Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:07:47 (2187270): wrapper (7.7.26015): starting
11:07:47 (2187270): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 11:07:47] Arguments: --nthreads 4
[2026-03-04 11:07:47] Threads: 4
[2026-03-04 11:07:47] Checking for CVMFS
[2026-03-04 11:07:47] No cvmfs_config command found, will try listing directly
[2026-03-04 11:07:47] CVMFS is ok
[2026-03-04 11:07:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 11:07:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 11:07:47] Further information can be found at the LHC@home message board.
[2026-03-04 11:07:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 11:07:47] Checking for apptainer binary...
[2026-03-04 11:07:47] which: no apptainer in ((null))
[2026-03-04 11:07:47] apptainer is not installed, using version from CVMFS
[2026-03-04 11:07:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 11:07:47] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot164/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-04 11:07:47] apptainer works
[2026-03-04 11:07:47] Set ATHENA_PROC_NUMBER=4
[2026-03-04 11:07:47] Set ATHENA_CORE_NUMBER=4
[2026-03-04 11:07:47] Starting ATLAS job with PandaID=7036056602
[2026-03-04 11:07:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot164/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 12:49:19]  *** The last 200 lines of the pilot log: ***
[2026-03-04 12:49:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-04 12:49:19]  replicas=None
[2026-03-04 12:49:19]  scope=mc23_13p6TeV
[2026-03-04 12:49:19]  status=None
[2026-03-04 12:49:19]  status_code=0
[2026-03-04 12:49:19]  storage_token=
[2026-03-04 12:49:19]  surl=/var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7036056602/log.48838586._001860.job.log.tgz.1
[2026-03-04 12:49:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/14/log.48838586._001860.job.log.tgz.1
[2026-03-04 12:49:19]  workdir=None
[2026-03-04 12:49:19] ]
[2026-03-04 12:49:19] 2026-03-04 11:45:33,849 | INFO     | transferring file log.48838586._001860.job.log.tgz.1 from /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7036056602/log.48838586._001860.job.log.tgz.1 to /var/lib/
[2026-03-04 12:49:19] 2026-03-04 11:45:33,850 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7036056602/log.48838586._001860.job.log.tgz.1 /var/lib/boinc/var/slot164/slots/0/
[2026-03-04 12:49:19] 2026-03-04 11:45:33,866 | INFO     | adding to output.list: log.48838586._001860.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/14/log.48838586._001860.job.log.tg
[2026-03-04 12:49:19] 2026-03-04 11:45:33,867 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-04 12:49:19] 2026-03-04 11:45:33,867 | INFO     | summary of transferred files:
[2026-03-04 12:49:19] 2026-03-04 11:45:33,867 | INFO     |  -- lfn=log.48838586._001860.job.log.tgz.1, status_code=0, status=transferred
[2026-03-04 12:49:19] 2026-03-04 11:45:33,867 | INFO     | stage-out finished correctly
[2026-03-04 12:49:19] 2026-03-04 11:45:33,993 | INFO     | time since job start (5852s) is within the limit (349056.0s)
[2026-03-04 12:49:19] 2026-03-04 11:45:35,107 | WARNING  | process 2220747 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 12:49:19] 2026-03-04 11:45:35,108 | INFO     | using path: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7036056602/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 12:49:19] 2026-03-04 11:45:35,613 | INFO     | number of running child processes to parent process 2220747: 1
[2026-03-04 12:49:19] 2026-03-04 11:45:35,613 | INFO     | maximum number of monitored processes: 6
[2026-03-04 12:49:19] 2026-03-04 11:45:35,998 | INFO     | time since job start (5854s) is within the limit (349056.0s)
[2026-03-04 12:49:19] 2026-03-04 11:45:36,954 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-04 12:49:19] 2026-03-04 11:45:38,005 | INFO     | time since job start (5857s) is within the limit (349056.0s)
