Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:48:29 (902394): wrapper (7.7.26015): starting
18:48:29 (902394): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 18:48:29] Arguments: --nthreads 4
[2026-03-04 18:48:29] Threads: 4
[2026-03-04 18:48:29] Checking for CVMFS
[2026-03-04 18:48:29] No cvmfs_config command found, will try listing directly
[2026-03-04 18:48:29] CVMFS is ok
[2026-03-04 18:48:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 18:48:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 18:48:29] Further information can be found at the LHC@home message board.
[2026-03-04 18:48:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 18:48:29] Checking for apptainer binary...
[2026-03-04 18:48:29] which: no apptainer in ((null))
[2026-03-04 18:48:29] apptainer is not installed, using version from CVMFS
[2026-03-04 18:48:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 18:48:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-04 18:48:31] apptainer works
[2026-03-04 18:48:31] Set ATHENA_PROC_NUMBER=4
[2026-03-04 18:48:31] Set ATHENA_CORE_NUMBER=4
[2026-03-04 18:48:31] Starting ATLAS job with PandaID=7037133103
[2026-03-04 18:48:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 20:26:15]  *** The last 200 lines of the pilot log: ***
[2026-03-04 20:26:15] 2026-03-04 19:25:08,338 | INFO     | transferring file log.48936031._000020.job.log.tgz.1 from /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103/log.48936031._000020.job.log.tgz.1 to /var/lib/b
[2026-03-04 20:26:15] 2026-03-04 19:25:08,338 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103/log.48936031._000020.job.log.tgz.1 /var/lib/boinc/var/slot24/slots/1/lo
[2026-03-04 20:26:15] 2026-03-04 19:25:08,362 | INFO     | adding to output.list: log.48936031._000020.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/e8/log.48936031._000020.job.log.tg
[2026-03-04 20:26:15] 2026-03-04 19:25:08,363 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-04 20:26:15] 2026-03-04 19:25:08,363 | INFO     | summary of transferred files:
[2026-03-04 20:26:15] 2026-03-04 19:25:08,363 | INFO     |  -- lfn=log.48936031._000020.job.log.tgz.1, status_code=0, status=transferred
[2026-03-04 20:26:15] 2026-03-04 19:25:08,363 | INFO     | stage-out finished correctly
[2026-03-04 20:26:15] 2026-03-04 19:25:09,730 | INFO     | time since job start (5709s) is within the limit (349056.0s)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,204 | WARNING  | process 926798 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 20:26:15] 2026-03-04 19:25:10,205 | INFO     | using path: /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,206 | INFO     | using path: /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,206 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-04 20:26:15] 2026-03-04 19:25:10,206 | WARNING  | maxPSS not found in memory monitor output
[2026-03-04 20:26:15] 2026-03-04 19:25:10,206 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2674826 B
[2026-03-04 20:26:15] 2026-03-04 19:25:10,206 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15833 B
[2026-03-04 20:26:15] 2026-03-04 19:25:10,207 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/1
[2026-03-04 20:26:15] 2026-03-04 19:25:10,233 | INFO     | sufficient remaining disk space (19685965824 B)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,233 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,233 | INFO     | size of work directory /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103: 2979651 B (within 5033164800 B limit)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,234 | INFO     | pfn file=/var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103/HITS.48936031._000020.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,234 | INFO     | total size of present files: 0 B (workdir size: 2979651 B)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,234 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103/HITS.48936031._000020.pool.root.1 since it does not exist
[2026-03-04 20:26:15] 2026-03-04 19:25:10,320 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-04 20:26:15] 2026-03-04 19:25:10,404 | INFO     | job 7037133103 has state=finished
[2026-03-04 20:26:15] 2026-03-04 19:25:10,404 | INFO     | preparing for final server update for job 7037133103 in state='finished'
