Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:24:05 (1112372): wrapper (7.7.26015): starting
14:24:05 (1112372): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 14:24:05] Arguments: --nthreads 4
[2026-03-03 14:24:05] Threads: 4
[2026-03-03 14:24:05] Checking for CVMFS
[2026-03-03 14:24:05] No cvmfs_config command found, will try listing directly
[2026-03-03 14:24:05] CVMFS is ok
[2026-03-03 14:24:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 14:24:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 14:24:05] Further information can be found at the LHC@home message board.
[2026-03-03 14:24:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 14:24:05] Checking for apptainer binary...
[2026-03-03 14:24:05] which: no apptainer in ((null))
[2026-03-03 14:24:05] apptainer is not installed, using version from CVMFS
[2026-03-03 14:24:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 14:24:05] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2026-03-03 14:24:05] apptainer works
[2026-03-03 14:24:05] Set ATHENA_PROC_NUMBER=4
[2026-03-03 14:24:05] Set ATHENA_CORE_NUMBER=4
[2026-03-03 14:24:05] Starting ATLAS job with PandaID=7036056579
[2026-03-03 14:24:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 18:00:59]  *** The last 200 lines of the pilot log: ***
[2026-03-03 18:00:59] 2026-03-03 17:00:17,034 | INFO     | job 7036056579 has state=finished
[2026-03-03 18:00:59] 2026-03-03 17:00:17,034 | INFO     | preparing for final server update for job 7036056579 in state='finished'
[2026-03-03 18:00:59] 2026-03-03 17:00:17,034 | INFO     | reading metadata from: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-7036056579/jobReport.json
[2026-03-03 18:00:59] 2026-03-03 17:00:17,037 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot24/slots/0/workernode_map.json
[2026-03-03 18:00:59] 2026-03-03 17:00:17,037 | INFO     | this job has now completed (state=finished)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,037 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,038 | INFO     | log transfer has been attempted: DONE
[2026-03-03 18:00:59] 2026-03-03 17:00:17,038 | INFO     | job 7036056579 has finished - writing final server update
[2026-03-03 18:00:59] 2026-03-03 17:00:17,038 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_962980/.job.ad'
[2026-03-03 18:00:59] 2026-03-03 17:00:17,038 | INFO     | total number of processed events: 400 (read)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,050 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-7036056579/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,051 | INFO     | extracted standard info from prmon json
[2026-03-03 18:00:59] 2026-03-03 17:00:17,051 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 18:00:59] 2026-03-03 17:00:17,051 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 18:00:59] 2026-03-03 17:00:17,051 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 18:00:59] 2026-03-03 17:00:17,051 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 18:00:59] 2026-03-03 17:00:17,056 | INFO     | fitting pss+swap vs Time
[2026-03-03 18:00:59] 2026-03-03 17:00:17,056 | INFO     | sum of square deviations: 2954447953.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,058 | INFO     | sum of deviations: -2788968922.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,058 | INFO     | mean x: 1772550730.5
[2026-03-03 18:00:59] 2026-03-03 17:00:17,058 | INFO     | mean y: 2369587.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,058 | INFO     | intersect: 1675639510.4092405
[2026-03-03 18:00:59] 2026-03-03 17:00:17,058 | INFO     | chi2: 1.3691727432584742
