Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:56:46 (1130812): wrapper (7.7.26015): starting
18:56:46 (1130812): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 18:56:46] Arguments: --nthreads 4
[2026-03-04 18:56:46] Threads: 4
[2026-03-04 18:56:46] Checking for CVMFS
[2026-03-04 18:56:46] No cvmfs_config command found, will try listing directly
[2026-03-04 18:56:46] CVMFS is ok
[2026-03-04 18:56:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 18:56:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 18:56:46] Further information can be found at the LHC@home message board.
[2026-03-04 18:56:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 18:56:46] Checking for apptainer binary...
[2026-03-04 18:56:46] which: no apptainer in ((null))
[2026-03-04 18:56:46] apptainer is not installed, using version from CVMFS
[2026-03-04 18:56:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 18:56:47] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-04 18:56:47] apptainer works
[2026-03-04 18:56:47] Set ATHENA_PROC_NUMBER=4
[2026-03-04 18:56:47] Set ATHENA_CORE_NUMBER=4
[2026-03-04 18:56:47] Starting ATLAS job with PandaID=7036015368
[2026-03-04 18:56:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 22:35:29]  *** The last 200 lines of the pilot log: ***
[2026-03-04 22:35:29] 2026-03-04 21:34:50,442 | INFO     | job 7036015368 has state=finished
[2026-03-04 22:35:29] 2026-03-04 21:34:50,442 | INFO     | preparing for final server update for job 7036015368 in state='finished'
[2026-03-04 22:35:29] 2026-03-04 21:34:50,442 | INFO     | reading metadata from: /var/lib/boinc/var/slot44/slots/2/PanDA_Pilot-7036015368/jobReport.json
[2026-03-04 22:35:29] 2026-03-04 21:34:50,443 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot44/slots/2/workernode_map.json
[2026-03-04 22:35:29] 2026-03-04 21:34:50,444 | INFO     | this job has now completed (state=finished)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,444 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,444 | INFO     | log transfer has been attempted: DONE
[2026-03-04 22:35:29] 2026-03-04 21:34:50,444 | INFO     | job 7036015368 has finished - writing final server update
[2026-03-04 22:35:29] 2026-03-04 21:34:50,444 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_64675/.job.ad'
[2026-03-04 22:35:29] 2026-03-04 21:34:50,444 | INFO     | total number of processed events: 400 (read)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,461 | INFO     | using path: /var/lib/boinc/var/slot44/slots/2/PanDA_Pilot-7036015368/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,461 | INFO     | extracted standard info from prmon json
[2026-03-04 22:35:29] 2026-03-04 21:34:50,461 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 22:35:29] 2026-03-04 21:34:50,461 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 22:35:29] 2026-03-04 21:34:50,462 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 22:35:29] 2026-03-04 21:34:50,462 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 22:35:29] 2026-03-04 21:34:50,464 | INFO     | fitting pss+swap vs Time
[2026-03-04 22:35:29] 2026-03-04 21:34:50,464 | INFO     | sum of square deviations: 2996454322.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,465 | INFO     | sum of deviations: 39644781389.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,465 | INFO     | mean x: 1772653607.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,465 | INFO     | mean y: 2295559.3943661973
[2026-03-04 22:35:29] 2026-03-04 21:34:50,465 | INFO     | intersect: -23450911857.10678
[2026-03-04 22:35:29] 2026-03-04 21:34:50,465 | INFO     | chi2: 3.295387872536056
