Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
09:05:59 (1281025): wrapper (7.7.26015): starting
09:05:59 (1281025): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 09:05:59] Arguments: --nthreads 4
[2026-03-04 09:05:59] Threads: 4
[2026-03-04 09:05:59] Checking for CVMFS
[2026-03-04 09:05:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 09:05:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 09:05:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 09:05:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 09:05:59] 2.13.3.0 11582 23541 46276 156873 2 49 32050812 33554433 0 130560 0 10744102 99.986 836328 313 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-03-04 09:05:59] CVMFS is ok
[2026-03-04 09:05:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 09:05:59] Checking for apptainer binary...
[2026-03-04 09:05:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 09:05:59] Running /usr/bin/apptainer --version
[2026-03-04 09:05:59] apptainer version 1.4.5
[2026-03-04 09:05:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 09:05:59] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-03-04 09:05:59] apptainer works
[2026-03-04 09:05:59] Set ATHENA_PROC_NUMBER=4
[2026-03-04 09:05:59] Set ATHENA_CORE_NUMBER=4
[2026-03-04 09:05:59] Starting ATLAS job with PandaID=7036056623
[2026-03-04 09:05:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 10:12:29]  *** The last 200 lines of the pilot log: ***
[2026-03-04 10:12:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-04 10:12:29]  is_altstaged=None
[2026-03-04 10:12:29]  is_tar=False
[2026-03-04 10:12:29]  lfn=log.48838586._001881.job.log.tgz.1
[2026-03-04 10:12:29]  mtime=0
[2026-03-04 10:12:29]  protocol_id=None
[2026-03-04 10:12:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-04 10:12:29]  replicas=None
[2026-03-04 10:12:29]  scope=mc23_13p6TeV
[2026-03-04 10:12:29]  status=None
[2026-03-04 10:12:29]  status_code=0
[2026-03-04 10:12:29]  storage_token=
[2026-03-04 10:12:29]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7036056623/log.48838586._001881.job.log.tgz.1
[2026-03-04 10:12:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/42/log.48838586._001881.job.log.tgz.1
[2026-03-04 10:12:29]  workdir=None
[2026-03-04 10:12:29] ]
[2026-03-04 10:12:29] 2026-03-04 08:11:53,926 | INFO     | transferring file log.48838586._001881.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7036056623/log.48838586._001881.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-03-04 10:12:29] 2026-03-04 08:11:53,926 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7036056623/log.48838586._001881.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48838586._001881.job
[2026-03-04 10:12:29] 2026-03-04 08:11:53,934 | INFO     | adding to output.list: log.48838586._001881.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/42/log.48838586._001881.job.log.tg
[2026-03-04 10:12:29] 2026-03-04 08:11:53,935 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-04 10:12:29] 2026-03-04 08:11:53,935 | INFO     | summary of transferred files:
[2026-03-04 10:12:29] 2026-03-04 08:11:53,935 | INFO     |  -- lfn=log.48838586._001881.job.log.tgz.1, status_code=0, status=transferred
[2026-03-04 10:12:29] 2026-03-04 08:11:53,935 | INFO     | stage-out finished correctly
[2026-03-04 10:12:29] 2026-03-04 08:11:54,307 | INFO     | time since job start (3948s) is within the limit (349056.0s)
[2026-03-04 10:12:29] 2026-03-04 08:11:56,310 | INFO     | time since job start (3950s) is within the limit (349056.0s)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,186 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-04 10:12:29] 2026-03-04 08:11:57,271 | INFO     | job 7036056623 has state=finished
[2026-03-04 10:12:29] 2026-03-04 08:11:57,271 | INFO     | preparing for final server update for job 7036056623 in state='finished'
[2026-03-04 10:12:29] 2026-03-04 08:11:57,271 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7036056623/jobReport.json
[2026-03-04 10:12:29] 2026-03-04 08:11:57,272 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-03-04 10:12:29] 2026-03-04 08:11:57,272 | INFO     | this job has now completed (state=finished)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,272 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,272 | INFO     | log transfer has been attempted: DONE
[2026-03-04 10:12:29] 2026-03-04 08:11:57,272 | INFO     | job 7036056623 has finished - writing final server update
[2026-03-04 10:12:29] 2026-03-04 08:11:57,272 | INFO     | total number of processed events: 400 (read)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,274 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7036056623/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,274 | INFO     | extracted standard info from prmon json
[2026-03-04 10:12:29] 2026-03-04 08:11:57,274 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 10:12:29] 2026-03-04 08:11:57,274 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 10:12:29] 2026-03-04 08:11:57,274 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | fitting pss+swap vs Time
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | sum of square deviations: 60482994.5
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | sum of deviations: -921617066.5
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | mean x: 1772610025.5
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | mean y: 2412437.9482758623
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | intersect: 27012775685.58477
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | chi2: 0.048978453206499226
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | current memory leak: -15.24 B/s (using 58 data points, chi2=0.05)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,275 | INFO     | could have reported an average CPU frequency of 3200 MHz (6 samples)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | ..............................
