Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:49:44 (1196098): wrapper (7.7.26015): starting
02:49:44 (1196098): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 02:49:44] Arguments: --nthreads 3
[2026-03-04 02:49:44] Threads: 3
[2026-03-04 02:49:44] Checking for CVMFS
[2026-03-04 02:49:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 02:49:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 02:49:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 02:49:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 02:49:44] 2.9.2.0 46214 9170 85708 156864 2 50 23104685 36864001 0 130560 0 3235323 99.980 343658 14891 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 02:49:44] CVMFS is ok
[2026-03-04 02:49:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 02:49:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 02:49:44] Further information can be found at the LHC@home message board.
[2026-03-04 02:49:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 02:49:44] Checking for apptainer binary...
[2026-03-04 02:49:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 02:49:44] Running /usr/bin/apptainer --version
[2026-03-04 02:49:44] apptainer version 1.4.1-1.1
[2026-03-04 02:49:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 02:49:44] thA325a
[2026-03-04 02:49:44] apptainer works
[2026-03-04 02:49:44] Set ATHENA_PROC_NUMBER=3
[2026-03-04 02:49:44] Set ATHENA_CORE_NUMBER=3
[2026-03-04 02:49:44] Starting ATLAS job with PandaID=7033784794
[2026-03-04 02:49:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 06:08:25]  *** The last 200 lines of the pilot log: ***
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,618 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 06:08:25] 2026-03-04 05:07:53,619 | INFO     | job 7033784794 has completed (purged errors)
[2026-03-04 06:08:25] 2026-03-04 05:07:53,619 | INFO     | overall cleanup function is called
[2026-03-04 06:08:25] 2026-03-04 05:07:54,625 | INFO     | --- collectZombieJob: --- 10, [1204565]
[2026-03-04 06:08:25] 2026-03-04 05:07:54,626 | INFO     | zombie collector waiting for pid 1204565
[2026-03-04 06:08:25] 2026-03-04 05:07:54,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 06:08:25] 2026-03-04 05:07:54,626 | INFO     | collected zombie processes
[2026-03-04 06:08:25] 2026-03-04 05:07:54,626 | INFO     | will attempt to kill all subprocesses of pid=1204565
[2026-03-04 06:08:25] 2026-03-04 05:07:54,667 | INFO     | process IDs to be killed: [1204565] (in reverse order)
[2026-03-04 06:08:25] 2026-03-04 05:07:54,690 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 06:08:25] 2026-03-04 05:07:54,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 06:08:25] 2026-03-04 05:07:54,692 | INFO     | did not find any defunct processes belonging to 1204565
[2026-03-04 06:08:25] 2026-03-04 05:07:54,693 | INFO     | did not find any defunct processes belonging to 1204565
[2026-03-04 06:08:25] 2026-03-04 05:07:54,693 | INFO     | ready for new job
[2026-03-04 06:08:25] 2026-03-04 05:07:54,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 06:08:25] 2026-03-04 05:07:54,694 | INFO     | **************************************
[2026-03-04 06:08:25] 2026-03-04 05:07:54,694 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 06:08:25] 2026-03-04 05:07:54,694 | INFO     | **************************************
[2026-03-04 06:08:25] 2026-03-04 05:07:54,694 | INFO     | 
[2026-03-04 06:08:25] 2026-03-04 05:07:54,695 | INFO     | architecture information:
[2026-03-04 06:08:25] 2026-03-04 05:07:54,695 | INFO     | executing command: cat /etc/os-release
[2026-03-04 06:08:25] 2026-03-04 05:07:54,705 | INFO     | cat /etc/os-release:
[2026-03-04 06:08:25] NAME="CentOS Linux"
[2026-03-04 06:08:25] VERSION="7 (Core)"
[2026-03-04 06:08:25] ID="centos"
[2026-03-04 06:08:25] ID_LIKE="rhel fedora"
[2026-03-04 06:08:25] VERSION_ID="7"
[2026-03-04 06:08:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 06:08:25] ANSI_COLOR="0;31"
[2026-03-04 06:08:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 06:08:25] HOME_URL="https://www.centos.org/"
[2026-03-04 06:08:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 06:08:25] 
[2026-03-04 06:08:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 06:08:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 06:08:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 06:08:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 06:08:25] 
[2026-03-04 06:08:25] 2026-03-04 05:07:54,705 | INFO     | **************************************
