Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:48:42 (230656): wrapper (7.7.26015): starting
08:48:42 (230656): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 08:48:42] Arguments: --nthreads 4
[2026-03-03 08:48:42] Threads: 4
[2026-03-03 08:48:42] Checking for CVMFS
[2026-03-03 08:48:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 08:48:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 08:48:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 08:48:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 08:48:43] 2.9.2.0 3060 1241 80264 156837 1 50 33379511 36864001 0 130560 0 642493 99.982 51052 16667 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 08:48:43] CVMFS is ok
[2026-03-03 08:48:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 08:48:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 08:48:43] Further information can be found at the LHC@home message board.
[2026-03-03 08:48:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 08:48:43] Checking for apptainer binary...
[2026-03-03 08:48:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 08:48:43] Running /usr/bin/apptainer --version
[2026-03-03 08:48:43] apptainer version 1.4.1-1.1
[2026-03-03 08:48:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 08:48:43] thA373a
[2026-03-03 08:48:43] apptainer works
[2026-03-03 08:48:43] Set ATHENA_PROC_NUMBER=4
[2026-03-03 08:48:43] Set ATHENA_CORE_NUMBER=4
[2026-03-03 08:48:43] Starting ATLAS job with PandaID=7036017188
[2026-03-03 08:48:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:52:09]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | job 7036017188 has completed (purged errors)
[2026-03-03 10:52:09] 2026-03-03 09:51:19,446 | INFO     | overall cleanup function is called
[2026-03-03 10:52:09] 2026-03-03 09:51:20,452 | INFO     | --- collectZombieJob: --- 10, [239287]
[2026-03-03 10:52:09] 2026-03-03 09:51:20,453 | INFO     | zombie collector waiting for pid 239287
[2026-03-03 10:52:09] 2026-03-03 09:51:20,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:52:09] 2026-03-03 09:51:20,453 | INFO     | collected zombie processes
[2026-03-03 10:52:09] 2026-03-03 09:51:20,453 | INFO     | will attempt to kill all subprocesses of pid=239287
[2026-03-03 10:52:09] 2026-03-03 09:51:20,494 | INFO     | process IDs to be killed: [239287] (in reverse order)
[2026-03-03 10:52:09] 2026-03-03 09:51:20,526 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:52:09] 2026-03-03 09:51:20,527 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:52:09] 2026-03-03 09:51:20,528 | INFO     | did not find any defunct processes belonging to 239287
[2026-03-03 10:52:09] 2026-03-03 09:51:20,529 | INFO     | did not find any defunct processes belonging to 239287
[2026-03-03 10:52:09] 2026-03-03 09:51:20,529 | INFO     | ready for new job
[2026-03-03 10:52:09] 2026-03-03 09:51:20,529 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:52:09] 2026-03-03 09:51:20,530 | INFO     | **************************************
[2026-03-03 10:52:09] 2026-03-03 09:51:20,530 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:52:09] 2026-03-03 09:51:20,530 | INFO     | **************************************
[2026-03-03 10:52:09] 2026-03-03 09:51:20,530 | INFO     | 
[2026-03-03 10:52:09] 2026-03-03 09:51:20,531 | INFO     | architecture information:
[2026-03-03 10:52:09] 2026-03-03 09:51:20,531 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:52:09] 2026-03-03 09:51:20,545 | INFO     | cat /etc/os-release:
[2026-03-03 10:52:09] NAME="CentOS Linux"
[2026-03-03 10:52:09] VERSION="7 (Core)"
[2026-03-03 10:52:09] ID="centos"
[2026-03-03 10:52:09] ID_LIKE="rhel fedora"
[2026-03-03 10:52:09] VERSION_ID="7"
[2026-03-03 10:52:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:52:09] ANSI_COLOR="0;31"
[2026-03-03 10:52:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:52:09] HOME_URL="https://www.centos.org/"
[2026-03-03 10:52:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:52:09] 
[2026-03-03 10:52:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:52:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:52:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:52:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:52:09] 
[2026-03-03 10:52:09] 2026-03-03 09:51:20,545 | INFO     | **************************************