[2026-03-04 22:35:29] 2026-03-04 21:34:50,465 | INFO     | sum of square deviations: 2790348132.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,466 | INFO     | sum of deviations: 51987180612.5
[2026-03-04 22:35:29] 2026-03-04 21:34:50,466 | INFO     | mean x: 1772653454.5
[2026-03-04 22:35:29] 2026-03-04 21:34:50,466 | INFO     | mean y: 2304501.5625
[2026-03-04 22:35:29] 2026-03-04 21:34:50,466 | INFO     | intersect: -33024131965.492485
[2026-03-04 22:35:29] 2026-03-04 21:34:50,466 | INFO     | chi2: 2.4986181786039507
[2026-03-04 22:35:29] 2026-03-04 21:34:50,466 | INFO     | current chi2=2.4986181786039507 (change=24.17832815895294 %)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,466 | INFO     | right removable region: 207
[2026-03-04 22:35:29] 2026-03-04 21:34:50,466 | INFO     | sum of square deviations: 2790348132.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,467 | INFO     | sum of deviations: -6745640714.000001
[2026-03-04 22:35:29] 2026-03-04 21:34:50,467 | INFO     | mean x: 1772653759.5
[2026-03-04 22:35:29] 2026-03-04 21:34:50,467 | INFO     | mean y: 2329669.8365384615
[2026-03-04 22:35:29] 2026-03-04 21:34:50,467 | INFO     | intersect: 4287703682.7693324
[2026-03-04 22:35:29] 2026-03-04 21:34:50,467 | INFO     | chi2: 0.8382263173249328
[2026-03-04 22:35:29] 2026-03-04 21:34:50,467 | INFO     | current chi2=0.8382263173249328 (change=74.56365229990809 %)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,467 | INFO     | sum of square deviations: 2593916542.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,468 | INFO     | sum of deviations: -6396542960.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,468 | INFO     | mean x: 1772653912.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,468 | INFO     | mean y: 2329377.6551724137
[2026-03-04 22:35:29] 2026-03-04 21:34:50,468 | INFO     | intersect: 4373656179.317575
[2026-03-04 22:35:29] 2026-03-04 21:34:50,468 | INFO     | chi2: 0.8339762034501282
[2026-03-04 22:35:29] 2026-03-04 21:34:50,468 | INFO     | current chi2=0.8339762034501282 (change=0.5070365588577713 %)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,468 | INFO     | left removable region: 20
[2026-03-04 22:35:29] 2026-03-04 21:34:50,468 | INFO     | sum of square deviations: 2027639878.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,469 | INFO     | sum of deviations: 3712273095.9999995
[2026-03-04 22:35:29] 2026-03-04 21:34:50,469 | INFO     | mean x: 1772654034.0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,469 | INFO     | mean y: 2341934.3689839575
[2026-03-04 22:35:29] 2026-03-04 21:34:50,469 | INFO     | intersect: -3243094274.6608667
[2026-03-04 22:35:29] 2026-03-04 21:34:50,469 | INFO     | chi2: 0.0004476819475751203
[2026-03-04 22:35:29] 2026-03-04 21:34:50,469 | INFO     | current memory leak: 1.83 B/s (using 187 data points, chi2=0.00)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | could have reported an average CPU frequency of 3562 MHz (11 samples)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | ..............................
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | . Timing measurements:
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | . get job = 0 s
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | . initial setup = 26 s
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | . payload setup = 30 s
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | . stage-in = 0 s
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | . payload execution = 12960 s
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | . stage-out = 0 s
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | . log creation = 0 s
[2026-03-04 22:35:29] 2026-03-04 21:34:50,470 | INFO     | ..............................