[2026-03-04 20:26:15] 2026-03-04 19:25:10,404 | INFO     | reading metadata from: /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103/jobReport.json
[2026-03-04 20:26:15] 2026-03-04 19:25:10,406 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot24/slots/1/workernode_map.json
[2026-03-04 20:26:15] 2026-03-04 19:25:10,407 | INFO     | this job has now completed (state=finished)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,407 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,407 | INFO     | log transfer has been attempted: DONE
[2026-03-04 20:26:15] 2026-03-04 19:25:10,407 | INFO     | job 7037133103 has finished - writing final server update
[2026-03-04 20:26:15] 2026-03-04 19:25:10,407 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_617386/.job.ad'
[2026-03-04 20:26:15] 2026-03-04 19:25:10,407 | INFO     | total number of processed events: 400 (read)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,426 | INFO     | using path: /var/lib/boinc/var/slot24/slots/1/PanDA_Pilot-7037133103/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,426 | INFO     | extracted standard info from prmon json
[2026-03-04 20:26:15] 2026-03-04 19:25:10,426 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 20:26:15] 2026-03-04 19:25:10,426 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 20:26:15] 2026-03-04 19:25:10,426 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 20:26:15] 2026-03-04 19:25:10,426 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 20:26:15] 2026-03-04 19:25:10,427 | INFO     | fitting pss+swap vs Time
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | sum of square deviations: 197203697.5
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | sum of deviations: 1564679462.999998
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | mean x: 1772649555.5
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | mean y: 2339745.7906976743
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | intersect: -14062449047.466717
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | chi2: 0.004214611848782489
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | current memory leak: 7.93 B/s (using 86 data points, chi2=0.00)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | could have reported an average CPU frequency of 3564 MHz (7 samples)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | ..............................
[2026-03-04 20:26:15] 2026-03-04 19:25:10,428 | INFO     | . Timing measurements:
[2026-03-04 20:26:15] 2026-03-04 19:25:10,429 | INFO     | . get job = 0 s
[2026-03-04 20:26:15] 2026-03-04 19:25:10,429 | INFO     | . initial setup = 23 s
[2026-03-04 20:26:15] 2026-03-04 19:25:10,429 | INFO     | . payload setup = 27 s
[2026-03-04 20:26:15] 2026-03-04 19:25:10,429 | INFO     | . stage-in = 0 s
[2026-03-04 20:26:15] 2026-03-04 19:25:10,429 | INFO     | . payload execution = 5664 s
[2026-03-04 20:26:15] 2026-03-04 19:25:10,429 | INFO     | . stage-out = 0 s
[2026-03-04 20:26:15] 2026-03-04 19:25:10,429 | INFO     | . log creation = 0 s
[2026-03-04 20:26:15] 2026-03-04 19:25:10,429 | INFO     | ..............................
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | 
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | job summary report
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | --------------------------------------------------
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | PanDA job id: 7037133103
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | task id: 48936031
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | errors: (none)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | pilot state: finished 
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | transexitcode: 0
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | exeerrorcode: 0
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | exeerrordiag: 
[2026-03-04 20:26:15] 2026-03-04 19:25:10,519 | INFO     | exitcode: 0
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | exitmsg: OK
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | cpuconsumptiontime: 18963 s
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | nevents: 400
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | neventsw: 0
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | pid: 926798
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | pgrp: 926798
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | corecount: 4