[2026-03-03 10:52:09] 2026-03-03 09:51:21,048 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-03 10:52:09] 2026-03-03 09:51:21,064 | INFO     | sufficient remaining disk space (325806194688 B)
[2026-03-03 10:52:09] 2026-03-03 09:51:21,064 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:52:09] 2026-03-03 09:51:21,064 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:52:09] 2026-03-03 09:51:21,064 | INFO     | update_server=False
[2026-03-03 10:52:09] 2026-03-03 09:51:21,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:52:09] 2026-03-03 09:51:21,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:52:09] 2026-03-03 09:51:21,064 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:52:09] 2026-03-03 09:51:21,144 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-03 10:52:09] 2026-03-03 09:51:21,145 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-03 10:52:09] 2026-03-03 09:51:21,145 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:52:09] 2026-03-03 09:51:21,145 | INFO     | will abort loop
[2026-03-03 10:52:09] 2026-03-03 09:51:21,784 | INFO     | all job control threads have been joined
[2026-03-03 10:52:09] 2026-03-03 09:51:21,967 | INFO     | all data control threads have been joined
[2026-03-03 10:52:09] 2026-03-03 09:51:21,978 | INFO     | all payload control threads have been joined
[2026-03-03 10:52:09] 2026-03-03 09:51:22,069 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,070 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,150 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,458 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,586 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,790 | INFO     | [job] control thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,794 | INFO     | [job] validate thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,935 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,973 | INFO     | [data] control thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:22,983 | INFO     | [payload] control thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:23,043 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:23,070 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:23,080 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:23,170 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:23,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:52:09] 2026-03-03 09:51:23,554 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:27,221 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:52:09] 2026-03-03 09:51:52,019 | INFO     | PID=234763 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-03 10:52:09] 2026-03-03 09:51:52,019 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:52:09] 2026-03-03 09:51:52,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:52:09] 2026-03-03 09:51:52,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:52:09] 2026-03-03 09:52:03,054 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:52:09] 2026-03-03 09:52:04,343 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139693251606336)>', '<ExcThread(monitor, started 139692376835840)>']
[2026-03-03 10:52:09] 2026-03-03 09:52:05,088 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:52:09] 2026-03-03 09:52:05,088 | INFO     | [monitor] control thread has ended
[2026-03-03 10:52:09] 2026-03-03 09:52:09,369 | INFO     | all workflow threads have been joined
[2026-03-03 10:52:09] 2026-03-03 09:52:09,369 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:52:09] 2026-03-03 09:52:09,369 | INFO     | traces error code: 0
[2026-03-03 10:52:09] 2026-03-03 09:52:09,369 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:52:09] 2026-03-03 09:52:09,448 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:52:09] 2026-03-03 09:52:09,452 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:52:09] 2026-03-03 09:52:09,456 [wrapper] pilotpid: 234763
[2026-03-03 10:52:09] 2026-03-03 09:52:09,460 [wrapper] Pilot exit status: 0
[2026-03-03 10:52:09] 2026-03-03 09:52:09,471 [wrapper] pandaids: 7036017188
[2026-03-03 10:52:09] 2026-03-03 09:52:09,493 [wrapper] cleanup supervisor_pilot  245217 234764
[2026-03-03 10:52:09] 2026-03-03 09:52:09,496 [wrapper] Test setup, not cleaning
[2026-03-03 10:52:09] 2026-03-03 09:52:09,500 [wrapper] apfmon messages muted
[2026-03-03 10:52:09] 2026-03-03 09:52:09,504 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:52:09] 2026-03-03 09:52:09,507 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:52:09]  *** Error codes and diagnostics ***