[2026-03-04 12:49:19] 2026-03-04 11:45:38,116 | INFO     | monitor loop #420: job 0:7036056602 is in state 'finished'
[2026-03-04 12:49:19] 2026-03-04 11:45:38,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-04 12:49:19] 2026-03-04 11:45:39,617 | INFO     | PID=2199938 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-04 12:49:19] 2026-03-04 11:45:39,617 | INFO     | .. there are 39 such processes running
[2026-03-04 12:49:19] 2026-03-04 11:45:39,892 | INFO     | job 7036056602 has state=finished
[2026-03-04 12:49:19] 2026-03-04 11:45:39,892 | INFO     | preparing for final server update for job 7036056602 in state='finished'
[2026-03-04 12:49:19] 2026-03-04 11:45:39,892 | INFO     | reading metadata from: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7036056602/jobReport.json
[2026-03-04 12:49:19] 2026-03-04 11:45:39,893 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot164/slots/0/workernode_map.json
[2026-03-04 12:49:19] 2026-03-04 11:45:39,894 | INFO     | this job has now completed (state=finished)
[2026-03-04 12:49:19] 2026-03-04 11:45:39,894 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 12:49:19] 2026-03-04 11:45:39,894 | INFO     | log transfer has been attempted: DONE
[2026-03-04 12:49:19] 2026-03-04 11:45:39,894 | INFO     | job 7036056602 has finished - writing final server update
[2026-03-04 12:49:19] 2026-03-04 11:45:39,894 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_59809/.job.ad'
[2026-03-04 12:49:19] 2026-03-04 11:45:39,894 | INFO     | total number of processed events: 400 (read)
[2026-03-04 12:49:19] 2026-03-04 11:45:39,913 | INFO     | using path: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7036056602/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 12:49:19] 2026-03-04 11:45:39,914 | INFO     | extracted standard info from prmon json
[2026-03-04 12:49:19] 2026-03-04 11:45:39,914 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 12:49:19] 2026-03-04 11:45:39,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 12:49:19] 2026-03-04 11:45:39,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 12:49:19] 2026-03-04 11:45:39,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 12:49:19] 2026-03-04 11:45:39,915 | INFO     | fitting pss+swap vs Time
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | sum of square deviations: 218571540.0
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | sum of deviations: 1261601512.0
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | mean x: 1772621892.0
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | mean y: 2345101.7191011235
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | intersect: -10229281848.209972
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | chi2: 0.0004429089365456301
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | current memory leak: 5.77 B/s (using 89 data points, chi2=0.00)
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | could have reported an average CPU frequency of 3581 MHz (7 samples)
[2026-03-04 12:49:19] 2026-03-04 11:45:39,916 | INFO     | ..............................
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | . Timing measurements:
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | . get job = 0 s
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | . initial setup = 5 s
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | . payload setup = 5 s
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | . stage-in = 0 s
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | . payload execution = 5832 s
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | . stage-out = 0 s
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | . log creation = 0 s
[2026-03-04 12:49:19] 2026-03-04 11:45:39,917 | INFO     | ..............................
