Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:17:54 (3584247): wrapper (7.7.26015): starting
17:17:54 (3584247): wrapper: running run_atlas (--nthreads 3)
[2026-03-03 17:17:54] Arguments: --nthreads 3
[2026-03-03 17:17:54] Threads: 3
[2026-03-03 17:17:54] Checking for CVMFS
[2026-03-03 17:17:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 17:17:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 17:17:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 17:17:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 17:17:55] 2.9.2.0 2437992 8695 85040 156851 0 49 28572434 36864000 0 130560 0 3227831 99.980 335918 15536 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 17:17:55] CVMFS is ok
[2026-03-03 17:17:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 17:17:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 17:17:55] Further information can be found at the LHC@home message board.
[2026-03-03 17:17:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 17:17:55] Checking for apptainer binary...
[2026-03-03 17:17:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 17:17:55] Running /usr/bin/apptainer --version
[2026-03-03 17:17:55] apptainer version 1.4.1-1.1
[2026-03-03 17:17:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 17:17:55] atlasA303a
[2026-03-03 17:17:55] apptainer works
[2026-03-03 17:17:55] Set ATHENA_PROC_NUMBER=3
[2026-03-03 17:17:55] Set ATHENA_CORE_NUMBER=3
[2026-03-03 17:17:55] Starting ATLAS job with PandaID=7036071799
[2026-03-03 17:17:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 19:33:20]  *** The last 200 lines of the pilot log: ***
[2026-03-03 19:33:20] 2026-03-03 18:32:25,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 19:33:20] 2026-03-03 18:32:25,629 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 19:33:20] 2026-03-03 18:32:25,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 19:33:20] 2026-03-03 18:32:25,629 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 19:33:20] 2026-03-03 18:32:25,629 | INFO     | job 7036071799 has completed (purged errors)
[2026-03-03 19:33:20] 2026-03-03 18:32:25,629 | INFO     | overall cleanup function is called
[2026-03-03 19:33:20] 2026-03-03 18:32:26,635 | INFO     | --- collectZombieJob: --- 10, [3592718]
[2026-03-03 19:33:20] 2026-03-03 18:32:26,636 | INFO     | zombie collector waiting for pid 3592718
[2026-03-03 19:33:20] 2026-03-03 18:32:26,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 19:33:20] 2026-03-03 18:32:26,636 | INFO     | collected zombie processes
[2026-03-03 19:33:20] 2026-03-03 18:32:26,636 | INFO     | will attempt to kill all subprocesses of pid=3592718
[2026-03-03 19:33:20] 2026-03-03 18:32:26,675 | INFO     | process IDs to be killed: [3592718] (in reverse order)
[2026-03-03 19:33:20] 2026-03-03 18:32:26,700 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 19:33:20] 2026-03-03 18:32:26,700 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 19:33:20] 2026-03-03 18:32:26,702 | INFO     | did not find any defunct processes belonging to 3592718
[2026-03-03 19:33:20] 2026-03-03 18:32:26,702 | INFO     | did not find any defunct processes belonging to 3592718
[2026-03-03 19:33:20] 2026-03-03 18:32:26,703 | INFO     | ready for new job
[2026-03-03 19:33:20] 2026-03-03 18:32:26,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 19:33:20] 2026-03-03 18:32:26,703 | INFO     | **************************************
[2026-03-03 19:33:20] 2026-03-03 18:32:26,703 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 19:33:20] 2026-03-03 18:32:26,703 | INFO     | **************************************
[2026-03-03 19:33:20] 2026-03-03 18:32:26,703 | INFO     | 
[2026-03-03 19:33:20] 2026-03-03 18:32:26,704 | INFO     | architecture information:
[2026-03-03 19:33:20] 2026-03-03 18:32:26,704 | INFO     | executing command: cat /etc/os-release
[2026-03-03 19:33:20] 2026-03-03 18:32:26,713 | INFO     | cat /etc/os-release:
[2026-03-03 19:33:20] NAME="CentOS Linux"
[2026-03-03 19:33:20] VERSION="7 (Core)"
[2026-03-03 19:33:20] ID="centos"
[2026-03-03 19:33:20] ID_LIKE="rhel fedora"
[2026-03-03 19:33:20] VERSION_ID="7"
[2026-03-03 19:33:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 19:33:20] ANSI_COLOR="0;31"
[2026-03-03 19:33:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 19:33:20] HOME_URL="https://www.centos.org/"
[2026-03-03 19:33:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 19:33:20] 
[2026-03-03 19:33:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 19:33:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 19:33:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 19:33:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 19:33:20] 