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | . Timing measurements:
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | . get job = 0 s
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | . initial setup = 3 s
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | . payload setup = 2 s
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | . stage-in = 0 s
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | . payload execution = 3930 s
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | . stage-out = 0 s
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | . log creation = 0 s
[2026-03-04 10:12:29] 2026-03-04 08:11:57,276 | INFO     | ..............................
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | 
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | job summary report
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | --------------------------------------------------
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | PanDA job id: 7036056623
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | task id: 48838586
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | errors: (none)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | pilot state: finished 
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | transexitcode: 0
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | exeerrorcode: 0
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | exeerrordiag: 
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | exitcode: 0
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | exitmsg: OK
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | cpuconsumptiontime: 15113 s
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | nevents: 400
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | neventsw: 0
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | pid: 1289491
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | pgrp: 1289491
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | corecount: 4
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | event service: False
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | sizes: {0: 2286645, 1: 2287049, 11: 2287049, 3936: 2313028, 3937: 2322026, 3940: 2322404}
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | --------------------------------------------------
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | 
[2026-03-04 10:12:29] 2026-03-04 08:11:57,301 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,310 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | job 7036056623 has completed (purged errors)
[2026-03-04 10:12:29] 2026-03-04 08:11:57,311 | INFO     | overall cleanup function is called
[2026-03-04 10:12:29] 2026-03-04 08:11:58,318 | INFO     | --- collectZombieJob: --- 10, [1289491]
[2026-03-04 10:12:29] 2026-03-04 08:11:58,318 | INFO     | zombie collector waiting for pid 1289491
[2026-03-04 10:12:29] 2026-03-04 08:11:58,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 10:12:29] 2026-03-04 08:11:58,318 | INFO     | collected zombie processes
[2026-03-04 10:12:29] 2026-03-04 08:11:58,318 | INFO     | will attempt to kill all subprocesses of pid=1289491
[2026-03-04 10:12:29] 2026-03-04 08:11:58,410 | INFO     | process IDs to be killed: [1289491] (in reverse order)
[2026-03-04 10:12:29] 2026-03-04 08:11:58,439 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 10:12:29] 2026-03-04 08:11:58,439 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 10:12:29] 2026-03-04 08:11:58,441 | INFO     | did not find any defunct processes belonging to 1289491
[2026-03-04 10:12:29] 2026-03-04 08:11:58,444 | INFO     | did not find any defunct processes belonging to 1289491
[2026-03-04 10:12:29] 2026-03-04 08:11:58,444 | INFO     | ready for new job
[2026-03-04 10:12:29] 2026-03-04 08:11:58,444 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 10:12:29] 2026-03-04 08:11:58,444 | INFO     | **************************************
[2026-03-04 10:12:29] 2026-03-04 08:11:58,444 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 10:12:29] 2026-03-04 08:11:58,444 | INFO     | **************************************
[2026-03-04 10:12:29] 2026-03-04 08:11:58,444 | INFO     | 
[2026-03-04 10:12:29] 2026-03-04 08:11:58,445 | INFO     | architecture information:
[2026-03-04 10:12:29] 2026-03-04 08:11:58,445 | INFO     | executing command: cat /etc/os-release
[2026-03-04 10:12:29] 2026-03-04 08:11:58,451 | INFO     | cat /etc/os-release:
[2026-03-04 10:12:29] NAME="CentOS Linux"
[2026-03-04 10:12:29] VERSION="7 (Core)"
[2026-03-04 10:12:29] ID="centos"
[2026-03-04 10:12:29] ID_LIKE="rhel fedora"
[2026-03-04 10:12:29] VERSION_ID="7"
[2026-03-04 10:12:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 10:12:29] ANSI_COLOR="0;31"
[2026-03-04 10:12:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 10:12:29] HOME_URL="https://www.centos.org/"
[2026-03-04 10:12:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 10:12:29] 