[2026-03-04 12:49:19] 2026-03-04 11:45:40,000 | INFO     | 
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | job summary report
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | --------------------------------------------------
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | PanDA job id: 7036056602
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | task id: 48838586
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | errors: (none)
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | pilot state: finished 
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | transexitcode: 0
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | exeerrorcode: 0
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | exeerrordiag: 
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | exitcode: 0
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | exitmsg: OK
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | cpuconsumptiontime: 22370 s
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | nevents: 400
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | neventsw: 0
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | pid: 2220747
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | pgrp: 2220747
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | corecount: 4
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | event service: False
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | sizes: {0: 2287033, 11: 2287033, 5841: 2313790, 5842: 2322812, 5845: 2322868, 5848: 2323062}
[2026-03-04 12:49:19] 2026-03-04 11:45:40,001 | INFO     | --------------------------------------------------
[2026-03-04 12:49:19] 2026-03-04 11:45:40,002 | INFO     | 
[2026-03-04 12:49:19] 2026-03-04 11:45:40,002 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot164/slots/0
[2026-03-04 12:49:19] 2026-03-04 11:45:40,019 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 12:49:19] 2026-03-04 11:45:40,020 | INFO     | job 7036056602 has completed (purged errors)
[2026-03-04 12:49:19] 2026-03-04 11:45:40,021 | INFO     | overall cleanup function is called
[2026-03-04 12:49:19] 2026-03-04 11:45:41,027 | INFO     | --- collectZombieJob: --- 10, [2220747]
[2026-03-04 12:49:19] 2026-03-04 11:45:41,028 | INFO     | zombie collector waiting for pid 2220747
[2026-03-04 12:49:19] 2026-03-04 11:45:41,028 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 12:49:19] 2026-03-04 11:45:41,028 | INFO     | collected zombie processes
[2026-03-04 12:49:19] 2026-03-04 11:45:41,028 | INFO     | will attempt to kill all subprocesses of pid=2220747
[2026-03-04 12:49:19] 2026-03-04 11:45:41,601 | INFO     | process IDs to be killed: [2220747] (in reverse order)
[2026-03-04 12:49:19] 2026-03-04 11:45:41,848 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 12:49:19] 2026-03-04 11:45:41,849 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 12:49:19] 2026-03-04 11:45:41,882 | INFO     | did not find any defunct processes belonging to 2220747
[2026-03-04 12:49:19] 2026-03-04 11:45:41,914 | INFO     | did not find any defunct processes belonging to 2220747
[2026-03-04 12:49:19] 2026-03-04 11:45:41,914 | INFO     | ready for new job
[2026-03-04 12:49:19] 2026-03-04 11:45:41,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 12:49:19] 2026-03-04 11:45:41,916 | INFO     | **************************************
[2026-03-04 12:49:19] 2026-03-04 11:45:41,916 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 12:49:19] 2026-03-04 11:45:41,916 | INFO     | **************************************
[2026-03-04 12:49:19] 2026-03-04 11:45:41,916 | INFO     | 
[2026-03-04 12:49:19] 2026-03-04 11:45:41,922 | INFO     | architecture information:
[2026-03-04 12:49:19] 2026-03-04 11:45:41,922 | INFO     | executing command: cat /etc/os-release
[2026-03-04 12:49:19] 2026-03-04 11:45:41,936 | INFO     | cat /etc/os-release:
[2026-03-04 12:49:19] NAME="CentOS Linux"
[2026-03-04 12:49:19] VERSION="7 (Core)"
[2026-03-04 12:49:19] ID="centos"
[2026-03-04 12:49:19] ID_LIKE="rhel fedora"
[2026-03-04 12:49:19] VERSION_ID="7"
[2026-03-04 12:49:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 12:49:19] ANSI_COLOR="0;31"
[2026-03-04 12:49:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 12:49:19] HOME_URL="https://www.centos.org/"
[2026-03-04 12:49:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 12:49:19] 
[2026-03-04 12:49:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 12:49:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 12:49:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 12:49:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 12:49:19] 