[2026-03-03 18:00:59] 2026-03-03 17:00:17,059 | INFO     | sum of square deviations: 2750295288.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,060 | INFO     | sum of deviations: -2662421982.000007
[2026-03-03 18:00:59] 2026-03-03 17:00:17,060 | INFO     | mean x: 1772550578.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,060 | INFO     | mean y: 2369681.531400966
[2026-03-03 18:00:59] 2026-03-03 17:00:17,060 | INFO     | intersect: 1718286384.60871
[2026-03-03 18:00:59] 2026-03-03 17:00:17,060 | INFO     | chi2: 1.3690559811455052
[2026-03-03 18:00:59] 2026-03-03 17:00:17,061 | INFO     | current chi2=1.3690559811455052 (change=0.008527931449400575 %)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,061 | INFO     | right removable region: 206
[2026-03-03 18:00:59] 2026-03-03 17:00:17,061 | INFO     | sum of square deviations: 2750295288.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,062 | INFO     | sum of deviations: -28487145729.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,062 | INFO     | mean x: 1772550883.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,063 | INFO     | mean y: 2388529.9565217393
[2026-03-03 18:00:59] 2026-03-03 17:00:17,063 | INFO     | intersect: 18362204487.32169
[2026-03-03 18:00:59] 2026-03-03 17:00:17,063 | INFO     | chi2: 0.08605504593773348
[2026-03-03 18:00:59] 2026-03-03 17:00:17,063 | INFO     | current chi2=0.08605504593773348 (change=93.71481455780867 %)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,063 | INFO     | sum of square deviations: 2555770710.5
[2026-03-03 18:00:59] 2026-03-03 17:00:17,065 | INFO     | sum of deviations: -26092393363.5
[2026-03-03 18:00:59] 2026-03-03 17:00:17,065 | INFO     | mean x: 1772551035.5
[2026-03-03 18:00:59] 2026-03-03 17:00:17,065 | INFO     | mean y: 2386636.410891089
[2026-03-03 18:00:59] 2026-03-03 17:00:17,065 | INFO     | intersect: 18098727863.39721
[2026-03-03 18:00:59] 2026-03-03 17:00:17,065 | INFO     | chi2: 0.08314496986191354
[2026-03-03 18:00:59] 2026-03-03 17:00:17,065 | INFO     | current chi2=0.08314496986191354 (change=3.3816449042692716 %)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,065 | INFO     | left removable region: 20
[2026-03-03 18:00:59] 2026-03-03 17:00:17,066 | INFO     | sum of square deviations: 1995283922.5
[2026-03-03 18:00:59] 2026-03-03 17:00:17,067 | INFO     | sum of deviations: -16746116866.0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,067 | INFO     | mean x: 1772551157.5
[2026-03-03 18:00:59] 2026-03-03 17:00:17,067 | INFO     | mean y: 2379549.6129032257
[2026-03-03 18:00:59] 2026-03-03 17:00:17,067 | INFO     | intersect: 14879133930.14572
[2026-03-03 18:00:59] 2026-03-03 17:00:17,067 | INFO     | chi2: 0.06721891421574648
[2026-03-03 18:00:59] 2026-03-03 17:00:17,067 | INFO     | current memory leak: -8.39 B/s (using 186 data points, chi2=0.07)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,068 | INFO     | could have reported an average CPU frequency of 2592 MHz (11 samples)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,068 | INFO     | ..............................
[2026-03-03 18:00:59] 2026-03-03 17:00:17,068 | INFO     | . Timing measurements:
[2026-03-03 18:00:59] 2026-03-03 17:00:17,068 | INFO     | . get job = 0 s
[2026-03-03 18:00:59] 2026-03-03 17:00:17,068 | INFO     | . initial setup = 17 s
[2026-03-03 18:00:59] 2026-03-03 17:00:17,068 | INFO     | . payload setup = 6 s
[2026-03-03 18:00:59] 2026-03-03 17:00:17,069 | INFO     | . stage-in = 0 s
[2026-03-03 18:00:59] 2026-03-03 17:00:17,069 | INFO     | . payload execution = 12920 s
[2026-03-03 18:00:59] 2026-03-03 17:00:17,069 | INFO     | . stage-out = 1 s
[2026-03-03 18:00:59] 2026-03-03 17:00:17,069 | INFO     | . log creation = 0 s
[2026-03-03 18:00:59] 2026-03-03 17:00:17,069 | INFO     | ..............................
