 | INFO     | time since job start (5465s) is within the limit (349056.0s)
[2026-03-04 07:24:58] 2026-03-04 06:23:51,148 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-04 07:24:58] 2026-03-04 06:23:51,335 | INFO     | time since job start (5467s) is within the limit (349056.0s)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,260 | INFO     | job 7036125850 has state=finished
[2026-03-04 07:24:58] 2026-03-04 06:23:52,260 | INFO     | preparing for final server update for job 7036125850 in state='finished'
[2026-03-04 07:24:58] 2026-03-04 06:23:52,301 | WARNING  | process 237608 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 07:24:58] 2026-03-04 06:23:52,302 | INFO     | using path: /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,302 | INFO     | using path: /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,302 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-04 07:24:58] 2026-03-04 06:23:52,302 | WARNING  | maxPSS not found in memory monitor output
[2026-03-04 07:24:58] 2026-03-04 06:23:52,303 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1916205 B
[2026-03-04 07:24:58] 2026-03-04 06:23:52,303 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15365 B
[2026-03-04 07:24:58] 2026-03-04 06:23:52,303 | INFO     | executing command: df -mP /var/lib/boinc/var/slot224/slots/0
[2026-03-04 07:24:58] 2026-03-04 06:23:52,321 | INFO     | sufficient remaining disk space (21254635520 B)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,321 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,321 | INFO     | size of work directory /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850: 2246688 B (within 5033164800 B limit)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,322 | INFO     | pfn file=/var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850/HITS.48838447._003819.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,322 | INFO     | total size of present files: 0 B (workdir size: 2246688 B)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,322 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850/HITS.48838447._003819.pool.root.1 since it does not exist
[2026-03-04 07:24:58] 2026-03-04 06:23:52,786 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,787 | INFO     | reading metadata from: /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850/jobReport.json
[2026-03-04 07:24:58] 2026-03-04 06:23:52,788 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot224/slots/0/workernode_map.json
[2026-03-04 07:24:58] 2026-03-04 06:23:52,789 | INFO     | this job has now completed (state=finished)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,789 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,789 | INFO     | log transfer has been attempted: DONE
[2026-03-04 07:24:58] 2026-03-04 06:23:52,789 | INFO     | job 7036125850 has finished - writing final server update
[2026-03-04 07:24:58] 2026-03-04 06:23:52,789 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_815849/.job.ad'
[2026-03-04 07:24:58] 2026-03-04 06:23:52,789 | INFO     | total number of processed events: 400 (read)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,798 | INFO     | number of running child processes to parent process 237608: 1
[2026-03-04 07:24:58] 2026-03-04 06:23:52,798 | INFO     | maximum number of monitored processes: 6
[2026-03-04 07:24:58] 2026-03-04 06:23:52,814 | INFO     | using path: /var/lib/boinc/var/slot224/slots/0/PanDA_Pilot-7036125850/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,814 | INFO     | extracted standard info from prmon json
[2026-03-04 07:24:58] 2026-03-04 06:23:52,815 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 07:24:58] 2026-03-04 06:23:52,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 07:24:58] 2026-03-04 06:23:52,815 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 07:24:58] 2026-03-04 06:23:52,815 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 07:24:58] 2026-03-04 06:23:52,816 | INFO     | fitting pss+swap vs Time
[2026-03-04 07:24:58] 2026-03-04 06:23:52,816 | INFO     | sum of square deviations: 177275882.0
[2026-03-04 07:24:58] 2026-03-04 06:23:52,816 | INFO     | sum of deviations: 335418382.0
[2026-03-04 07:24:58] 2026-03-04 06:23:52,816 | INFO     | mean x: 1772602792.0
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | mean y: 2352459.7108433736
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | intersect: -3351536144.387725
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | chi2: 0.00048058839887973003
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | current memory leak: 1.89 B/s (using 83 data points, chi2=0.00)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | could have reported an average CPU frequency of 3597 MHz (7 samples)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | ..............................
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | . Timing measurements:
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | . get job = 0 s
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | . initial setup = 5 s
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | . payload setup = 5 s
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | . stage-in = 0 s
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | . payload execution = 5443 s
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | . stage-out = 0 s
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | . log creation = 0 s
[2026-03-04 07:24:58] 2026-03-04 06:23:52,817 | INFO     | ..............................