[2026-03-03 10:52:09]     "exeErrorCode": 0,
[2026-03-03 10:52:09]     "exeErrorDiag": "",
[2026-03-03 10:52:09]     "pilotErrorCode": 0,
[2026-03-03 10:52:09]     "pilotErrorDiag": "",
[2026-03-03 10:52:09]  *** Listing of results directory ***
[2026-03-03 10:52:09] total 462512
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc    584627 Mar  2 15:48 pilot3.tar.gz
[2026-03-03 10:52:09] -rwx------ 1 boinc boinc     36322 Mar  2 16:01 runpilot2-wrapper.sh
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc      5111 Mar  2 16:01 queuedata.json
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc       100 Mar  3 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:52:09] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 08:48 run_atlas
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc       105 Mar  3 08:48 job.xml
[2026-03-03 10:52:09] -rw-r--r-- 2 boinc boinc 254333440 Mar  3 08:48 EVNT.48452880._000001.pool.root.1
[2026-03-03 10:52:09] -rw-r--r-- 2 boinc boinc    597966 Mar  3 08:48 input.tar.gz
[2026-03-03 10:52:09] -rw-r--r-- 2 boinc boinc     15845 Mar  3 08:48 start_atlas.sh
[2026-03-03 10:52:09] drwxrwx--x 2 boinc boinc      4096 Mar  3 08:48 shared
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc         0 Mar  3 08:48 boinc_setup_complete
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc      6377 Mar  3 08:48 init_data.xml
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc         0 Mar  3 08:48 boinc_lockfile
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc      2610 Mar  3 08:48 pandaJob.out
[2026-03-03 10:52:09] -rw------- 1 boinc boinc    998412 Mar  3 08:48 agis_schedconf.cvmfs.json
[2026-03-03 10:52:09] -rw------- 1 boinc boinc   1512931 Mar  3 08:48 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:52:09] -rw------- 1 boinc boinc       422 Mar  3 08:48 workernode_map.json
[2026-03-03 10:52:09] drwx------ 5 boinc boinc      4096 Mar  3 08:48 pilot3
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc       529 Mar  3 10:50 boinc_task_state.xml
[2026-03-03 10:52:09] -rw------- 1 boinc boinc 212636767 Mar  3 10:50 HITS.48847060._000018.pool.root.1
[2026-03-03 10:52:09] -rw------- 1 boinc boinc      1019 Mar  3 10:51 memory_monitor_summary.json
[2026-03-03 10:52:09] -rw------- 1 boinc boinc    309679 Mar  3 10:51 log.48847060._000018.job.log.tgz.1
[2026-03-03 10:52:09] -rw------- 1 boinc boinc      6295 Mar  3 10:51 heartbeat.json
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc      8192 Mar  3 10:51 boinc_mmap_file
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc        27 Mar  3 10:51 wrapper_checkpoint.txt
[2026-03-03 10:52:09] -rw------- 1 boinc boinc        95 Mar  3 10:51 pilot_heartbeat.json
[2026-03-03 10:52:09] -rw------- 1 boinc boinc      4933 Mar  3 10:52 pilotlog.txt
[2026-03-03 10:52:09] -rw------- 1 boinc boinc   1055767 Mar  3 10:52 log.48847060._000018.job.log.1
[2026-03-03 10:52:09] -rw------- 1 boinc boinc       357 Mar  3 10:52 output.list
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc       620 Mar  3 10:52 runtime_log
[2026-03-03 10:52:09] -rw------- 1 boinc boinc   1382400 Mar  3 10:52 result.tar.gz
[2026-03-03 10:52:09] -rw------- 1 boinc boinc       658 Mar  3 10:52 wU7KDmLxJH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKnBLDmYjAm1m.diag
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc      8901 Mar  3 10:52 runtime_log.err
[2026-03-03 10:52:09] -rw-r--r-- 1 boinc boinc     11938 Mar  3 10:52 stderr.txt
[2026-03-03 10:52:09] HITS file was successfully produced:
[2026-03-03 10:52:09] -rw------- 1 boinc boinc 212636767 Mar  3 10:50 shared/HITS.pool.root.1
[2026-03-03 10:52:09]  *** Contents of shared directory: ***
[2026-03-03 10:52:09] total 457984
[2026-03-03 10:52:09] -rw-r--r-- 2 boinc boinc 254333440 Mar  3 08:48 ATLAS.root_0
[2026-03-03 10:52:09] -rw-r--r-- 2 boinc boinc    597966 Mar  3 08:48 input.tar.gz
[2026-03-03 10:52:09] -rw-r--r-- 2 boinc boinc     15845 Mar  3 08:48 start_atlas.sh
[2026-03-03 10:52:09] -rw------- 1 boinc boinc 212636767 Mar  3 10:50 HITS.pool.root.1
[2026-03-03 10:52:09] -rw------- 1 boinc boinc   1382400 Mar  3 10:52 result.tar.gz
10:52:11 (230656): run_atlas exited; CPU time 28177.208126
10:52:11 (230656): called boinc_finish(0)

</stderr_txt>
]]>

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