[2026-03-03 19:33:20] 2026-03-03 18:32:26,714 | INFO     | **************************************
[2026-03-03 19:33:20] 2026-03-03 18:32:27,217 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-03 19:33:20] 2026-03-03 18:32:27,230 | INFO     | sufficient remaining disk space (375631380480 B)
[2026-03-03 19:33:20] 2026-03-03 18:32:27,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 19:33:20] 2026-03-03 18:32:27,231 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 19:33:20] 2026-03-03 18:32:27,231 | INFO     | update_server=False
[2026-03-03 19:33:20] 2026-03-03 18:32:27,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 19:33:20] 2026-03-03 18:32:27,231 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 19:33:20] 2026-03-03 18:32:27,231 | INFO     | aborting loop
[2026-03-03 19:33:20] 2026-03-03 18:32:27,231 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 19:33:20] 2026-03-03 18:32:27,673 | INFO     | all job control threads have been joined
[2026-03-03 19:33:20] 2026-03-03 18:32:27,828 | INFO     | all payload control threads have been joined
[2026-03-03 19:33:20] 2026-03-03 18:32:27,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 19:33:20] 2026-03-03 18:32:27,969 | INFO     | all data control threads have been joined
[2026-03-03 19:33:20] 2026-03-03 18:32:28,236 | INFO     | [job] job monitor thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:28,237 | INFO     | [job] retrieve thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:28,237 | INFO     | [job] queue monitor thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:28,303 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:28,346 | INFO     | [payload] validate_post thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:28,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 19:33:20] 2026-03-03 18:32:28,679 | INFO     | [job] control thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:28,834 | INFO     | [payload] control thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:28,938 | INFO     | [job] validate thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:28,975 | INFO     | [data] control thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:29,034 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:29,064 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:29,117 | INFO     | [payload] failed_post thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:29,144 | INFO     | [data] copytool_in thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:29,320 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:29,944 | INFO     | [data] copytool_out thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:32,653 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 19:33:20] 2026-03-03 18:32:57,738 | INFO     | PID=3588289 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 19:33:20] 2026-03-03 18:32:57,739 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 19:33:20] 2026-03-03 18:32:57,739 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 19:33:20] 2026-03-03 18:32:57,739 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 19:33:20] 2026-03-03 18:33:01,079 [wrapper] supervise_pilot (15 min periods counter: 10)
[2026-03-03 19:33:20] 2026-03-03 18:33:13,626 | INFO     | [monitor] cgroup control has ended
[2026-03-03 19:33:20] 2026-03-03 18:33:15,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346997790528)>', '<ExcThread(monitor, started 140346369500928)>']
[2026-03-03 19:33:20] 2026-03-03 18:33:15,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 19:33:20] 2026-03-03 18:33:15,836 | INFO     | [monitor] control thread has ended
[2026-03-03 19:33:20] 2026-03-03 18:33:20,628 | INFO     | all workflow threads have been joined
[2026-03-03 19:33:20] 2026-03-03 18:33:20,628 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 19:33:20] 2026-03-03 18:33:20,628 | INFO     | traces error code: 0
[2026-03-03 19:33:20] 2026-03-03 18:33:20,629 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 19:33:20] 2026-03-03 18:33:20,677 [wrapper] ==== pilot stdout END ====
[2026-03-03 19:33:20] 2026-03-03 18:33:20,679 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 19:33:20] 2026-03-03 18:33:20,682 [wrapper] pilotpid: 3588289
[2026-03-03 19:33:20] 2026-03-03 18:33:20,684 [wrapper] Pilot exit status: 0
[2026-03-03 19:33:20] 2026-03-03 18:33:20,692 [wrapper] pandaids: 7036071799
[2026-03-03 19:33:20] 2026-03-03 18:33:20,710 [wrapper] cleanup supervisor_pilot 3598692 3588290
[2026-03-03 19:33:20] 2026-03-03 18:33:20,712 [wrapper] Test setup, not cleaning