[2026-03-04 10:12:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 10:12:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 10:12:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 10:12:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 10:12:29] 
[2026-03-04 10:12:29] 2026-03-04 08:11:58,451 | INFO     | **************************************
[2026-03-04 10:12:29] 2026-03-04 08:11:58,953 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-03-04 10:12:29] 2026-03-04 08:11:58,960 | INFO     | sufficient remaining disk space (61228449792 B)
[2026-03-04 10:12:29] 2026-03-04 08:11:58,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 10:12:29] 2026-03-04 08:11:58,961 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 10:12:29] 2026-03-04 08:11:58,961 | INFO     | update_server=False
[2026-03-04 10:12:29] 2026-03-04 08:11:58,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 10:12:29] 2026-03-04 08:11:58,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 10:12:29] 2026-03-04 08:11:58,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 10:12:29] 2026-03-04 08:11:58,974 | INFO     | all job control threads have been joined
[2026-03-04 10:12:29] 2026-03-04 08:11:59,235 | INFO     | all data control threads have been joined
[2026-03-04 10:12:29] 2026-03-04 08:11:59,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 10:12:29] 2026-03-04 08:11:59,820 | INFO     | all payload control threads have been joined
[2026-03-04 10:12:29] 2026-03-04 08:11:59,966 | INFO     | [job] retrieve thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:11:59,966 | INFO     | [job] queue monitor thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:11:59,979 | INFO     | [job] control thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:00,029 | INFO     | [job] validate thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:00,082 | WARNING  | process 1289491 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 10:12:29] 2026-03-04 08:12:00,137 | INFO     | using path: /home/ek/BOINC/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 10:12:29] 2026-03-04 08:12:00,221 | INFO     | number of running child processes to parent process 1289491: 1
[2026-03-04 10:12:29] 2026-03-04 08:12:00,221 | INFO     | maximum number of monitored processes: 6
[2026-03-04 10:12:29] 2026-03-04 08:12:00,221 | INFO     | aborting job monitoring since job object (job id=7036056623) has expired
[2026-03-04 10:12:29] 2026-03-04 08:12:00,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 10:12:29] 2026-03-04 08:12:00,221 | INFO     | will abort loop
[2026-03-04 10:12:29] 2026-03-04 08:12:00,240 | INFO     | [data] control thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:00,272 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:00,284 | INFO     | [data] copytool_in thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:00,337 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:00,391 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:00,819 | INFO     | [payload] validate_post thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:00,825 | INFO     | [payload] control thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:01,227 | INFO     | [job] job monitor thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:01,378 | INFO     | [payload] failed_post thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:01,473 | INFO     | [data] copytool_out thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:02,967 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:09,423 | INFO     | job.realtimelogging is not enabled
[2026-03-04 10:12:29] 2026-03-04 08:12:10,425 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 10:12:29] 2026-03-04 08:12:11,154 | INFO     | [monitor] cgroup control has ended
[2026-03-04 10:12:29] 2026-03-04 08:12:12,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139865905555264)>', '<ExcThread(monitor, started 139865140229888)>']
[2026-03-04 10:12:29] 2026-03-04 08:12:17,348 | INFO     | all workflow threads have been joined
[2026-03-04 10:12:29] 2026-03-04 08:12:17,348 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 10:12:29] 2026-03-04 08:12:17,348 | INFO     | traces error code: 0
[2026-03-04 10:12:29] 2026-03-04 08:12:17,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 10:12:29] 2026-03-04 08:12:29,473 | INFO     | PID=1284855 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 10:12:29] 2026-03-04 08:12:29,473 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 10:12:29] 2026-03-04 08:12:29,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 10:12:29] 2026-03-04 08:12:29,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 10:12:29] 2026-03-04 08:12:29,473 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 10:12:29] 2026-03-04 08:12:29,473 | INFO     | [monitor] control thread has ended
[2026-03-04 10:12:29] 2026-03-04 08:12:29,511 [wrapper] ==== pilot stdout END ====