[2026-03-04 12:49:19] 2026-03-04 11:45:41,937 | INFO     | **************************************
[2026-03-04 12:49:19] 2026-03-04 11:45:42,440 | INFO     | executing command: df -mP /var/lib/boinc/var/slot164/slots/0
[2026-03-04 12:49:19] 2026-03-04 11:45:42,451 | INFO     | sufficient remaining disk space (23096983552 B)
[2026-03-04 12:49:19] 2026-03-04 11:45:42,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 12:49:19] 2026-03-04 11:45:42,451 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 12:49:19] 2026-03-04 11:45:42,451 | INFO     | update_server=False
[2026-03-04 12:49:19] 2026-03-04 11:45:42,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 12:49:19] 2026-03-04 11:45:42,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 12:49:19] 2026-03-04 11:45:42,452 | INFO     | aborting loop
[2026-03-04 12:49:19] 2026-03-04 11:45:42,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 12:49:19] 2026-03-04 11:45:42,673 | INFO     | all payload control threads have been joined
[2026-03-04 12:49:19] 2026-03-04 11:45:43,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 12:49:19] 2026-03-04 11:45:43,026 | INFO     | all data control threads have been joined
[2026-03-04 12:49:19] 2026-03-04 11:45:43,456 | INFO     | [job] retrieve thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:43,457 | INFO     | [job] job monitor thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:43,679 | INFO     | [payload] control thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:43,739 | INFO     | all job control threads have been joined
[2026-03-04 12:49:19] 2026-03-04 11:45:43,954 | INFO     | [payload] validate_post thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:43,997 | INFO     | [job] validate thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,032 | INFO     | [data] control thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,330 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,376 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,457 | INFO     | [data] copytool_out thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,485 | INFO     | [payload] failed_post thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,668 | INFO     | [data] copytool_in thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,744 | INFO     | [job] control thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,811 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:44,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 12:49:19] 2026-03-04 11:45:45,978 | INFO     | [job] queue monitor thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:47,015 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:45:52,575 | INFO     | job.realtimelogging is not enabled
[2026-03-04 12:49:19] 2026-03-04 11:45:53,580 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 12:49:19] 2026-03-04 11:46:10,413 | INFO     | [monitor] cgroup control has ended
[2026-03-04 12:49:19] 2026-03-04 11:46:11,658 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22880517826368)>', '<ExcThread(monitor, started 22880273565440)>']
[2026-03-04 12:49:19] 2026-03-04 11:46:12,286 | INFO     | PID=2199938 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 12:49:19] 2026-03-04 11:46:12,287 | INFO     | .. there are 39 such processes running
[2026-03-04 12:49:19] 2026-03-04 11:46:12,287 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 12:49:19] 2026-03-04 11:46:12,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 12:49:19] 2026-03-04 11:46:12,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 12:49:19] 2026-03-04 11:46:12,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 12:49:19] 2026-03-04 11:46:12,287 | INFO     | [monitor] control thread has ended
[2026-03-04 12:49:19] 2026-03-04 11:46:16,684 | INFO     | all workflow threads have been joined
[2026-03-04 12:49:19] 2026-03-04 11:46:16,684 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 12:49:19] 2026-03-04 11:46:16,685 | INFO     | traces error code: 0
[2026-03-04 12:49:19] 2026-03-04 11:46:16,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 12:49:19] 2026-03-04 11:46:16,908 [wrapper] ==== pilot stdout END ====
[2026-03-04 12:49:19] 2026-03-04 11:46:16,910 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 12:49:19] 2026-03-04 11:46:16,912 [wrapper] pilotpid: 2199938
[2026-03-04 12:49:19] 2026-03-04 11:46:16,914 [wrapper] Pilot exit status: 0
[2026-03-04 12:49:19] 2026-03-04 11:46:16,923 [wrapper] pandaids: 7036056602
[2026-03-04 12:49:19] 2026-03-04 11:46:17,060 [wrapper] cleanup supervisor_pilot 2814508 2199940
[2026-03-04 12:49:19] 2026-03-04 11:46:17,063 [wrapper] Test setup, not cleaning
