Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:25:54 (3422143): wrapper (7.7.26015): starting
09:25:54 (3422143): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 09:25:54] Arguments: --nthreads 4
[2026-03-03 09:25:54] Threads: 4
[2026-03-03 09:25:54] Checking for CVMFS
[2026-03-03 09:25:54] No cvmfs_config command found, will try listing directly
[2026-03-03 09:25:54] CVMFS is ok
[2026-03-03 09:25:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 09:25:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 09:25:54] Further information can be found at the LHC@home message board.
[2026-03-03 09:25:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 09:25:54] Checking for apptainer binary...
[2026-03-03 09:25:54] which: no apptainer in ((null))
[2026-03-03 09:25:54] apptainer is not installed, using version from CVMFS
[2026-03-03 09:25:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 09:25:54] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-03 09:25:54] apptainer works
[2026-03-03 09:25:54] Set ATHENA_PROC_NUMBER=4
[2026-03-03 09:25:54] Set ATHENA_CORE_NUMBER=4
[2026-03-03 09:25:54] Starting ATLAS job with PandaID=7036056341
[2026-03-03 09:25:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:35:06]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:35:06]  mtime=0
[2026-03-03 10:35:06]  protocol_id=None
[2026-03-03 10:35:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 10:35:06]  replicas=None
[2026-03-03 10:35:06]  scope=mc23_13p6TeV
[2026-03-03 10:35:06]  status=None
[2026-03-03 10:35:06]  status_code=0
[2026-03-03 10:35:06]  storage_token=
[2026-03-03 10:35:06]  surl=/var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7036056341/log.48700890._001620.job.log.tgz.1
[2026-03-03 10:35:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/6f/log.48700890._001620.job.log.tgz.1
[2026-03-03 10:35:06]  workdir=None
[2026-03-03 10:35:06] ]
[2026-03-03 10:35:06] 2026-03-03 09:31:02,689 | INFO     | time since job start (3893s) is within the limit (349056.0s)
[2026-03-03 10:35:06] 2026-03-03 09:31:02,704 | INFO     | transferring file log.48700890._001620.job.log.tgz.1 from /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7036056341/log.48700890._001620.job.log.tgz.1 to /var/lib/b
[2026-03-03 10:35:06] 2026-03-03 09:31:02,704 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7036056341/log.48700890._001620.job.log.tgz.1 /var/lib/boinc/var/slot84/slots/0/lo
[2026-03-03 10:35:06] 2026-03-03 09:31:02,724 | INFO     | adding to output.list: log.48700890._001620.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/6f/log.48700890._001620.job.log.tg
[2026-03-03 10:35:06] 2026-03-03 09:31:02,725 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 10:35:06] 2026-03-03 09:31:02,725 | INFO     | summary of transferred files:
[2026-03-03 10:35:06] 2026-03-03 09:31:02,725 | INFO     |  -- lfn=log.48700890._001620.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 10:35:06] 2026-03-03 09:31:02,725 | INFO     | stage-out finished correctly
[2026-03-03 10:35:06] 2026-03-03 09:31:04,313 | INFO     | PID=3439010 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 10:35:06] 2026-03-03 09:31:04,313 | INFO     | .. there are 45 such processes running
[2026-03-03 10:35:06] 2026-03-03 09:31:04,690 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 10:35:06] 2026-03-03 09:31:05,313 | INFO     | time since job start (3896s) is within the limit (349056.0s)
[2026-03-03 10:35:06] 2026-03-03 09:31:06,045 | WARNING  | process 3463351 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 10:35:06] 2026-03-03 09:31:06,046 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7036056341/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:35:06] 2026-03-03 09:31:06,522 | INFO     | number of running child processes to parent process 3463351: 1
[2026-03-03 10:35:06] 2026-03-03 09:31:06,522 | INFO     | maximum number of monitored processes: 6
[2026-03-03 10:35:06] 2026-03-03 09:31:07,318 | INFO     | time since job start (3898s) is within the limit (349056.0s)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,600 | INFO     | job 7036056341 has state=finished
[2026-03-03 10:35:06] 2026-03-03 09:31:07,600 | INFO     | preparing for final server update for job 7036056341 in state='finished'
[2026-03-03 10:35:06] 2026-03-03 09:31:07,600 | INFO     | reading metadata from: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7036056341/jobReport.json
[2026-03-03 10:35:06] 2026-03-03 09:31:07,602 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot84/slots/0/workernode_map.json
[2026-03-03 10:35:06] 2026-03-03 09:31:07,602 | INFO     | this job has now completed (state=finished)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,602 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,602 | INFO     | log transfer has been attempted: DONE
[2026-03-03 10:35:06] 2026-03-03 09:31:07,602 | INFO     | job 7036056341 has finished - writing final server update
[2026-03-03 10:35:06] 2026-03-03 09:31:07,602 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1643477/.job.ad'
[2026-03-03 10:35:06] 2026-03-03 09:31:07,602 | INFO     | total number of processed events: 400 (read)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,617 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7036056341/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,617 | INFO     | extracted standard info from prmon json