[2026-03-04 06:08:25] 2026-03-04 05:07:55,208 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 06:08:25] 2026-03-04 05:07:55,222 | INFO     | sufficient remaining disk space (233764290560 B)
[2026-03-04 06:08:25] 2026-03-04 05:07:55,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 06:08:25] 2026-03-04 05:07:55,222 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 06:08:25] 2026-03-04 05:07:55,222 | INFO     | update_server=False
[2026-03-04 06:08:25] 2026-03-04 05:07:55,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 06:08:25] 2026-03-04 05:07:55,361 | INFO     | all job control threads have been joined
[2026-03-04 06:08:25] 2026-03-04 05:07:55,660 | INFO     | all data control threads have been joined
[2026-03-04 06:08:25] 2026-03-04 05:07:55,691 | INFO     | all payload control threads have been joined
[2026-03-04 06:08:25] 2026-03-04 05:07:55,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 06:08:25] 2026-03-04 05:07:55,892 | INFO     | aborting loop
[2026-03-04 06:08:25] 2026-03-04 05:07:56,228 | INFO     | [job] retrieve thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:56,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 06:08:25] 2026-03-04 05:07:56,363 | INFO     | [job] control thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:56,363 | INFO     | [data] copytool_in thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:56,666 | INFO     | [data] control thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:56,697 | INFO     | [payload] control thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:56,773 | INFO     | [payload] failed_post thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:56,898 | INFO     | [job] job monitor thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:56,969 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:57,398 | INFO     | [payload] validate_post thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:57,637 | INFO     | [job] validate thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:57,672 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:57,694 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:57,835 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 06:08:25] 2026-03-04 05:07:58,151 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 06:08:25] 2026-03-04 05:07:58,350 | INFO     | [data] copytool_out thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:07:59,157 | INFO     | [job] queue monitor thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:08:01,842 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:08:05,931 | INFO     | job.realtimelogging is not enabled
[2026-03-04 06:08:25] 2026-03-04 05:08:06,937 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 06:08:25] 2026-03-04 05:08:09,051 | INFO     | [monitor] cgroup control has ended
[2026-03-04 06:08:25] 2026-03-04 05:08:10,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042235787072)>', '<ExcThread(monitor, started 140041745581824)>']
[2026-03-04 06:08:25] 2026-03-04 05:08:15,654 | INFO     | all workflow threads have been joined
[2026-03-04 06:08:25] 2026-03-04 05:08:15,654 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 06:08:25] 2026-03-04 05:08:15,654 | INFO     | traces error code: 0
[2026-03-04 06:08:25] 2026-03-04 05:08:15,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 06:08:25] 2026-03-04 05:08:25,370 | INFO     | PID=1200137 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 06:08:25] 2026-03-04 05:08:25,370 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 06:08:25] 2026-03-04 05:08:25,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 06:08:25] 2026-03-04 05:08:25,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 06:08:25] 2026-03-04 05:08:25,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 06:08:25] 2026-03-04 05:08:25,370 | CRITICAL | thread 'MainThread' is not alive
[2026-03-04 06:08:25] 2026-03-04 05:08:25,370 | INFO     | [monitor] control thread has ended
[2026-03-04 06:08:25] 2026-03-04 05:08:25,416 [wrapper] ==== pilot stdout END ====
[2026-03-04 06:08:25] 2026-03-04 05:08:25,419 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 06:08:25] 2026-03-04 05:08:25,421 [wrapper] pilotpid: 1200137
[2026-03-04 06:08:25] 2026-03-04 05:08:25,424 [wrapper] Pilot exit status: 0
[2026-03-04 06:08:25] 2026-03-04 05:08:25,431 [wrapper] pandaids: 7033784794
[2026-03-04 06:08:25] 2026-03-04 05:08:25,446 [wrapper] cleanup supervisor_pilot 1211019 1200138
[2026-03-04 06:08:25] 2026-03-04 05:08:25,448 [wrapper] Test setup, not cleaning
[2026-03-04 06:08:25] 2026-03-04 05:08:25,451 [wrapper] apfmon messages muted