[2026-03-04 12:49:19] 2026-03-04 11:46:17,065 [wrapper] apfmon messages muted
[2026-03-04 12:49:19] 2026-03-04 11:46:17,068 [wrapper] ==== wrapper stdout END ====
[2026-03-04 12:49:19] 2026-03-04 11:46:17,070 [wrapper] ==== wrapper stderr END ====
[2026-03-04 12:49:19]  *** Error codes and diagnostics ***
[2026-03-04 12:49:19]     "exeErrorCode": 0,
[2026-03-04 12:49:19]     "exeErrorDiag": "",
[2026-03-04 12:49:19]     "pilotErrorCode": 0,
[2026-03-04 12:49:19]     "pilotErrorDiag": "",
[2026-03-04 12:49:19]  *** Listing of results directory ***
[2026-03-04 12:49:19] total 481952
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc    584627 Mar  2 18:50 pilot3.tar.gz
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc      5111 Mar  2 19:01 queuedata.json
[2026-03-04 12:49:19] -rwx------. 1 boinc boinc     36322 Mar  2 19:02 runpilot2-wrapper.sh
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc       100 Mar  4 11:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 12:49:19] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 11:07 run_atlas
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc       105 Mar  4 11:07 job.xml
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc      6707 Mar  4 11:07 init_data.xml
[2026-03-04 12:49:19] -rw-r--r--. 2 boinc boinc 278953979 Mar  4 11:07 EVNT.48220221._000072.pool.root.1
[2026-03-04 12:49:19] -rw-r--r--. 2 boinc boinc     15845 Mar  4 11:07 start_atlas.sh
[2026-03-04 12:49:19] drwxrwx--x. 2 boinc boinc      4096 Mar  4 11:07 shared
[2026-03-04 12:49:19] -rw-r--r--. 2 boinc boinc    597956 Mar  4 11:07 input.tar.gz
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc         0 Mar  4 11:07 boinc_lockfile
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc      2561 Mar  4 11:07 pandaJob.out
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc    997376 Mar  4 11:07 agis_schedconf.cvmfs.json
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc   1516092 Mar  4 11:07 agis_ddmendpoints.agis.ALL.json
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc       445 Mar  4 11:08 workernode_map.json
[2026-03-04 12:49:19] drwx------. 5 boinc boinc      4096 Mar  4 11:08 pilot3
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc 208367825 Mar  4 12:45 HITS.48838586._001860.pool.root.1
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc      1031 Mar  4 12:45 memory_monitor_summary.json
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc       528 Mar  4 12:45 boinc_task_state.xml
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc    289412 Mar  4 12:45 log.48838586._001860.job.log.tgz.1
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc      6354 Mar  4 12:45 heartbeat.json
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc        95 Mar  4 12:46 pilot_heartbeat.json
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc      4902 Mar  4 12:46 pilotlog.txt
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc    844085 Mar  4 12:46 log.48838586._001860.job.log.1
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc       357 Mar  4 12:46 output.list
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc       620 Mar  4 12:46 runtime_log
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc   1146880 Mar  4 12:46 result.tar.gz
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc      9221 Mar  4 12:46 runtime_log.err
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc       662 Mar  4 12:46 PaWLDmEmMH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmOHCLDmpxHvrm.diag
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc        26 Mar  4 12:49 wrapper_checkpoint.txt
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc      8192 Mar  4 12:49 boinc_mmap_file
[2026-03-04 12:49:19] -rw-r--r--. 1 boinc boinc     21855 Mar  4 12:49 stderr.txt
[2026-03-04 12:49:19] HITS file was successfully produced:
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc 208367825 Mar  4 12:45 shared/HITS.pool.root.1
[2026-03-04 12:49:19]  *** Contents of shared directory: ***
[2026-03-04 12:49:19] total 477632
[2026-03-04 12:49:19] -rw-r--r--. 2 boinc boinc 278953979 Mar  4 11:07 ATLAS.root_0
[2026-03-04 12:49:19] -rw-r--r--. 2 boinc boinc     15845 Mar  4 11:07 start_atlas.sh
[2026-03-04 12:49:19] -rw-r--r--. 2 boinc boinc    597956 Mar  4 11:07 input.tar.gz
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc 208367825 Mar  4 12:45 HITS.pool.root.1
[2026-03-04 12:49:19] -rw-------. 1 boinc boinc   1146880 Mar  4 12:46 result.tar.gz
12:49:20 (2187270): run_atlas exited; CPU time 22649.517900
12:49:20 (2187270): called boinc_finish(0)

</stderr_txt>
]]>

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