[2026-03-03 18:00:59] 2026-03-03 17:00:17,159 | INFO     | 
[2026-03-03 18:00:59] 2026-03-03 17:00:17,159 | INFO     | job summary report
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | --------------------------------------------------
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | PanDA job id: 7036056579
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | task id: 48838586
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | errors: (none)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | pilot state: finished 
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | transexitcode: 0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | exeerrorcode: 0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | exeerrordiag: 
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | exitcode: 0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | exitmsg: OK
[2026-03-03 18:00:59] 2026-03-03 17:00:17,160 | INFO     | cpuconsumptiontime: 48890 s
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | nevents: 400
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | neventsw: 0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | pid: 1132112
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | pgrp: 1132112
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | corecount: 4
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | event service: False
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | sizes: {0: 2286543, 1: 2287060, 12: 2287060, 12929: 2317310, 12932: 2326386, 12933: 2326524}
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | --------------------------------------------------
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | 
[2026-03-03 18:00:59] 2026-03-03 17:00:17,161 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2026-03-03 18:00:59] 2026-03-03 17:00:17,170 | INFO     | time since job start (12945s) is within the limit (349056.0s)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,182 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,183 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 18:00:59] 2026-03-03 17:00:17,184 | INFO     | job 7036056579 has completed (purged errors)
[2026-03-03 18:00:59] 2026-03-03 17:00:17,185 | INFO     | overall cleanup function is called
[2026-03-03 18:00:59] 2026-03-03 17:00:18,192 | INFO     | --- collectZombieJob: --- 10, [1132112]
[2026-03-03 18:00:59] 2026-03-03 17:00:18,192 | INFO     | zombie collector waiting for pid 1132112
[2026-03-03 18:00:59] 2026-03-03 17:00:18,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 18:00:59] 2026-03-03 17:00:18,193 | INFO     | collected zombie processes
[2026-03-03 18:00:59] 2026-03-03 17:00:18,193 | INFO     | will attempt to kill all subprocesses of pid=1132112
[2026-03-03 18:00:59] 2026-03-03 17:00:18,571 | INFO     | process IDs to be killed: [1132112] (in reverse order)
[2026-03-03 18:00:59] 2026-03-03 17:00:18,688 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 18:00:59] 2026-03-03 17:00:18,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 18:00:59] 2026-03-03 17:00:18,699 | INFO     | did not find any defunct processes belonging to 1132112
[2026-03-03 18:00:59] 2026-03-03 17:00:18,709 | INFO     | did not find any defunct processes belonging to 1132112
[2026-03-03 18:00:59] 2026-03-03 17:00:18,710 | INFO     | ready for new job
[2026-03-03 18:00:59] 2026-03-03 17:00:18,710 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 18:00:59] 2026-03-03 17:00:18,712 | INFO     | **************************************
[2026-03-03 18:00:59] 2026-03-03 17:00:18,712 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 18:00:59] 2026-03-03 17:00:18,712 | INFO     | **************************************
[2026-03-03 18:00:59] 2026-03-03 17:00:18,712 | INFO     | 
[2026-03-03 18:00:59] 2026-03-03 17:00:18,716 | INFO     | architecture information:
[2026-03-03 18:00:59] 2026-03-03 17:00:18,717 | INFO     | executing command: cat /etc/os-release
[2026-03-03 18:00:59] 2026-03-03 17:00:18,732 | INFO     | cat /etc/os-release:
[2026-03-03 18:00:59] NAME="CentOS Linux"
[2026-03-03 18:00:59] VERSION="7 (Core)"
[2026-03-03 18:00:59] ID="centos"
[2026-03-03 18:00:59] ID_LIKE="rhel fedora"
[2026-03-03 18:00:59] VERSION_ID="7"
[2026-03-03 18:00:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 18:00:59] ANSI_COLOR="0;31"
[2026-03-03 18:00:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 18:00:59] HOME_URL="https://www.centos.org/"
[2026-03-03 18:00:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 18:00:59] 