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | event service: False
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | sizes: {0: 2295308, 1: 2295825, 12: 2295825, 5695: 2322535, 5696: 2331555, 5698: 2331961}
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | --------------------------------------------------
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | 
[2026-03-04 20:26:15] 2026-03-04 19:25:10,520 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/1
[2026-03-04 20:26:15] 2026-03-04 19:25:10,576 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | job 7037133103 has completed (purged errors)
[2026-03-04 20:26:15] 2026-03-04 19:25:10,577 | INFO     | overall cleanup function is called
[2026-03-04 20:26:15] 2026-03-04 19:25:11,013 | INFO     | number of running child processes to parent process 926798: 1
[2026-03-04 20:26:15] 2026-03-04 19:25:11,013 | INFO     | maximum number of monitored processes: 6
[2026-03-04 20:26:15] 2026-03-04 19:25:11,013 | INFO     | aborting job monitoring since job object (job id=7037133103) has expired
[2026-03-04 20:26:15] 2026-03-04 19:25:11,587 | INFO     | --- collectZombieJob: --- 10, [926798]
[2026-03-04 20:26:15] 2026-03-04 19:25:11,587 | INFO     | zombie collector waiting for pid 926798
[2026-03-04 20:26:15] 2026-03-04 19:25:11,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 20:26:15] 2026-03-04 19:25:11,594 | INFO     | collected zombie processes
[2026-03-04 20:26:15] 2026-03-04 19:25:11,594 | INFO     | will attempt to kill all subprocesses of pid=926798
[2026-03-04 20:26:15] 2026-03-04 19:25:12,208 | INFO     | process IDs to be killed: [926798] (in reverse order)
[2026-03-04 20:26:15] 2026-03-04 19:25:12,618 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 20:26:15] 2026-03-04 19:25:12,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 20:26:15] 2026-03-04 19:25:12,654 | INFO     | did not find any defunct processes belonging to 926798
[2026-03-04 20:26:15] 2026-03-04 19:25:12,689 | INFO     | did not find any defunct processes belonging to 926798
[2026-03-04 20:26:15] 2026-03-04 19:25:12,689 | INFO     | ready for new job
[2026-03-04 20:26:15] 2026-03-04 19:25:12,689 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 20:26:15] 2026-03-04 19:25:12,690 | INFO     | **************************************
[2026-03-04 20:26:15] 2026-03-04 19:25:12,691 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 20:26:15] 2026-03-04 19:25:12,691 | INFO     | **************************************
[2026-03-04 20:26:15] 2026-03-04 19:25:12,691 | INFO     | 
[2026-03-04 20:26:15] 2026-03-04 19:25:12,705 | INFO     | architecture information:
[2026-03-04 20:26:15] 2026-03-04 19:25:12,705 | INFO     | executing command: cat /etc/os-release
[2026-03-04 20:26:15] 2026-03-04 19:25:12,763 | INFO     | cat /etc/os-release:
[2026-03-04 20:26:15] NAME="CentOS Linux"
[2026-03-04 20:26:15] VERSION="7 (Core)"
[2026-03-04 20:26:15] ID="centos"
[2026-03-04 20:26:15] ID_LIKE="rhel fedora"
[2026-03-04 20:26:15] VERSION_ID="7"
[2026-03-04 20:26:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 20:26:15] ANSI_COLOR="0;31"
[2026-03-04 20:26:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 20:26:15] HOME_URL="https://www.centos.org/"
[2026-03-04 20:26:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 20:26:15] 
[2026-03-04 20:26:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 20:26:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 20:26:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 20:26:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 20:26:15] 
[2026-03-04 20:26:15] 2026-03-04 19:25:12,764 | INFO     | **************************************
[2026-03-04 20:26:15] 2026-03-04 19:25:13,268 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/1
[2026-03-04 20:26:15] 2026-03-04 19:25:13,288 | INFO     | sufficient remaining disk space (19906166784 B)
[2026-03-04 20:26:15] 2026-03-04 19:25:13,289 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 20:26:15] 2026-03-04 19:25:13,290 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 20:26:15] 2026-03-04 19:25:13,290 | INFO     | update_server=False
[2026-03-04 20:26:15] 2026-03-04 19:25:13,290 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 20:26:15] 2026-03-04 19:25:13,518 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-04 20:26:15] 2026-03-04 19:25:13,518 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-04 20:26:15] 2026-03-04 19:25:13,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 20:26:15] 2026-03-04 19:25:13,518 | INFO     | will abort loop
[2026-03-04 20:26:15] 2026-03-04 19:25:13,696 | INFO     | all payload control threads have been joined
[2026-03-04 20:26:15] 2026-03-04 19:25:13,797 | INFO     | all data control threads have been joined
[2026-03-04 20:26:15] 2026-03-04 19:25:13,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 20:26:15] 2026-03-04 19:25:14,296 | INFO     | [job] retrieve thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:14,319 | INFO     | [payload] failed_post thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:14,415 | INFO     | [data] copytool_in thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:14,524 | INFO     | [job] job monitor thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:14,703 | INFO     | [payload] control thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:14,803 | INFO     | [data] control thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:14,910 | INFO     | [job] validate thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:14,939 | INFO     | all job control threads have been joined
[2026-03-04 20:26:15] 2026-03-04 19:25:15,035 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:15,145 | INFO     | [payload] validate_post thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:15,533 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 20:26:15] 2026-03-04 19:25:15,608 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:15,675 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:15,945 | INFO     | [job] control thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:15,966 | INFO     | [data] copytool_out thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:16,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 20:26:15] 2026-03-04 19:25:16,543 | INFO     | [job] queue monitor thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:20,421 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:23,894 | INFO     | job.realtimelogging is not enabled
[2026-03-04 20:26:15] 2026-03-04 19:25:24,900 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 20:26:15] 2026-03-04 19:25:41,755 | INFO     | 5735s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-04 20:26:15] 2026-03-04 19:25:43,518 | INFO     | PID=920093 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-04 20:26:15] 2026-03-04 19:25:43,518 | INFO     | .. there are 57 such processes running
[2026-03-04 20:26:15] 2026-03-04 19:25:43,519 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 20:26:15] 2026-03-04 19:25:43,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 20:26:15] 2026-03-04 19:25:43,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 20:26:15] 2026-03-04 19:26:09,639 | INFO     | [monitor] cgroup control has ended
[2026-03-04 20:26:15] 2026-03-04 19:26:10,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23342713632576)>', '<ExcThread(monitor, started 23342390142720)>']
[2026-03-04 20:26:15] 2026-03-04 19:26:10,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 20:26:15] 2026-03-04 19:26:10,673 | INFO     | [monitor] control thread has ended
[2026-03-04 20:26:15] 2026-03-04 19:26:15,163 | INFO     | all workflow threads have been joined
[2026-03-04 20:26:15] 2026-03-04 19:26:15,163 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 20:26:15] 2026-03-04 19:26:15,164 | INFO     | traces error code: 0
[2026-03-04 20:26:15] 2026-03-04 19:26:15,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 20:26:15] 2026-03-04 19:26:15,295 [wrapper] ==== pilot stdout END ====
[2026-03-04 20:26:15] 2026-03-04 19:26:15,298 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 20:26:15] 2026-03-04 19:26:15,300 [wrapper] pilotpid: 920093
[2026-03-04 20:26:15] 2026-03-04 19:26:15,302 [wrapper] Pilot exit status: 0
[2026-03-04 20:26:15] 2026-03-04 19:26:15,320 [wrapper] pandaids: 7037133103
[2026-03-04 20:26:15] 2026-03-04 19:26:15,437 [wrapper] cleanup supervisor_pilot 1588929 920094
[2026-03-04 20:26:15] 2026-03-04 19:26:15,444 [wrapper] Test setup, not cleaning
[2026-03-04 20:26:15] 2026-03-04 19:26:15,446 [wrapper] apfmon messages muted
[2026-03-04 20:26:15] 2026-03-04 19:26:15,448 [wrapper] ==== wrapper stdout END ====
[2026-03-04 20:26:15] 2026-03-04 19:26:15,450 [wrapper] ==== wrapper stderr END ====
[2026-03-04 20:26:15]  *** Error codes and diagnostics ***
[2026-03-04 20:26:15]     "exeErrorCode": 0,
[2026-03-04 20:26:15]     "exeErrorDiag": "",
[2026-03-04 20:26:15]     "pilotErrorCode": 0,
[2026-03-04 20:26:15]     "pilotErrorDiag": "",
[2026-03-04 20:26:15]  *** Listing of results directory ***
[2026-03-04 20:26:15] total 432484
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc    584627 Mar  2 15:48 pilot3.tar.gz
[2026-03-04 20:26:15] -rwx------. 1 boinc boinc     36322 Mar  2 15:51 runpilot2-wrapper.sh
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc      5111 Mar  2 15:52 queuedata.json
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc       100 Mar  4 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 20:26:15] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 18:48 run_atlas
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc       105 Mar  4 18:48 job.xml
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc      6699 Mar  4 18:48 init_data.xml
[2026-03-04 20:26:15] -rw-r--r--. 2 boinc boinc 259369895 Mar  4 18:48 EVNT.48564574._000001.pool.root.1
[2026-03-04 20:26:15] -rw-r--r--. 2 boinc boinc     15845 Mar  4 18:48 start_atlas.sh
[2026-03-04 20:26:15] drwxrwx--x. 2 boinc boinc      4096 Mar  4 18:48 shared
[2026-03-04 20:26:15] -rw-r--r--. 2 boinc boinc    597946 Mar  4 18:48 input.tar.gz
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc         0 Mar  4 18:48 boinc_lockfile
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc      2559 Mar  4 18:48 pandaJob.out
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc    997352 Mar  4 18:49 agis_schedconf.cvmfs.json
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc   1521291 Mar  4 18:49 agis_ddmendpoints.agis.ALL.json
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc       444 Mar  4 18:49 workernode_map.json
[2026-03-04 20:26:15] drwx------. 5 boinc boinc      4096 Mar  4 18:50 pilot3
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc 177360162 Mar  4 20:24 HITS.48936031._000020.pool.root.1
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc       530 Mar  4 20:24 boinc_task_state.xml
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc      1029 Mar  4 20:25 memory_monitor_summary.json
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc    288118 Mar  4 20:25 log.48936031._000020.job.log.tgz.1
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc      6345 Mar  4 20:25 heartbeat.json
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc        95 Mar  4 20:25 pilot_heartbeat.json
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc      8192 Mar  4 20:25 boinc_mmap_file
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc        27 Mar  4 20:25 wrapper_checkpoint.txt
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc      5201 Mar  4 20:26 pilotlog.txt
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc    810432 Mar  4 20:26 log.48936031._000020.job.log.1
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc       357 Mar  4 20:26 output.list
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc       620 Mar  4 20:26 runtime_log
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc   1116160 Mar  4 20:26 result.tar.gz
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc      9204 Mar  4 20:26 runtime_log.err
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc       662 Mar  4 20:26 r7lMDmYnJH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkkDLDmMU8ken.diag
[2026-03-04 20:26:15] -rw-r--r--. 1 boinc boinc     22670 Mar  4 20:26 stderr.txt
[2026-03-04 20:26:15] HITS file was successfully produced:
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc 177360162 Mar  4 20:24 shared/HITS.pool.root.1
[2026-03-04 20:26:15]  *** Contents of shared directory: ***
[2026-03-04 20:26:15] total 428196
[2026-03-04 20:26:15] -rw-r--r--. 2 boinc boinc 259369895 Mar  4 18:48 ATLAS.root_0
[2026-03-04 20:26:15] -rw-r--r--. 2 boinc boinc     15845 Mar  4 18:48 start_atlas.sh
[2026-03-04 20:26:15] -rw-r--r--. 2 boinc boinc    597946 Mar  4 18:48 input.tar.gz
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc 177360162 Mar  4 20:24 HITS.pool.root.1
[2026-03-04 20:26:15] -rw-------. 1 boinc boinc   1116160 Mar  4 20:26 result.tar.gz
20:26:16 (902394): run_atlas exited; CPU time 19199.455828
20:26:16 (902394): called boinc_finish(0)

</stderr_txt>
]]>

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