[2026-03-04 22:35:29] 2026-03-04 21:34:50,886 | INFO     | 
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | job summary report
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | --------------------------------------------------
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | PanDA job id: 7036015368
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | task id: 48844933
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | errors: (none)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | pilot state: finished 
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | transexitcode: 0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | exeerrorcode: 0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | exeerrordiag: 
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | exitcode: 0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | exitmsg: OK
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | cpuconsumptiontime: 47489 s
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | nevents: 400
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | neventsw: 0
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | pid: 1142570
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | pgrp: 1142570
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | corecount: 4
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | event service: False
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | sizes: {0: 2294802, 1: 2295931, 12: 2295931, 12993: 2326027, 12995: 2335103, 12996: 2335269}
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | --------------------------------------------------
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | 
[2026-03-04 22:35:29] 2026-03-04 21:34:50,887 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/2
[2026-03-04 22:35:29] 2026-03-04 21:34:50,905 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | job 7036015368 has completed (purged errors)
[2026-03-04 22:35:29] 2026-03-04 21:34:50,906 | INFO     | overall cleanup function is called
[2026-03-04 22:35:29] 2026-03-04 21:34:51,913 | INFO     | --- collectZombieJob: --- 10, [1142570]
[2026-03-04 22:35:29] 2026-03-04 21:34:51,914 | INFO     | zombie collector waiting for pid 1142570
[2026-03-04 22:35:29] 2026-03-04 21:34:51,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 22:35:29] 2026-03-04 21:34:51,914 | INFO     | collected zombie processes
[2026-03-04 22:35:29] 2026-03-04 21:34:51,914 | INFO     | will attempt to kill all subprocesses of pid=1142570
[2026-03-04 22:35:29] 2026-03-04 21:34:52,368 | INFO     | process IDs to be killed: [1142570] (in reverse order)
[2026-03-04 22:35:29] 2026-03-04 21:34:52,583 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 22:35:29] 2026-03-04 21:34:52,583 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 22:35:29] 2026-03-04 21:34:52,609 | INFO     | did not find any defunct processes belonging to 1142570
[2026-03-04 22:35:29] 2026-03-04 21:34:52,631 | INFO     | did not find any defunct processes belonging to 1142570
[2026-03-04 22:35:29] 2026-03-04 21:34:52,632 | INFO     | ready for new job
[2026-03-04 22:35:29] 2026-03-04 21:34:52,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 22:35:29] 2026-03-04 21:34:52,633 | INFO     | **************************************
[2026-03-04 22:35:29] 2026-03-04 21:34:52,633 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 22:35:29] 2026-03-04 21:34:52,633 | INFO     | **************************************
[2026-03-04 22:35:29] 2026-03-04 21:34:52,633 | INFO     | 
[2026-03-04 22:35:29] 2026-03-04 21:34:52,639 | INFO     | architecture information:
[2026-03-04 22:35:29] 2026-03-04 21:34:52,639 | INFO     | executing command: cat /etc/os-release
[2026-03-04 22:35:29] 2026-03-04 21:34:52,652 | INFO     | cat /etc/os-release:
[2026-03-04 22:35:29] NAME="CentOS Linux"
[2026-03-04 22:35:29] VERSION="7 (Core)"
[2026-03-04 22:35:29] ID="centos"
[2026-03-04 22:35:29] ID_LIKE="rhel fedora"
[2026-03-04 22:35:29] VERSION_ID="7"
[2026-03-04 22:35:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 22:35:29] ANSI_COLOR="0;31"
[2026-03-04 22:35:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 22:35:29] HOME_URL="https://www.centos.org/"
[2026-03-04 22:35:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 22:35:29] 
[2026-03-04 22:35:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 22:35:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 22:35:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 22:35:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 22:35:29] 
[2026-03-04 22:35:29] 2026-03-04 21:34:52,652 | INFO     | **************************************