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | 
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | job summary report
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | --------------------------------------------------
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | PanDA job id: 7036125850
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | task id: 48838447
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | errors: (none)
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | pilot state: finished 
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | transexitcode: 0
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | exeerrorcode: 0
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | exeerrordiag: 
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | exitcode: 0
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | exitmsg: OK
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | cpuconsumptiontime: 21046 s
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | nevents: 400
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | neventsw: 0
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | pid: 237608
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | pgrp: 237608
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | corecount: 4
[2026-03-04 07:24:58] 2026-03-04 06:23:52,999 | INFO     | event service: False
[2026-03-04 07:24:58] 2026-03-04 06:23:53,000 | INFO     | sizes: {0: 2287089, 11: 2287089, 5452: 2313576, 5453: 2313575, 5454: 2322653, 5456: 2322709, 5458: 2323155}
[2026-03-04 07:24:58] 2026-03-04 06:23:53,000 | INFO     | --------------------------------------------------
[2026-03-04 07:24:58] 2026-03-04 06:23:53,000 | INFO     | 
[2026-03-04 07:24:58] 2026-03-04 06:23:53,000 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot224/slots/0
[2026-03-04 07:24:58] 2026-03-04 06:23:53,015 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,015 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,015 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | job 7036125850 has completed (purged errors)
[2026-03-04 07:24:58] 2026-03-04 06:23:53,016 | INFO     | overall cleanup function is called
[2026-03-04 07:24:58] 2026-03-04 06:23:54,023 | INFO     | --- collectZombieJob: --- 10, [237608]
[2026-03-04 07:24:58] 2026-03-04 06:23:54,023 | INFO     | zombie collector waiting for pid 237608
[2026-03-04 07:24:58] 2026-03-04 06:23:54,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 07:24:58] 2026-03-04 06:23:54,023 | INFO     | collected zombie processes
[2026-03-04 07:24:58] 2026-03-04 06:23:54,023 | INFO     | will attempt to kill all subprocesses of pid=237608
[2026-03-04 07:24:58] 2026-03-04 06:23:54,475 | INFO     | process IDs to be killed: [237608] (in reverse order)
[2026-03-04 07:24:58] 2026-03-04 06:23:54,705 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 07:24:58] 2026-03-04 06:23:54,705 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 07:24:58] 2026-03-04 06:23:54,733 | INFO     | did not find any defunct processes belonging to 237608
[2026-03-04 07:24:58] 2026-03-04 06:23:54,757 | INFO     | did not find any defunct processes belonging to 237608
[2026-03-04 07:24:58] 2026-03-04 06:23:54,757 | INFO     | ready for new job
[2026-03-04 07:24:58] 2026-03-04 06:23:54,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 07:24:58] 2026-03-04 06:23:54,758 | INFO     | **************************************
[2026-03-04 07:24:58] 2026-03-04 06:23:54,758 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 07:24:58] 2026-03-04 06:23:54,758 | INFO     | **************************************
[2026-03-04 07:24:58] 2026-03-04 06:23:54,758 | INFO     | 
[2026-03-04 07:24:58] 2026-03-04 06:23:54,763 | INFO     | architecture information:
[2026-03-04 07:24:58] 2026-03-04 06:23:54,764 | INFO     | executing command: cat /etc/os-release
[2026-03-04 07:24:58] 2026-03-04 06:23:54,780 | INFO     | cat /etc/os-release:
[2026-03-04 07:24:58] NAME="CentOS Linux"
[2026-03-04 07:24:58] VERSION="7 (Core)"
[2026-03-04 07:24:58] ID="centos"
[2026-03-04 07:24:58] ID_LIKE="rhel fedora"
[2026-03-04 07:24:58] VERSION_ID="7"
[2026-03-04 07:24:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 07:24:58] ANSI_COLOR="0;31"
[2026-03-04 07:24:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 07:24:58] HOME_URL="https://www.centos.org/"
[2026-03-04 07:24:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 07:24:58] 
[2026-03-04 07:24:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 07:24:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 07:24:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 07:24:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 07:24:58] 