[2026-03-04 06:08:25] 2026-03-04 05:08:25,453 [wrapper] ==== wrapper stdout END ====
[2026-03-04 06:08:25] 2026-03-04 05:08:25,455 [wrapper] ==== wrapper stderr END ====
[2026-03-04 06:08:25]  *** Error codes and diagnostics ***
[2026-03-04 06:08:25]     "exeErrorCode": 0,
[2026-03-04 06:08:25]     "exeErrorDiag": "",
[2026-03-04 06:08:25]     "pilotErrorCode": 0,
[2026-03-04 06:08:25]     "pilotErrorDiag": "",
[2026-03-04 06:08:25]  *** Listing of results directory ***
[2026-03-04 06:08:25] total 356996
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc    584627 Feb 28 19:22 pilot3.tar.gz
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc      5111 Feb 28 19:23 queuedata.json
[2026-03-04 06:08:25] -rwx------ 1 boinc boinc     36322 Feb 28 19:23 runpilot2-wrapper.sh
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc       100 Mar  4 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 06:08:25] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 02:49 run_atlas
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc       105 Mar  4 02:49 job.xml
[2026-03-04 06:08:25] -rw-r--r-- 2 boinc boinc 191129313 Mar  4 02:49 EVNT.48448182._000001.pool.root.1
[2026-03-04 06:08:25] -rw-r--r-- 2 boinc boinc    597990 Mar  4 02:49 input.tar.gz
[2026-03-04 06:08:25] -rw-r--r-- 2 boinc boinc     15845 Mar  4 02:49 start_atlas.sh
[2026-03-04 06:08:25] drwxrwx--x 2 boinc boinc      4096 Mar  4 02:49 shared
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc         0 Mar  4 02:49 boinc_setup_complete
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc      6441 Mar  4 02:49 init_data.xml
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc         0 Mar  4 02:49 boinc_lockfile
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc      2685 Mar  4 02:49 pandaJob.out
[2026-03-04 06:08:25] -rw------- 1 boinc boinc    998484 Mar  4 02:49 agis_schedconf.cvmfs.json
[2026-03-04 06:08:25] -rw------- 1 boinc boinc       428 Mar  4 02:49 workernode_map.json
[2026-03-04 06:08:25] drwx------ 5 boinc boinc      4096 Mar  4 02:49 pilot3
[2026-03-04 06:08:25] -rw------- 1 boinc boinc 166408465 Mar  4 06:07 HITS.48843949._000024.pool.root.1
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc       530 Mar  4 06:07 boinc_task_state.xml
[2026-03-04 06:08:25] -rw------- 1 boinc boinc      1021 Mar  4 06:07 memory_monitor_summary.json
[2026-03-04 06:08:25] -rw------- 1 boinc boinc   1516092 Mar  4 06:07 agis_ddmendpoints.agis.ALL.json
[2026-03-04 06:08:25] -rw------- 1 boinc boinc    366852 Mar  4 06:07 log.48843949._000024.job.log.tgz.1
[2026-03-04 06:08:25] -rw------- 1 boinc boinc        95 Mar  4 06:07 pilot_heartbeat.json
[2026-03-04 06:08:25] -rw------- 1 boinc boinc      6307 Mar  4 06:07 heartbeat.json
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc      8192 Mar  4 06:08 boinc_mmap_file
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc        28 Mar  4 06:08 wrapper_checkpoint.txt
[2026-03-04 06:08:25] -rw------- 1 boinc boinc       817 Mar  4 06:08 pilotlog.txt
[2026-03-04 06:08:25] -rw------- 1 boinc boinc   1686245 Mar  4 06:08 log.48843949._000024.job.log.1
[2026-03-04 06:08:25] -rw------- 1 boinc boinc       357 Mar  4 06:08 output.list
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc       620 Mar  4 06:08 runtime_log
[2026-03-04 06:08:25] -rw------- 1 boinc boinc   2068480 Mar  4 06:08 result.tar.gz
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc      8902 Mar  4 06:08 runtime_log.err
[2026-03-04 06:08:25] -rw------- 1 boinc boinc       661 Mar  4 06:08 hy4NDmy9dG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6n7KDmwq57Em.diag
[2026-03-04 06:08:25] -rw-r--r-- 1 boinc boinc     12323 Mar  4 06:08 stderr.txt
[2026-03-04 06:08:25] HITS file was successfully produced:
[2026-03-04 06:08:25] -rw------- 1 boinc boinc 166408465 Mar  4 06:07 shared/HITS.pool.root.1
[2026-03-04 06:08:25]  *** Contents of shared directory: ***
[2026-03-04 06:08:25] total 351792
[2026-03-04 06:08:25] -rw-r--r-- 2 boinc boinc 191129313 Mar  4 02:49 ATLAS.root_0
[2026-03-04 06:08:25] -rw-r--r-- 2 boinc boinc    597990 Mar  4 02:49 input.tar.gz
[2026-03-04 06:08:25] -rw-r--r-- 2 boinc boinc     15845 Mar  4 02:49 start_atlas.sh
[2026-03-04 06:08:25] -rw------- 1 boinc boinc 166408465 Mar  4 06:07 HITS.pool.root.1
[2026-03-04 06:08:25] -rw------- 1 boinc boinc   2068480 Mar  4 06:08 result.tar.gz
06:08:27 (1196098): run_atlas exited; CPU time 34843.962393
06:08:27 (1196098): called boinc_finish(0)

</stderr_txt>
]]>

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