[2026-03-03 10:35:06] 2026-03-03 09:31:07,617 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:35:06] 2026-03-03 09:31:07,617 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:35:06] 2026-03-03 09:31:07,617 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:35:06] 2026-03-03 09:31:07,617 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | fitting pss+swap vs Time
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | sum of square deviations: 57407588.0
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | sum of deviations: -1575807266.0
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | mean x: 1772528405.0
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | mean y: 2360702.789473684
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | intersect: 48657307498.157196
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | chi2: 0.0019914345443489295
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | current memory leak: -27.45 B/s (using 57 data points, chi2=0.00)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,618 | INFO     | could have reported an average CPU frequency of 3571 MHz (6 samples)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | ..............................
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | . Timing measurements:
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | . get job = 0 s
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | . initial setup = 5 s
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | . payload setup = 5 s
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | . stage-in = 0 s
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | . payload execution = 3871 s
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | . stage-out = 0 s
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | . log creation = 0 s
[2026-03-03 10:35:06] 2026-03-03 09:31:07,619 | INFO     | ..............................
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | 
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | job summary report
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | --------------------------------------------------
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | PanDA job id: 7036056341
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | task id: 48700890
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | errors: (none)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | pilot state: finished 
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | transexitcode: 0
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | exeerrorcode: 0
[2026-03-03 10:35:06] 2026-03-03 09:31:07,647 | INFO     | exeerrordiag: 
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | exitcode: 0
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | exitmsg: OK
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | cpuconsumptiontime: 14799 s
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | nevents: 400
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | neventsw: 0
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | pid: 3463351
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | pgrp: 3463351
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | corecount: 4
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | event service: False
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | sizes: {0: 2281959, 1: 2282165, 11: 2282193, 3881: 2308108, 3883: 2317128, 3884: 2317184, 3887: 2317506}
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | --------------------------------------------------
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | 
[2026-03-03 10:35:06] 2026-03-03 09:31:07,648 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/0
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,665 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,666 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,666 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:35:06] 2026-03-03 09:31:07,666 | INFO     | job 7036056341 has completed (purged errors)
[2026-03-03 10:35:06] 2026-03-03 09:31:07,666 | INFO     | overall cleanup function is called
[2026-03-03 10:35:06] 2026-03-03 09:31:08,672 | INFO     | --- collectZombieJob: --- 10, [3463351]
[2026-03-03 10:35:06] 2026-03-03 09:31:08,672 | INFO     | zombie collector waiting for pid 3463351
[2026-03-03 10:35:06] 2026-03-03 09:31:08,672 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:35:06] 2026-03-03 09:31:08,672 | INFO     | collected zombie processes
[2026-03-03 10:35:06] 2026-03-03 09:31:08,673 | INFO     | will attempt to kill all subprocesses of pid=3463351
[2026-03-03 10:35:06] 2026-03-03 09:31:09,162 | INFO     | process IDs to be killed: [3463351] (in reverse order)
[2026-03-03 10:35:06] 2026-03-03 09:31:09,396 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:35:06] 2026-03-03 09:31:09,397 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:35:06] 2026-03-03 09:31:09,427 | INFO     | did not find any defunct processes belonging to 3463351
[2026-03-03 10:35:06] 2026-03-03 09:31:09,456 | INFO     | did not find any defunct processes belonging to 3463351
[2026-03-03 10:35:06] 2026-03-03 09:31:09,457 | INFO     | ready for new job
[2026-03-03 10:35:06] 2026-03-03 09:31:09,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:35:06] 2026-03-03 09:31:09,458 | INFO     | **************************************
[2026-03-03 10:35:06] 2026-03-03 09:31:09,458 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:35:06] 2026-03-03 09:31:09,458 | INFO     | **************************************
[2026-03-03 10:35:06] 2026-03-03 09:31:09,458 | INFO     | 
[2026-03-03 10:35:06] 2026-03-03 09:31:09,463 | INFO     | architecture information:
[2026-03-03 10:35:06] 2026-03-03 09:31:09,463 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:35:06] 2026-03-03 09:31:09,478 | INFO     | cat /etc/os-release:
[2026-03-03 10:35:06] NAME="CentOS Linux"
[2026-03-03 10:35:06] VERSION="7 (Core)"
[2026-03-03 10:35:06] ID="centos"
[2026-03-03 10:35:06] ID_LIKE="rhel fedora"
[2026-03-03 10:35:06] VERSION_ID="7"
[2026-03-03 10:35:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:35:06] ANSI_COLOR="0;31"
[2026-03-03 10:35:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:35:06] HOME_URL="https://www.centos.org/"
[2026-03-03 10:35:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:35:06] 
[2026-03-03 10:35:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:35:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:35:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:35:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:35:06] 
[2026-03-03 10:35:06] 2026-03-03 09:31:09,479 | INFO     | **************************************
[2026-03-03 10:35:06] 2026-03-03 09:31:09,981 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/0
[2026-03-03 10:35:06] 2026-03-03 09:31:09,999 | INFO     | sufficient remaining disk space (230220103680 B)
[2026-03-03 10:35:06] 2026-03-03 09:31:09,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:35:06] 2026-03-03 09:31:09,999 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:35:06] 2026-03-03 09:31:09,999 | INFO     | update_server=False
[2026-03-03 10:35:06] 2026-03-03 09:31:09,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:35:06] 2026-03-03 09:31:10,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:35:06] 2026-03-03 09:31:10,031 | INFO     | aborting loop
[2026-03-03 10:35:06] 2026-03-03 09:31:10,522 | INFO     | all data control threads have been joined
[2026-03-03 10:35:06] 2026-03-03 09:31:10,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:35:06] 2026-03-03 09:31:10,744 | INFO     | all payload control threads have been joined
[2026-03-03 10:35:06] 2026-03-03 09:31:10,783 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:35:06] 2026-03-03 09:31:11,000 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:11,036 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:11,146 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:11,252 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:11,527 | INFO     | [data] control thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:11,560 | INFO     | all job control threads have been joined
[2026-03-03 10:35:06] 2026-03-03 09:31:11,613 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:11,749 | INFO     | [payload] control thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:12,455 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:12,461 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:12,472 | INFO     | [job] validate thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:12,493 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:12,565 | INFO     | [job] control thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:12,657 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:35:06] 2026-03-03 09:31:12,788 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:13,662 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:14,730 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:15,177 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:35:06] 2026-03-03 09:31:20,936 | INFO     | job.realtimelogging is not enabled
[2026-03-03 10:35:06] 2026-03-03 09:31:21,941 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:35:06] 2026-03-03 09:31:23,458 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23383293384512)>', '<ExcThread(monitor, started 23383048980224)>']
[2026-03-03 10:35:06] 2026-03-03 09:31:28,483 | INFO     | all workflow threads have been joined
[2026-03-03 10:35:06] 2026-03-03 09:31:28,483 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:35:06] 2026-03-03 09:31:28,483 | INFO     | traces error code: 0
[2026-03-03 10:35:06] 2026-03-03 09:31:28,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:35:06] 2026-03-03 09:31:40,996 | INFO     | PID=3439010 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 10:35:06] 2026-03-03 09:31:40,996 | INFO     | .. there are 45 such processes running
[2026-03-03 10:35:06] 2026-03-03 09:31:40,997 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:35:06] 2026-03-03 09:31:40,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:35:06] 2026-03-03 09:31:40,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:35:06] 2026-03-03 09:31:40,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:35:06] 2026-03-03 09:31:40,997 | INFO     | [monitor] control thread has ended