[2026-03-04 07:24:58] 2026-03-04 06:23:54,780 | INFO     | **************************************
[2026-03-04 07:24:58] 2026-03-04 06:23:55,283 | INFO     | executing command: df -mP /var/lib/boinc/var/slot224/slots/0
[2026-03-04 07:24:58] 2026-03-04 06:23:55,298 | INFO     | sufficient remaining disk space (21251489792 B)
[2026-03-04 07:24:58] 2026-03-04 06:23:55,298 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 07:24:58] 2026-03-04 06:23:55,298 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 07:24:58] 2026-03-04 06:23:55,298 | INFO     | update_server=False
[2026-03-04 07:24:58] 2026-03-04 06:23:55,298 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 07:24:58] 2026-03-04 06:23:55,298 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 07:24:58] 2026-03-04 06:23:55,301 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-04 07:24:58] 2026-03-04 06:23:55,301 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-04 07:24:58] 2026-03-04 06:23:55,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 07:24:58] 2026-03-04 06:23:55,301 | INFO     | will abort loop
[2026-03-04 07:24:58] 2026-03-04 06:23:55,799 | INFO     | all payload control threads have been joined
[2026-03-04 07:24:58] 2026-03-04 06:23:56,102 | INFO     | all job control threads have been joined
[2026-03-04 07:24:58] 2026-03-04 06:23:56,107 | INFO     | all data control threads have been joined
[2026-03-04 07:24:58] 2026-03-04 06:23:56,303 | INFO     | [job] retrieve thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:56,306 | INFO     | [job] job monitor thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:56,398 | INFO     | [payload] failed_post thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:56,581 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:56,799 | INFO     | [payload] control thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,002 | INFO     | [payload] validate_post thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,107 | INFO     | [job] control thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,115 | INFO     | [data] control thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,200 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 07:24:58] 2026-03-04 06:23:57,227 | INFO     | [job] validate thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,304 | INFO     | [data] copytool_out thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,380 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,469 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,478 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,697 | INFO     | [data] copytool_in thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:23:57,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 07:24:58] 2026-03-04 06:23:58,879 | INFO     | [job] queue monitor thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:24:01,205 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 07:24:58] 2026-03-04 06:24:24,960 | INFO     | PID=204505 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-04 07:24:58] 2026-03-04 06:24:24,960 | INFO     | .. there are 44 such processes running
[2026-03-04 07:24:58] 2026-03-04 06:24:24,960 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 07:24:58] 2026-03-04 06:24:24,961 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 07:24:58] 2026-03-04 06:24:24,961 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 07:24:58] 2026-03-04 06:24:52,621 | INFO     | [monitor] cgroup control has ended
[2026-03-04 07:24:58] 2026-03-04 06:24:53,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22455848425280)>', '<ExcThread(monitor, started 22455608682240)>']
[2026-03-04 07:24:58] 2026-03-04 06:24:54,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 07:24:58] 2026-03-04 06:24:54,107 | INFO     | [monitor] control thread has ended
[2026-03-04 07:24:58] 2026-03-04 06:24:58,421 | INFO     | all workflow threads have been joined
[2026-03-04 07:24:58] 2026-03-04 06:24:58,421 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 07:24:58] 2026-03-04 06:24:58,421 | INFO     | traces error code: 0
[2026-03-04 07:24:58] 2026-03-04 06:24:58,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 07:24:58] 2026-03-04 06:24:58,636 [wrapper] ==== pilot stdout END ====
[2026-03-04 07:24:58] 2026-03-04 06:24:58,638 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 07:24:58] 2026-03-04 06:24:58,640 [wrapper] pilotpid: 204505
[2026-03-04 07:24:58] 2026-03-04 06:24:58,642 [wrapper] Pilot exit status: 0
[2026-03-04 07:24:58] 2026-03-04 06:24:58,650 [wrapper] pandaids: 7036125850
[2026-03-04 07:24:58] 2026-03-04 06:24:58,780 [wrapper] cleanup supervisor_pilot 1053522 204506