[2026-03-04 22:35:29] 2026-03-04 21:34:53,155 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/2
[2026-03-04 22:35:29] 2026-03-04 21:34:53,167 | INFO     | sufficient remaining disk space (20201865216 B)
[2026-03-04 22:35:29] 2026-03-04 21:34:53,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 22:35:29] 2026-03-04 21:34:53,167 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 22:35:29] 2026-03-04 21:34:53,167 | INFO     | update_server=False
[2026-03-04 22:35:29] 2026-03-04 21:34:53,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 22:35:29] 2026-03-04 21:34:53,169 | INFO     | all job control threads have been joined
[2026-03-04 22:35:29] 2026-03-04 21:34:53,528 | INFO     | all payload control threads have been joined
[2026-03-04 22:35:29] 2026-03-04 21:34:53,852 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 22:35:29] 2026-03-04 21:34:53,853 | INFO     | aborting loop
[2026-03-04 22:35:29] 2026-03-04 21:34:53,971 | INFO     | all data control threads have been joined
[2026-03-04 22:35:29] 2026-03-04 21:34:54,172 | INFO     | [job] retrieve thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:54,175 | INFO     | [job] control thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:54,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 22:35:29] 2026-03-04 21:34:54,533 | INFO     | [payload] control thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:54,539 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:54,559 | INFO     | [payload] failed_post thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:54,857 | INFO     | [job] job monitor thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:54,863 | INFO     | [job] validate thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:54,977 | INFO     | [data] control thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:54,985 | INFO     | [payload] validate_post thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:55,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 22:35:29] 2026-03-04 21:34:55,117 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:55,118 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:55,294 | INFO     | [data] copytool_in thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:55,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 22:35:29] 2026-03-04 21:34:56,485 | INFO     | [data] copytool_out thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:56,532 | INFO     | [job] queue monitor thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:34:59,021 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:35:03,755 | INFO     | job.realtimelogging is not enabled
[2026-03-04 22:35:29] 2026-03-04 21:35:04,760 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 22:35:29] 2026-03-04 21:35:23,516 | INFO     | PID=1135919 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 22:35:29] 2026-03-04 21:35:23,516 | INFO     | .. there are 52 such processes running
[2026-03-04 22:35:29] 2026-03-04 21:35:23,516 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 22:35:29] 2026-03-04 21:35:23,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 22:35:29] 2026-03-04 21:35:23,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 22:35:29] 2026-03-04 21:35:24,058 | INFO     | [monitor] cgroup control has ended
[2026-03-04 22:35:29] 2026-03-04 21:35:24,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22826819913536)>', '<ExcThread(monitor, started 22826580190976)>']
[2026-03-04 22:35:29] 2026-03-04 21:35:24,520 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 22:35:29] 2026-03-04 21:35:24,521 | INFO     | [monitor] control thread has ended
[2026-03-04 22:35:29] 2026-03-04 21:35:29,335 | INFO     | all workflow threads have been joined
[2026-03-04 22:35:29] 2026-03-04 21:35:29,336 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 22:35:29] 2026-03-04 21:35:29,336 | INFO     | traces error code: 0
[2026-03-04 22:35:29] 2026-03-04 21:35:29,336 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 22:35:29] 2026-03-04 21:35:29,457 [wrapper] ==== pilot stdout END ====
[2026-03-04 22:35:29] 2026-03-04 21:35:29,459 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 22:35:29] 2026-03-04 21:35:29,461 [wrapper] pilotpid: 1135919
[2026-03-04 22:35:29] 2026-03-04 21:35:29,463 [wrapper] Pilot exit status: 0
[2026-03-04 22:35:29] 2026-03-04 21:35:29,473 [wrapper] pandaids: 7036015368
[2026-03-04 22:35:29] 2026-03-04 21:35:29,592 [wrapper] cleanup supervisor_pilot 3097009 1135920
[2026-03-04 22:35:29] 2026-03-04 21:35:29,595 [wrapper] Test setup, not cleaning