[2026-03-04 10:12:29] 2026-03-04 08:12:29,512 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 10:12:29] 2026-03-04 08:12:29,514 [wrapper] pilotpid: 1284855
[2026-03-04 10:12:29] 2026-03-04 08:12:29,515 [wrapper] Pilot exit status: 0
[2026-03-04 10:12:29] 2026-03-04 08:12:29,520 [wrapper] pandaids: 7036056623
[2026-03-04 10:12:29] 2026-03-04 08:12:29,541 [wrapper] cleanup supervisor_pilot 1334022 1284856
[2026-03-04 10:12:29] 2026-03-04 08:12:29,542 [wrapper] Test setup, not cleaning
[2026-03-04 10:12:29] 2026-03-04 08:12:29,544 [wrapper] apfmon messages muted
[2026-03-04 10:12:29] 2026-03-04 08:12:29,545 [wrapper] ==== wrapper stdout END ====
[2026-03-04 10:12:29] 2026-03-04 08:12:29,546 [wrapper] ==== wrapper stderr END ====
[2026-03-04 10:12:29]  *** Error codes and diagnostics ***
[2026-03-04 10:12:29]     "exeErrorCode": 0,
[2026-03-04 10:12:29]     "exeErrorDiag": "",
[2026-03-04 10:12:29]     "pilotErrorCode": 0,
[2026-03-04 10:12:29]     "pilotErrorDiag": "",
[2026-03-04 10:12:29]  *** Listing of results directory ***
[2026-03-04 10:12:29] total 488680
[2026-03-04 10:12:29] -rw-r--r-- 1 ek ek    584627 Mar  2 19:50 pilot3.tar.gz
[2026-03-04 10:12:29] -rw-r--r-- 1 ek ek      5111 Mar  2 20:01 queuedata.json
[2026-03-04 10:12:29] -rwx------ 1 ek ek     36322 Mar  2 20:02 runpilot2-wrapper.sh
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek       100 Mar  4 09:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 10:12:29] -rwxr-xr-x 1 ek ek      7986 Mar  4 09:05 run_atlas
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek       105 Mar  4 09:05 job.xml
[2026-03-04 10:12:29] -rw-r--r-- 2 ek ek 280045822 Mar  4 09:05 EVNT.48220221._000073.pool.root.1
[2026-03-04 10:12:29] -rw-r--r-- 2 ek ek    597948 Mar  4 09:05 input.tar.gz
[2026-03-04 10:12:29] -rw-r--r-- 2 ek ek     15845 Mar  4 09:05 start_atlas.sh
[2026-03-04 10:12:29] drwxrwx--x 2 ek ek      4096 Mar  4 09:05 shared
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek         0 Mar  4 09:05 boinc_setup_complete
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek      9840 Mar  4 09:05 init_data.xml
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek         0 Mar  4 09:05 boinc_lockfile
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek      2561 Mar  4 09:05 pandaJob.out
[2026-03-04 10:12:29] -rw------- 1 ek ek        50 Mar  4 09:05 setup.sh.local
[2026-03-04 10:12:29] -rw------- 1 ek ek    997749 Mar  4 09:06 agis_schedconf.cvmfs.json
[2026-03-04 10:12:29] -rw------- 1 ek ek   1516092 Mar  4 09:06 agis_ddmendpoints.agis.ALL.json
[2026-03-04 10:12:29] -rw------- 1 ek ek       432 Mar  4 09:06 workernode_map.json
[2026-03-04 10:12:29] drwx------ 5 ek ek      4096 Mar  4 09:06 pilot3
[2026-03-04 10:12:29] -rw------- 1 ek ek        95 Mar  4 10:11 pilot_heartbeat.json
[2026-03-04 10:12:29] -rw------- 1 ek ek 214739020 Mar  4 10:11 HITS.48838586._001881.pool.root.1
[2026-03-04 10:12:29] -rw------- 1 ek ek      1018 Mar  4 10:11 memory_monitor_summary.json
[2026-03-04 10:12:29] -rw------- 1 ek ek    256424 Mar  4 10:11 log.48838586._001881.job.log.tgz.1
[2026-03-04 10:12:29] -rw------- 1 ek ek      6302 Mar  4 10:11 heartbeat.json
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek       529 Mar  4 10:11 boinc_task_state.xml
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek        27 Mar  4 10:12 wrapper_checkpoint.txt
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek      8192 Mar  4 10:12 boinc_mmap_file
[2026-03-04 10:12:29] -rw------- 1 ek ek       747 Mar  4 10:12 pilotlog.txt
[2026-03-04 10:12:29] -rw------- 1 ek ek    588975 Mar  4 10:12 log.48838586._001881.job.log.1
[2026-03-04 10:12:29] -rw------- 1 ek ek       357 Mar  4 10:12 output.list
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek       620 Mar  4 10:12 runtime_log
[2026-03-04 10:12:29] -rw------- 1 ek ek    860160 Mar  4 10:12 result.tar.gz
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek      9501 Mar  4 10:12 runtime_log.err
[2026-03-04 10:12:29] -rw------- 1 ek ek       659 Mar  4 10:12 0WQMDmEmMH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcHCLDmFl4POo.diag
[2026-03-04 10:12:29] -rw-rw-r-- 1 ek ek     21267 Mar  4 10:12 stderr.txt
[2026-03-04 10:12:29] HITS file was successfully produced:
[2026-03-04 10:12:29] -rw------- 1 ek ek 214739020 Mar  4 10:11 shared/HITS.pool.root.1
[2026-03-04 10:12:29]  *** Contents of shared directory: ***
[2026-03-04 10:12:29] total 484640
[2026-03-04 10:12:29] -rw-r--r-- 2 ek ek 280045822 Mar  4 09:05 ATLAS.root_0
[2026-03-04 10:12:29] -rw-r--r-- 2 ek ek    597948 Mar  4 09:05 input.tar.gz
[2026-03-04 10:12:29] -rw-r--r-- 2 ek ek     15845 Mar  4 09:05 start_atlas.sh
[2026-03-04 10:12:29] -rw------- 1 ek ek 214739020 Mar  4 10:11 HITS.pool.root.1
[2026-03-04 10:12:29] -rw------- 1 ek ek    860160 Mar  4 10:12 result.tar.gz
10:12:31 (1281025): run_atlas exited; CPU time 15148.288997
10:12:31 (1281025): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN