Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:52:55 (3542377): wrapper (7.7.26015): starting
03:52:55 (3542377): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 03:52:55] Arguments: --nthreads 4
[2026-03-04 03:52:55] Threads: 4
[2026-03-04 03:52:55] Checking for CVMFS
[2026-03-04 03:52:55] No cvmfs_config command found, will try listing directly
[2026-03-04 03:52:55] CVMFS is ok
[2026-03-04 03:52:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 03:52:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 03:52:55] Further information can be found at the LHC@home message board.
[2026-03-04 03:52:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 03:52:55] Checking for apptainer binary...
[2026-03-04 03:52:55] which: no apptainer in ((null))
[2026-03-04 03:52:55] apptainer is not installed, using version from CVMFS
[2026-03-04 03:52:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 03:52:55] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-04 03:52:55] apptainer works
[2026-03-04 03:52:55] Set ATHENA_PROC_NUMBER=4
[2026-03-04 03:52:55] Set ATHENA_CORE_NUMBER=4
[2026-03-04 03:52:55] Starting ATLAS job with PandaID=7036120275
[2026-03-04 03:52:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 07:16:34]  *** The last 200 lines of the pilot log: ***
[2026-03-04 07:16:34] 2026-03-04 06:15:37,175 | INFO     | job 7036120275 has state=finished
[2026-03-04 07:16:34] 2026-03-04 06:15:37,175 | INFO     | preparing for final server update for job 7036120275 in state='finished'
[2026-03-04 07:16:34] 2026-03-04 06:15:37,175 | INFO     | reading metadata from: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7036120275/jobReport.json
[2026-03-04 07:16:34] 2026-03-04 06:15:37,177 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot180/slots/0/workernode_map.json
[2026-03-04 07:16:34] 2026-03-04 06:15:37,177 | INFO     | this job has now completed (state=finished)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,177 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,177 | INFO     | log transfer has been attempted: DONE
[2026-03-04 07:16:34] 2026-03-04 06:15:37,177 | INFO     | job 7036120275 has finished - writing final server update
[2026-03-04 07:16:34] 2026-03-04 06:15:37,177 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_499655/.job.ad'
[2026-03-04 07:16:34] 2026-03-04 06:15:37,177 | INFO     | total number of processed events: 400 (read)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,194 | INFO     | using path: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7036120275/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,194 | INFO     | extracted standard info from prmon json
[2026-03-04 07:16:34] 2026-03-04 06:15:37,194 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 07:16:34] 2026-03-04 06:15:37,194 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 07:16:34] 2026-03-04 06:15:37,195 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 07:16:34] 2026-03-04 06:15:37,195 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 07:16:34] 2026-03-04 06:15:37,197 | INFO     | fitting pss+swap vs Time
[2026-03-04 07:16:34] 2026-03-04 06:15:37,197 | INFO     | sum of square deviations: 2443580700.0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,198 | INFO     | sum of deviations: 25368156803.000004
[2026-03-04 07:16:34] 2026-03-04 06:15:37,198 | INFO     | mean x: 1772598849.0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,198 | INFO     | mean y: 2311265.7587939696
[2026-03-04 07:16:34] 2026-03-04 06:15:37,198 | INFO     | intersect: -18400013466.241802
[2026-03-04 07:16:34] 2026-03-04 06:15:37,198 | INFO     | chi2: 1.0934707587263617
[2026-03-04 07:16:34] 2026-03-04 06:15:37,198 | INFO     | sum of square deviations: 2263977332.5
[2026-03-04 07:16:34] 2026-03-04 06:15:37,199 | INFO     | sum of deviations: 24589162891.0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,199 | INFO     | mean x: 1772598696.5
[2026-03-04 07:16:34] 2026-03-04 06:15:37,199 | INFO     | mean y: 2310604.206185567
[2026-03-04 07:16:34] 2026-03-04 06:15:37,199 | INFO     | intersect: -19249966113.81293
[2026-03-04 07:16:34] 2026-03-04 06:15:37,199 | INFO     | chi2: 1.0938747052782896
[2026-03-04 07:16:34] 2026-03-04 06:15:37,199 | INFO     | current chi2=1.0938747052782896 (change=-0.03694168762211658 %)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,199 | INFO     | right removable region: 193
[2026-03-04 07:16:34] 2026-03-04 06:15:37,199 | INFO     | sum of square deviations: 2263977332.5
[2026-03-04 07:16:34] 2026-03-04 06:15:37,200 | INFO     | sum of deviations: 5477843889.499998
[2026-03-04 07:16:34] 2026-03-04 06:15:37,200 | INFO     | mean x: 1772599001.5
[2026-03-04 07:16:34] 2026-03-04 06:15:37,200 | INFO     | mean y: 2327898.6340206186
[2026-03-04 07:16:34] 2026-03-04 06:15:37,200 | INFO     | intersect: -4286593403.4968047
[2026-03-04 07:16:34] 2026-03-04 06:15:37,200 | INFO     | chi2: 0.0007015796374645383
[2026-03-04 07:16:34] 2026-03-04 06:15:37,200 | INFO     | current chi2=0.0007015796374645383 (change=99.93583919534514 %)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,200 | INFO     | sum of square deviations: 2093397390.0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,201 | INFO     | sum of deviations: 4910482736.999998
[2026-03-04 07:16:34] 2026-03-04 06:15:37,201 | INFO     | mean x: 1772599154.0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,201 | INFO     | mean y: 2328404.6772486772
[2026-03-04 07:16:34] 2026-03-04 06:15:37,201 | INFO     | intersect: -4155657836.6917644
[2026-03-04 07:16:34] 2026-03-04 06:15:37,201 | INFO     | chi2: 0.0006629982988191335
[2026-03-04 07:16:34] 2026-03-04 06:15:37,201 | INFO     | current chi2=0.0006629982988191335 (change=5.499210151656504 %)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,201 | INFO     | left removable region: 20
[2026-03-04 07:16:34] 2026-03-04 06:15:37,201 | INFO     | sum of square deviations: 1605470102.0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | sum of deviations: 3961377270.9999995
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | mean x: 1772599276.0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | mean y: 2328811.075144509
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | intersect: -4371427183.377784
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | chi2: 0.0004661113113397517
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | current memory leak: 2.47 B/s (using 173 data points, chi2=0.00)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | could have reported an average CPU frequency of 3562 MHz (10 samples)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | ..............................
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | . Timing measurements:
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | . get job = 0 s
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | . initial setup = 5 s
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | . payload setup = 5 s
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | . stage-in = 0 s
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | . payload execution = 12123 s
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | . stage-out = 0 s
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | . log creation = 0 s
[2026-03-04 07:16:34] 2026-03-04 06:15:37,202 | INFO     | ..............................
[2026-03-04 07:16:34] 2026-03-04 06:15:37,247 | INFO     | 
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | job summary report
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | --------------------------------------------------
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | PanDA job id: 7036120275
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | task id: 48848615
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | errors: (none)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | pilot state: finished 
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | transexitcode: 0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | exeerrorcode: 0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | exeerrordiag: 
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | exitcode: 0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | exitmsg: OK
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | cpuconsumptiontime: 47117 s
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | nevents: 400
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | neventsw: 0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | pid: 3552886
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | pgrp: 3552886
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | corecount: 4
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | event service: False
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | sizes: {0: 2287144, 11: 2287144, 12132: 2316745, 12133: 2325767, 12137: 2326017}
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | --------------------------------------------------
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | 
[2026-03-04 07:16:34] 2026-03-04 06:15:37,248 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/0
[2026-03-04 07:16:34] 2026-03-04 06:15:37,268 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 07:16:34] 2026-03-04 06:15:37,269 | INFO     | job 7036120275 has completed (purged errors)
[2026-03-04 07:16:34] 2026-03-04 06:15:37,270 | INFO     | overall cleanup function is called
[2026-03-04 07:16:34] 2026-03-04 06:15:38,277 | INFO     | --- collectZombieJob: --- 10, [3552886]
[2026-03-04 07:16:34] 2026-03-04 06:15:38,277 | INFO     | zombie collector waiting for pid 3552886
[2026-03-04 07:16:34] 2026-03-04 06:15:38,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 07:16:34] 2026-03-04 06:15:38,277 | INFO     | collected zombie processes
[2026-03-04 07:16:34] 2026-03-04 06:15:38,277 | INFO     | will attempt to kill all subprocesses of pid=3552886
[2026-03-04 07:16:34] 2026-03-04 06:15:38,713 | INFO     | process IDs to be killed: [3552886] (in reverse order)
[2026-03-04 07:16:34] 2026-03-04 06:15:38,908 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 07:16:34] 2026-03-04 06:15:38,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 07:16:34] 2026-03-04 06:15:38,938 | INFO     | did not find any defunct processes belonging to 3552886
[2026-03-04 07:16:34] 2026-03-04 06:15:38,966 | INFO     | did not find any defunct processes belonging to 3552886
[2026-03-04 07:16:34] 2026-03-04 06:15:38,967 | INFO     | ready for new job
[2026-03-04 07:16:34] 2026-03-04 06:15:38,967 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 07:16:34] 2026-03-04 06:15:38,968 | INFO     | **************************************
[2026-03-04 07:16:34] 2026-03-04 06:15:38,968 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 07:16:34] 2026-03-04 06:15:38,968 | INFO     | **************************************
[2026-03-04 07:16:34] 2026-03-04 06:15:38,968 | INFO     | 
[2026-03-04 07:16:34] 2026-03-04 06:15:38,975 | INFO     | architecture information:
[2026-03-04 07:16:34] 2026-03-04 06:15:38,975 | INFO     | executing command: cat /etc/os-release
[2026-03-04 07:16:34] 2026-03-04 06:15:38,986 | INFO     | cat /etc/os-release:
[2026-03-04 07:16:34] NAME="CentOS Linux"
[2026-03-04 07:16:34] VERSION="7 (Core)"
[2026-03-04 07:16:34] ID="centos"
[2026-03-04 07:16:34] ID_LIKE="rhel fedora"
[2026-03-04 07:16:34] VERSION_ID="7"
[2026-03-04 07:16:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 07:16:34] ANSI_COLOR="0;31"
[2026-03-04 07:16:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 07:16:34] HOME_URL="https://www.centos.org/"
[2026-03-04 07:16:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 07:16:34] 
[2026-03-04 07:16:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 07:16:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 07:16:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 07:16:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 07:16:34] 
[2026-03-04 07:16:34] 2026-03-04 06:15:38,987 | INFO     | **************************************
[2026-03-04 07:16:34] 2026-03-04 06:15:39,487 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/0
[2026-03-04 07:16:34] 2026-03-04 06:15:39,505 | INFO     | sufficient remaining disk space (20720910336 B)
[2026-03-04 07:16:34] 2026-03-04 06:15:39,505 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 07:16:34] 2026-03-04 06:15:39,505 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 07:16:34] 2026-03-04 06:15:39,505 | INFO     | update_server=False
[2026-03-04 07:16:34] 2026-03-04 06:15:39,505 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 07:16:34] 2026-03-04 06:15:39,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 07:16:34] 2026-03-04 06:15:39,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 07:16:34] 2026-03-04 06:15:40,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 07:16:34] 2026-03-04 06:15:40,111 | INFO     | aborting loop
[2026-03-04 07:16:34] 2026-03-04 06:15:40,264 | INFO     | all data control threads have been joined
[2026-03-04 07:16:34] 2026-03-04 06:15:40,355 | INFO     | all payload control threads have been joined
[2026-03-04 07:16:34] 2026-03-04 06:15:40,510 | INFO     | [job] retrieve thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:40,840 | INFO     | all job control threads have been joined
[2026-03-04 07:16:34] 2026-03-04 06:15:40,879 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,002 | INFO     | [job] validate thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,116 | INFO     | [job] job monitor thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,208 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,234 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,270 | INFO     | [data] control thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,361 | INFO     | [payload] control thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,511 | INFO     | [data] copytool_out thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,535 | INFO     | [payload] failed_post thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,709 | INFO     | [payload] validate_post thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,730 | INFO     | [data] copytool_in thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:41,846 | INFO     | [job] control thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:42,256 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 07:16:34] 2026-03-04 06:15:43,261 | INFO     | [job] queue monitor thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:43,511 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:15:50,177 | INFO     | job.realtimelogging is not enabled
[2026-03-04 07:16:34] 2026-03-04 06:15:51,182 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 07:16:34] 2026-03-04 06:16:09,248 | INFO     | PID=3546966 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 07:16:34] 2026-03-04 06:16:09,248 | INFO     | .. there are 40 such processes running
[2026-03-04 07:16:34] 2026-03-04 06:16:09,248 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 07:16:34] 2026-03-04 06:16:09,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 07:16:34] 2026-03-04 06:16:09,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 07:16:34] 2026-03-04 06:16:28,417 | INFO     | [monitor] cgroup control has ended
[2026-03-04 07:16:34] 2026-03-04 06:16:29,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23184638203712)>', '<ExcThread(monitor, started 23184396261120)>']
[2026-03-04 07:16:34] 2026-03-04 06:16:30,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 07:16:34] 2026-03-04 06:16:30,352 | INFO     | [monitor] control thread has ended
[2026-03-04 07:16:34] 2026-03-04 06:16:34,447 | INFO     | all workflow threads have been joined
[2026-03-04 07:16:34] 2026-03-04 06:16:34,448 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 07:16:34] 2026-03-04 06:16:34,448 | INFO     | traces error code: 0