[2026-03-04 22:35:29] 2026-03-04 21:35:29,598 [wrapper] apfmon messages muted
[2026-03-04 22:35:29] 2026-03-04 21:35:29,600 [wrapper] ==== wrapper stdout END ====
[2026-03-04 22:35:29] 2026-03-04 21:35:29,602 [wrapper] ==== wrapper stderr END ====
[2026-03-04 22:35:29]  *** Error codes and diagnostics ***
[2026-03-04 22:35:29]     "exeErrorCode": 0,
[2026-03-04 22:35:29]     "exeErrorDiag": "",
[2026-03-04 22:35:29]     "pilotErrorCode": 0,
[2026-03-04 22:35:29]     "pilotErrorDiag": "",
[2026-03-04 22:35:29]  *** Listing of results directory ***
[2026-03-04 22:35:29] total 472048
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc    584627 Mar  2 15:48 pilot3.tar.gz
[2026-03-04 22:35:29] -rwx------. 1 boinc boinc     36322 Mar  2 15:51 runpilot2-wrapper.sh
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc      5111 Mar  2 15:52 queuedata.json
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc       100 Mar  4 18:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 22:35:29] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 18:56 run_atlas
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc       105 Mar  4 18:56 job.xml
[2026-03-04 22:35:29] -rw-r--r--. 2 boinc boinc 232454815 Mar  4 18:56 EVNT.48454686._000003.pool.root.1
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc      6698 Mar  4 18:56 init_data.xml
[2026-03-04 22:35:29] -rw-r--r--. 2 boinc boinc     15845 Mar  4 18:56 start_atlas.sh
[2026-03-04 22:35:29] drwxrwx--x. 2 boinc boinc      4096 Mar  4 18:56 shared
[2026-03-04 22:35:29] -rw-r--r--. 2 boinc boinc    597962 Mar  4 18:56 input.tar.gz
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc         0 Mar  4 18:56 boinc_lockfile
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc      2624 Mar  4 18:56 pandaJob.out
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc    997757 Mar  4 18:57 agis_schedconf.cvmfs.json
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc       444 Mar  4 18:58 workernode_map.json
[2026-03-04 22:35:29] drwx------. 5 boinc boinc      4096 Mar  4 18:58 pilot3
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc 242552221 Mar  4 22:34 HITS.48844933._000073.pool.root.1
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc       531 Mar  4 22:34 boinc_task_state.xml
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc      1032 Mar  4 22:34 memory_monitor_summary.json
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc   1521291 Mar  4 22:34 agis_ddmendpoints.agis.ALL.json
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc    401615 Mar  4 22:34 log.48844933._000073.job.log.tgz.1
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc        95 Mar  4 22:34 pilot_heartbeat.json
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc      6350 Mar  4 22:34 heartbeat.json
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc      4901 Mar  4 22:35 pilotlog.txt
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc   1815302 Mar  4 22:35 log.48844933._000073.job.log.1
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc      8192 Mar  4 22:35 boinc_mmap_file
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc       357 Mar  4 22:35 output.list
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc       620 Mar  4 22:35 runtime_log
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc   2232320 Mar  4 22:35 result.tar.gz
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc      9205 Mar  4 22:35 runtime_log.err
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc       665 Mar  4 22:35 qlTNDmgnJH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQlDLDmGsqSOm.diag
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc        28 Mar  4 22:35 wrapper_checkpoint.txt
[2026-03-04 22:35:29] -rw-r--r--. 1 boinc boinc     21081 Mar  4 22:35 stderr.txt
[2026-03-04 22:35:29] HITS file was successfully produced:
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc 242552221 Mar  4 22:34 shared/HITS.pool.root.1
[2026-03-04 22:35:29]  *** Contents of shared directory: ***
[2026-03-04 22:35:29] total 466664
[2026-03-04 22:35:29] -rw-r--r--. 2 boinc boinc 232454815 Mar  4 18:56 ATLAS.root_0
[2026-03-04 22:35:29] -rw-r--r--. 2 boinc boinc     15845 Mar  4 18:56 start_atlas.sh
[2026-03-04 22:35:29] -rw-r--r--. 2 boinc boinc    597962 Mar  4 18:56 input.tar.gz
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc 242552221 Mar  4 22:34 HITS.pool.root.1
[2026-03-04 22:35:29] -rw-------. 1 boinc boinc   2232320 Mar  4 22:35 result.tar.gz
22:35:31 (1130812): run_atlas exited; CPU time 48089.330774
22:35:31 (1130812): called boinc_finish(0)

</stderr_txt>
]]>

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