[2026-03-03 19:33:20] 2026-03-03 18:33:20,715 [wrapper] apfmon messages muted
[2026-03-03 19:33:20] 2026-03-03 18:33:20,717 [wrapper] ==== wrapper stdout END ====
[2026-03-03 19:33:20] 2026-03-03 18:33:20,719 [wrapper] ==== wrapper stderr END ====
[2026-03-03 19:33:20]  *** Error codes and diagnostics ***
[2026-03-03 19:33:20]     "exeErrorCode": 0,
[2026-03-03 19:33:20]     "exeErrorDiag": "",
[2026-03-03 19:33:20]     "pilotErrorCode": 0,
[2026-03-03 19:33:20]     "pilotErrorDiag": "",
[2026-03-03 19:33:20]  *** Listing of results directory ***
[2026-03-03 19:33:20] total 478080
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc      5111 Mar  2 19:26 queuedata.json
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc    584627 Mar  2 19:26 pilot3.tar.gz
[2026-03-03 19:33:20] -rwx------ 1 boinc boinc     36322 Mar  2 19:27 runpilot2-wrapper.sh
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc       100 Mar  3 17:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 19:33:20] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 17:17 run_atlas
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc       105 Mar  3 17:17 job.xml
[2026-03-03 19:33:20] -rw-r--r-- 2 boinc boinc 254961791 Mar  3 17:17 EVNT.48459684._000001.pool.root.1
[2026-03-03 19:33:20] -rw-r--r-- 2 boinc boinc    597949 Mar  3 17:17 input.tar.gz
[2026-03-03 19:33:20] -rw-r--r-- 2 boinc boinc     15845 Mar  3 17:17 start_atlas.sh
[2026-03-03 19:33:20] drwxrwx--x 2 boinc boinc      4096 Mar  3 17:17 shared
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc         0 Mar  3 17:17 boinc_setup_complete
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc      6450 Mar  3 17:17 init_data.xml
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc         0 Mar  3 17:17 boinc_lockfile
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc      2621 Mar  3 17:17 pandaJob.out
[2026-03-03 19:33:20] -rw------- 1 boinc boinc    998516 Mar  3 17:18 agis_schedconf.cvmfs.json
[2026-03-03 19:33:20] -rw------- 1 boinc boinc   1516092 Mar  3 17:18 agis_ddmendpoints.agis.ALL.json
[2026-03-03 19:33:20] -rw------- 1 boinc boinc       427 Mar  3 17:18 workernode_map.json
[2026-03-03 19:33:20] drwx------ 5 boinc boinc      4096 Mar  3 17:18 pilot3
[2026-03-03 19:33:20] -rw------- 1 boinc boinc 227781585 Mar  3 19:32 HITS.48851103._000005.pool.root.1
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc       529 Mar  3 19:32 boinc_task_state.xml
[2026-03-03 19:33:20] -rw------- 1 boinc boinc      1018 Mar  3 19:32 memory_monitor_summary.json
[2026-03-03 19:33:20] -rw------- 1 boinc boinc    288483 Mar  3 19:32 log.48851103._000005.job.log.tgz.1
[2026-03-03 19:33:20] -rw------- 1 boinc boinc      6299 Mar  3 19:32 heartbeat.json
[2026-03-03 19:33:20] -rw------- 1 boinc boinc        95 Mar  3 19:32 pilot_heartbeat.json
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc      8192 Mar  3 19:33 boinc_mmap_file
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc        27 Mar  3 19:33 wrapper_checkpoint.txt
[2026-03-03 19:33:20] -rw------- 1 boinc boinc      4748 Mar  3 19:33 pilotlog.txt
[2026-03-03 19:33:20] -rw------- 1 boinc boinc   1154614 Mar  3 19:33 log.48851103._000005.job.log.1
[2026-03-03 19:33:20] -rw------- 1 boinc boinc       357 Mar  3 19:33 output.list
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc       620 Mar  3 19:33 runtime_log
[2026-03-03 19:33:20] -rw------- 1 boinc boinc   1464320 Mar  3 19:33 result.tar.gz
[2026-03-03 19:33:20] -rw------- 1 boinc boinc       661 Mar  3 19:33 yWkLDm39MH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmBQCLDmBgaBBo.diag
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc      8916 Mar  3 19:33 runtime_log.err
[2026-03-03 19:33:20] -rw-r--r-- 1 boinc boinc     11315 Mar  3 19:33 stderr.txt
[2026-03-03 19:33:20] HITS file was successfully produced:
[2026-03-03 19:33:20] -rw------- 1 boinc boinc 227781585 Mar  3 19:32 shared/HITS.pool.root.1
[2026-03-03 19:33:20]  *** Contents of shared directory: ***
[2026-03-03 19:33:20] total 473472
[2026-03-03 19:33:20] -rw-r--r-- 2 boinc boinc 254961791 Mar  3 17:17 ATLAS.root_0
[2026-03-03 19:33:20] -rw-r--r-- 2 boinc boinc    597949 Mar  3 17:17 input.tar.gz
[2026-03-03 19:33:20] -rw-r--r-- 2 boinc boinc     15845 Mar  3 17:17 start_atlas.sh
[2026-03-03 19:33:20] -rw------- 1 boinc boinc 227781585 Mar  3 19:32 HITS.pool.root.1
[2026-03-03 19:33:20] -rw------- 1 boinc boinc   1464320 Mar  3 19:33 result.tar.gz
19:33:22 (3584247): run_atlas exited; CPU time 23375.334214
19:33:22 (3584247): called boinc_finish(0)

</stderr_txt>
]]>

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