[2026-03-04 07:16:34] 2026-03-04 06:16:34,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 07:16:34] 2026-03-04 06:16:34,554 [wrapper] ==== pilot stdout END ====
[2026-03-04 07:16:34] 2026-03-04 06:16:34,556 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 07:16:34] 2026-03-04 06:16:34,558 [wrapper] pilotpid: 3546966
[2026-03-04 07:16:34] 2026-03-04 06:16:34,560 [wrapper] Pilot exit status: 0
[2026-03-04 07:16:34] 2026-03-04 06:16:34,567 [wrapper] pandaids: 7036120275
[2026-03-04 07:16:34] 2026-03-04 06:16:34,692 [wrapper] cleanup supervisor_pilot  689077 3546967
[2026-03-04 07:16:34] 2026-03-04 06:16:34,695 [wrapper] Test setup, not cleaning
[2026-03-04 07:16:34] 2026-03-04 06:16:34,697 [wrapper] apfmon messages muted
[2026-03-04 07:16:34] 2026-03-04 06:16:34,700 [wrapper] ==== wrapper stdout END ====
[2026-03-04 07:16:34] 2026-03-04 06:16:34,702 [wrapper] ==== wrapper stderr END ====
[2026-03-04 07:16:34]  *** Error codes and diagnostics ***
[2026-03-04 07:16:34]     "exeErrorCode": 0,
[2026-03-04 07:16:34]     "exeErrorDiag": "",
[2026-03-04 07:16:34]     "pilotErrorCode": 0,
[2026-03-04 07:16:34]     "pilotErrorDiag": "",
[2026-03-04 07:16:34]  *** Listing of results directory ***
[2026-03-04 07:16:34] total 430344
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc    584627 Mar  2 20:44 pilot3.tar.gz
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc      5111 Mar  2 20:58 queuedata.json
[2026-03-04 07:16:34] -rwx------. 1 boinc boinc     36322 Mar  2 21:00 runpilot2-wrapper.sh
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc       100 Mar  4 03:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 07:16:34] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 03:52 run_atlas
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc       105 Mar  4 03:52 job.xml
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc      6708 Mar  4 03:52 init_data.xml
[2026-03-04 07:16:34] -rw-r--r--. 2 boinc boinc 222510472 Mar  4 03:52 EVNT.48455871._000001.pool.root.1
[2026-03-04 07:16:34] -rw-r--r--. 2 boinc boinc     15845 Mar  4 03:52 start_atlas.sh
[2026-03-04 07:16:34] drwxrwx--x. 2 boinc boinc      4096 Mar  4 03:52 shared
[2026-03-04 07:16:34] -rw-r--r--. 2 boinc boinc    597960 Mar  4 03:52 input.tar.gz
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc         0 Mar  4 03:52 boinc_lockfile
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc      2608 Mar  4 03:52 pandaJob.out
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc    998484 Mar  4 03:53 agis_schedconf.cvmfs.json
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc       444 Mar  4 03:53 workernode_map.json
[2026-03-04 07:16:34] drwx------. 5 boinc boinc      4096 Mar  4 03:53 pilot3
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc 210048748 Mar  4 07:15 HITS.48848615._000023.pool.root.1
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc        95 Mar  4 07:15 pilot_heartbeat.json
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc      1035 Mar  4 07:15 memory_monitor_summary.json
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc   1516092 Mar  4 07:15 agis_ddmendpoints.agis.ALL.json
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc    387647 Mar  4 07:15 log.48848615._000023.job.log.tgz.1
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc       529 Mar  4 07:15 boinc_task_state.xml
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc      6351 Mar  4 07:15 heartbeat.json
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc      8192 Mar  4 07:16 boinc_mmap_file
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc        27 Mar  4 07:16 wrapper_checkpoint.txt
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc      4902 Mar  4 07:16 pilotlog.txt
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc   1702556 Mar  4 07:16 log.48848615._000023.job.log.1
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc       357 Mar  4 07:16 output.list
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc       620 Mar  4 07:16 runtime_log
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc   2109440 Mar  4 07:16 result.tar.gz
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc      9222 Mar  4 07:16 runtime_log.err
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc       665 Mar  4 07:16 dYCMDmybOH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpjELDmYPGugn.diag
[2026-03-04 07:16:34] -rw-r--r--. 1 boinc boinc     21104 Mar  4 07:16 stderr.txt
[2026-03-04 07:16:34] HITS file was successfully produced:
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc 210048748 Mar  4 07:15 shared/HITS.pool.root.1
[2026-03-04 07:16:34]  *** Contents of shared directory: ***
[2026-03-04 07:16:34] total 425092
[2026-03-04 07:16:34] -rw-r--r--. 2 boinc boinc 222510472 Mar  4 03:52 ATLAS.root_0
[2026-03-04 07:16:34] -rw-r--r--. 2 boinc boinc     15845 Mar  4 03:52 start_atlas.sh
[2026-03-04 07:16:34] -rw-r--r--. 2 boinc boinc    597960 Mar  4 03:52 input.tar.gz
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc 210048748 Mar  4 07:15 HITS.pool.root.1
[2026-03-04 07:16:34] -rw-------. 1 boinc boinc   2109440 Mar  4 07:16 result.tar.gz
07:16:35 (3542377): run_atlas exited; CPU time 47714.803346
07:16:35 (3542377): called boinc_finish(0)

</stderr_txt>
]]>

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