[2026-03-04 07:24:58] 2026-03-04 06:24:58,783 [wrapper] Test setup, not cleaning
[2026-03-04 07:24:58] 2026-03-04 06:24:58,786 [wrapper] apfmon messages muted
[2026-03-04 07:24:58] 2026-03-04 06:24:58,788 [wrapper] ==== wrapper stdout END ====
[2026-03-04 07:24:58] 2026-03-04 06:24:58,790 [wrapper] ==== wrapper stderr END ====
[2026-03-04 07:24:58]  *** Error codes and diagnostics ***
[2026-03-04 07:24:58]     "exeErrorCode": 0,
[2026-03-04 07:24:58]     "exeErrorDiag": "",
[2026-03-04 07:24:58]     "pilotErrorCode": 0,
[2026-03-04 07:24:58]     "pilotErrorDiag": "",
[2026-03-04 07:24:58]  *** Listing of results directory ***
[2026-03-04 07:24:58] total 485588
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc    584627 Mar  2 23:33 pilot3.tar.gz
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc      5111 Mar  2 23:33 queuedata.json
[2026-03-04 07:24:58] -rwx------. 1 boinc boinc     36322 Mar  2 23:33 runpilot2-wrapper.sh
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc       100 Mar  4 05:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 07:24:58] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 05:52 run_atlas
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc       105 Mar  4 05:52 job.xml
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc      6708 Mar  4 05:52 init_data.xml
[2026-03-04 07:24:58] -rw-r--r--. 2 boinc boinc 280412056 Mar  4 05:52 EVNT.48220117._000158.pool.root.1
[2026-03-04 07:24:58] -rw-r--r--. 2 boinc boinc     15845 Mar  4 05:52 start_atlas.sh
[2026-03-04 07:24:58] drwxrwx--x. 2 boinc boinc      4096 Mar  4 05:52 shared
[2026-03-04 07:24:58] -rw-r--r--. 2 boinc boinc    597963 Mar  4 05:52 input.tar.gz
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc         0 Mar  4 05:52 boinc_lockfile
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc      2569 Mar  4 05:52 pandaJob.out
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc    997749 Mar  4 05:52 agis_schedconf.cvmfs.json
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc   1516092 Mar  4 05:52 agis_ddmendpoints.agis.ALL.json
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc       444 Mar  4 05:52 workernode_map.json
[2026-03-04 07:24:58] drwx------. 5 boinc boinc      4096 Mar  4 05:52 pilot3
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc       529 Mar  4 07:23 boinc_task_state.xml
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc 210784294 Mar  4 07:23 HITS.48838447._003819.pool.root.1
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc      1030 Mar  4 07:23 memory_monitor_summary.json
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc    261473 Mar  4 07:23 log.48838447._003819.job.log.tgz.1
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc      6352 Mar  4 07:23 heartbeat.json
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc        95 Mar  4 07:24 pilot_heartbeat.json
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc      8192 Mar  4 07:24 boinc_mmap_file
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc        27 Mar  4 07:24 wrapper_checkpoint.txt
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc      5015 Mar  4 07:24 pilotlog.txt
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc    794354 Mar  4 07:24 log.48838447._003819.job.log.1
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc       357 Mar  4 07:24 output.list
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc       620 Mar  4 07:24 runtime_log
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc   1075200 Mar  4 07:24 result.tar.gz
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc       662 Mar  4 07:24 sH5LDmL0QH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmXoELDmn674Fm.diag
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc      9221 Mar  4 07:24 runtime_log.err
[2026-03-04 07:24:58] -rw-r--r--. 1 boinc boinc     22596 Mar  4 07:24 stderr.txt
[2026-03-04 07:24:58] HITS file was successfully produced:
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc 210784294 Mar  4 07:23 shared/HITS.pool.root.1
[2026-03-04 07:24:58]  *** Contents of shared directory: ***
[2026-03-04 07:24:58] total 481348
[2026-03-04 07:24:58] -rw-r--r--. 2 boinc boinc 280412056 Mar  4 05:52 ATLAS.root_0
[2026-03-04 07:24:58] -rw-r--r--. 2 boinc boinc     15845 Mar  4 05:52 start_atlas.sh
[2026-03-04 07:24:58] -rw-r--r--. 2 boinc boinc    597963 Mar  4 05:52 input.tar.gz
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc 210784294 Mar  4 07:23 HITS.pool.root.1
[2026-03-04 07:24:58] -rw-------. 1 boinc boinc   1075200 Mar  4 07:24 result.tar.gz
07:25:00 (186822): run_atlas exited; CPU time 21301.842732
07:25:00 (186822): called boinc_finish(0)

</stderr_txt>
]]>

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