[2026-03-03 10:35:06] 2026-03-03 09:31:41,124 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:35:06] 2026-03-03 09:31:41,128 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:35:06] 2026-03-03 09:31:41,130 [wrapper] pilotpid: 3439010
[2026-03-03 10:35:06] 2026-03-03 09:31:41,134 [wrapper] Pilot exit status: 0
[2026-03-03 10:35:06] 2026-03-03 09:31:41,144 [wrapper] pandaids: 7036056341
[2026-03-03 10:35:06] 2026-03-03 09:31:41,284 [wrapper] cleanup supervisor_pilot 3749139 3439011
[2026-03-03 10:35:06] 2026-03-03 09:31:41,287 [wrapper] Test setup, not cleaning
[2026-03-03 10:35:06] 2026-03-03 09:31:41,290 [wrapper] apfmon messages muted
[2026-03-03 10:35:06] 2026-03-03 09:31:41,292 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:35:06] 2026-03-03 09:31:41,294 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:35:06]  *** Error codes and diagnostics ***
[2026-03-03 10:35:06]     "exeErrorCode": 0,
[2026-03-03 10:35:06]     "exeErrorDiag": "",
[2026-03-03 10:35:06]     "pilotErrorCode": 0,
[2026-03-03 10:35:06]     "pilotErrorDiag": "",
[2026-03-03 10:35:06]  *** Listing of results directory ***
[2026-03-03 10:35:06] total 335452
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc    584627 Mar  2 18:50 pilot3.tar.gz
[2026-03-03 10:35:06] -rwx------. 1 boinc boinc     36322 Mar  2 19:01 runpilot2-wrapper.sh
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc      5111 Mar  2 19:01 queuedata.json
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc       100 Mar  3 09:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:35:06] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 09:25 run_atlas
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc       105 Mar  3 09:25 job.xml
[2026-03-03 10:35:06] -rw-r--r--. 2 boinc boinc     15845 Mar  3 09:25 start_atlas.sh
[2026-03-03 10:35:06] drwxrwx--x. 2 boinc boinc      4096 Mar  3 09:25 shared
[2026-03-03 10:35:06] -rw-r--r--. 2 boinc boinc    597930 Mar  3 09:25 input.tar.gz
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc      6704 Mar  3 09:25 init_data.xml
[2026-03-03 10:35:06] -rw-r--r--. 2 boinc boinc 192674423 Mar  3 09:25 EVNT.48700888._000067.pool.root.1
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc         0 Mar  3 09:25 boinc_lockfile
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc      2511 Mar  3 09:25 pandaJob.out
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc    998420 Mar  3 09:26 agis_schedconf.cvmfs.json
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc   1512931 Mar  3 09:26 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc       443 Mar  3 09:26 workernode_map.json
[2026-03-03 10:35:06] drwx------. 5 boinc boinc      4096 Mar  3 09:26 pilot3
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc 145222132 Mar  3 10:30 HITS.48700890._001620.pool.root.1
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc       527 Mar  3 10:30 boinc_task_state.xml
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc      1027 Mar  3 10:30 memory_monitor_summary.json
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc    262125 Mar  3 10:31 log.48700890._001620.job.log.tgz.1
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc      6349 Mar  3 10:31 heartbeat.json
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc       823 Mar  3 10:31 pilotlog.txt
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc        95 Mar  3 10:31 pilot_heartbeat.json
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc    580211 Mar  3 10:31 log.48700890._001620.job.log.1
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc       357 Mar  3 10:31 output.list
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc       620 Mar  3 10:31 runtime_log
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc    860160 Mar  3 10:31 result.tar.gz
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc      9204 Mar  3 10:31 runtime_log.err
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc       663 Mar  3 10:31 oQ1MDmSlMH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcDCLDmABns6n.diag
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc        25 Mar  3 10:34 wrapper_checkpoint.txt
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc      8192 Mar  3 10:35 boinc_mmap_file
[2026-03-03 10:35:06] -rw-r--r--. 1 boinc boinc     21675 Mar  3 10:35 stderr.txt
[2026-03-03 10:35:06] HITS file was successfully produced:
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc 145222132 Mar  3 10:30 shared/HITS.pool.root.1
[2026-03-03 10:35:06]  *** Contents of shared directory: ***
[2026-03-03 10:35:06] total 331428
[2026-03-03 10:35:06] -rw-r--r--. 2 boinc boinc     15845 Mar  3 09:25 start_atlas.sh
[2026-03-03 10:35:06] -rw-r--r--. 2 boinc boinc    597930 Mar  3 09:25 input.tar.gz
[2026-03-03 10:35:06] -rw-r--r--. 2 boinc boinc 192674423 Mar  3 09:25 ATLAS.root_0
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc 145222132 Mar  3 10:30 HITS.pool.root.1
[2026-03-03 10:35:06] -rw-------. 1 boinc boinc    860160 Mar  3 10:31 result.tar.gz
10:35:07 (3422143): run_atlas exited; CPU time 14961.252052
10:35:07 (3422143): called boinc_finish(0)

</stderr_txt>
]]>

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