[2026-03-03 18:00:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 18:00:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 18:00:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 18:00:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 18:00:59] 
[2026-03-03 18:00:59] 2026-03-03 17:00:18,732 | INFO     | **************************************
[2026-03-03 18:00:59] 2026-03-03 17:00:19,234 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2026-03-03 18:00:59] 2026-03-03 17:00:19,251 | INFO     | sufficient remaining disk space (671920160768 B)
[2026-03-03 18:00:59] 2026-03-03 17:00:19,252 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 18:00:59] 2026-03-03 17:00:19,252 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 18:00:59] 2026-03-03 17:00:19,252 | INFO     | update_server=False
[2026-03-03 18:00:59] 2026-03-03 17:00:19,252 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 18:00:59] 2026-03-03 17:00:19,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 18:00:59] 2026-03-03 17:00:19,253 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 18:00:59] 2026-03-03 17:00:19,253 | INFO     | aborting loop
[2026-03-03 18:00:59] 2026-03-03 17:00:19,446 | INFO     | all data control threads have been joined
[2026-03-03 18:00:59] 2026-03-03 17:00:20,168 | INFO     | all job control threads have been joined
[2026-03-03 18:00:59] 2026-03-03 17:00:20,257 | INFO     | [job] retrieve thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:20,258 | INFO     | [job] job monitor thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:20,349 | INFO     | all payload control threads have been joined
[2026-03-03 18:00:59] 2026-03-03 17:00:20,451 | INFO     | [data] control thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:20,524 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:20,636 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:20,895 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:20,909 | INFO     | [data] copytool_in thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:21,138 | INFO     | [payload] validate_post thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:21,173 | INFO     | [job] control thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:21,257 | INFO     | [data] copytool_out thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:21,354 | INFO     | [payload] control thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:21,502 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:21,691 | INFO     | [job] validate thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:21,744 | INFO     | [payload] failed_post thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:22,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 18:00:59] 2026-03-03 17:00:22,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 18:00:59] 2026-03-03 17:00:23,174 | INFO     | [job] queue monitor thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:26,129 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 18:00:59] 2026-03-03 17:00:50,660 | INFO     | PID=1119529 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 18:00:59] 2026-03-03 17:00:50,660 | INFO     | .. there are 12 such processes running
[2026-03-03 18:00:59] 2026-03-03 17:00:50,661 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 18:00:59] 2026-03-03 17:00:50,661 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 18:00:59] 2026-03-03 17:00:50,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 18:00:59] 2026-03-03 17:00:53,549 | INFO     | [monitor] cgroup control has ended
[2026-03-03 18:00:59] 2026-03-03 17:00:54,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22498094643008)>', '<ExcThread(monitor, started 22497851610880)>']
[2026-03-03 18:00:59] 2026-03-03 17:00:54,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 18:00:59] 2026-03-03 17:00:54,680 | INFO     | [monitor] control thread has ended
[2026-03-03 18:00:59] 2026-03-03 17:00:59,620 | INFO     | all workflow threads have been joined
[2026-03-03 18:00:59] 2026-03-03 17:00:59,620 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 18:00:59] 2026-03-03 17:00:59,621 | INFO     | traces error code: 0
[2026-03-03 18:00:59] 2026-03-03 17:00:59,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 18:00:59] 2026-03-03 17:00:59,757 [wrapper] ==== pilot stdout END ====
[2026-03-03 18:00:59] 2026-03-03 17:00:59,762 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 18:00:59] 2026-03-03 17:00:59,764 [wrapper] pilotpid: 1119529
[2026-03-03 18:00:59] 2026-03-03 17:00:59,767 [wrapper] Pilot exit status: 0
[2026-03-03 18:00:59] 2026-03-03 17:00:59,777 [wrapper] pandaids: 7036056579
[2026-03-03 18:00:59] 2026-03-03 17:00:59,848 [wrapper] cleanup supervisor_pilot 1301181 1119530
[2026-03-03 18:00:59] 2026-03-03 17:00:59,851 [wrapper] Test setup, not cleaning
[2026-03-03 18:00:59] 2026-03-03 17:00:59,854 [wrapper] apfmon messages muted
[2026-03-03 18:00:59] 2026-03-03 17:00:59,856 [wrapper] ==== wrapper stdout END ====
[2026-03-03 18:00:59] 2026-03-03 17:00:59,859 [wrapper] ==== wrapper stderr END ====
[2026-03-03 18:00:59]  *** Error codes and diagnostics ***
[2026-03-03 18:00:59]     "exeErrorCode": 0,
[2026-03-03 18:00:59]     "exeErrorDiag": "",
[2026-03-03 18:00:59]     "pilotErrorCode": 0,
[2026-03-03 18:00:59]     "pilotErrorDiag": "",
[2026-03-03 18:00:59]  *** Listing of results directory ***
[2026-03-03 18:00:59] total 483456
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc    584627 Mar  2 18:50 pilot3.tar.gz
[2026-03-03 18:00:59] -rwx------ 1 boinc boinc     36322 Mar  2 19:04 runpilot2-wrapper.sh
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc      5111 Mar  2 19:05 queuedata.json
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc       100 Mar  3 14:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 18:00:59] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 14:23 run_atlas
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc       105 Mar  3 14:23 job.xml
[2026-03-03 18:00:59] -rw-r--r-- 2 boinc boinc 279011432 Mar  3 14:24 EVNT.48220221._000071.pool.root.1
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc      6638 Mar  3 14:24 init_data.xml
[2026-03-03 18:00:59] -rw-r--r-- 2 boinc boinc     15845 Mar  3 14:24 start_atlas.sh
[2026-03-03 18:00:59] drwxrwx--x 2 boinc boinc      4096 Mar  3 14:24 shared
[2026-03-03 18:00:59] -rw-r--r-- 2 boinc boinc    597956 Mar  3 14:24 input.tar.gz
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc         0 Mar  3 14:24 boinc_lockfile
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc      2561 Mar  3 14:24 pandaJob.out
[2026-03-03 18:00:59] -rw------- 1 boinc boinc    998434 Mar  3 14:24 agis_schedconf.cvmfs.json
[2026-03-03 18:00:59] -rw------- 1 boinc boinc       452 Mar  3 14:24 workernode_map.json
[2026-03-03 18:00:59] drwx------ 5 boinc boinc      4096 Mar  3 14:24 pilot3
[2026-03-03 18:00:59] -rw------- 1 boinc boinc 207677354 Mar  3 17:59 HITS.48838586._001837.pool.root.1
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc       529 Mar  3 17:59 boinc_task_state.xml
[2026-03-03 18:00:59] -rw------- 1 boinc boinc      1034 Mar  3 18:00 memory_monitor_summary.json
[2026-03-03 18:00:59] -rw------- 1 boinc boinc   1516092 Mar  3 18:00 agis_ddmendpoints.agis.ALL.json
[2026-03-03 18:00:59] -rw------- 1 boinc boinc    394321 Mar  3 18:00 log.48838586._001837.job.log.tgz.1
[2026-03-03 18:00:59] -rw------- 1 boinc boinc      6404 Mar  3 18:00 heartbeat.json
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc        27 Mar  3 18:00 wrapper_checkpoint.txt
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc      8192 Mar  3 18:00 boinc_mmap_file
[2026-03-03 18:00:59] -rw------- 1 boinc boinc        95 Mar  3 18:00 pilot_heartbeat.json
[2026-03-03 18:00:59] -rw------- 1 boinc boinc      4830 Mar  3 18:00 pilotlog.txt
[2026-03-03 18:00:59] -rw------- 1 boinc boinc   1823454 Mar  3 18:00 log.48838586._001837.job.log.1
[2026-03-03 18:00:59] -rw------- 1 boinc boinc       357 Mar  3 18:00 output.list
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc       620 Mar  3 18:00 runtime_log
[2026-03-03 18:00:59] -rw------- 1 boinc boinc   2232320 Mar  3 18:00 result.tar.gz
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc      9205 Mar  3 18:00 runtime_log.err
[2026-03-03 18:00:59] -rw------- 1 boinc boinc       665 Mar  3 18:00 rBlMDmIoMH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmVKCLDmjUzQVn.diag
[2026-03-03 18:00:59] -rw-r--r-- 1 boinc boinc     21103 Mar  3 18:00 stderr.txt
[2026-03-03 18:00:59] HITS file was successfully produced:
[2026-03-03 18:00:59] -rw------- 1 boinc boinc 207677354 Mar  3 17:59 shared/HITS.pool.root.1
[2026-03-03 18:00:59]  *** Contents of shared directory: ***
[2026-03-03 18:00:59] total 478076
[2026-03-03 18:00:59] -rw-r--r-- 2 boinc boinc 279011432 Mar  3 14:24 ATLAS.root_0
[2026-03-03 18:00:59] -rw-r--r-- 2 boinc boinc     15845 Mar  3 14:24 start_atlas.sh
[2026-03-03 18:00:59] -rw-r--r-- 2 boinc boinc    597956 Mar  3 14:24 input.tar.gz
[2026-03-03 18:00:59] -rw------- 1 boinc boinc 207677354 Mar  3 17:59 HITS.pool.root.1
[2026-03-03 18:00:59] -rw------- 1 boinc boinc   2232320 Mar  3 18:00 result.tar.gz
18:01:01 (1112372): run_atlas exited; CPU time 49387.846755
18:01:01 (1112372): called boinc_finish(0)

</stderr_txt>
]]>

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