Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:49:27 (3963): wrapper (7.7.26015): starting
20:49:27 (3963): wrapper: running run_atlas (--nthreads 8)
[2026-03-02 20:49:27] Arguments: --nthreads 8
[2026-03-02 20:49:27] Threads: 8
[2026-03-02 20:49:27] Checking for CVMFS
[2026-03-02 20:49:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 20:49:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 20:49:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 20:49:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 20:49:27] 2.11.0.0 4053 204193 95048 156818 0 1 2397136 4096001 0 130560 3 11911619 99.482 13650059 477 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-02 20:49:27] CVMFS is ok
[2026-03-02 20:49:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 20:49:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 20:49:27] Further information can be found at the LHC@home message board.
[2026-03-02 20:49:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 20:49:27] Checking for apptainer binary...
[2026-03-02 20:49:27] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-02 20:49:27] apptainer is not installed, using version from CVMFS
[2026-03-02 20:49:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 20:49:28] WARNING: Environment variable TMPDIR already has value [/tmp/job_11245262/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node309
[2026-03-02 20:49:28] apptainer works
[2026-03-02 20:49:28] Set ATHENA_PROC_NUMBER=8
[2026-03-02 20:49:28] Set ATHENA_CORE_NUMBER=8
[2026-03-02 20:49:28] Starting ATLAS job with PandaID=7036015299
[2026-03-02 20:49:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11245262/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 22:43:57]  *** The last 200 lines of the pilot log: ***
[2026-03-02 22:43:57] 2026-03-02 21:43:07,280 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 22:43:57] 2026-03-02 21:43:07,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 22:43:57] 2026-03-02 21:43:07,280 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 22:43:57] 2026-03-02 21:43:07,280 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 22:43:57] 2026-03-02 21:43:07,281 | INFO     | fitting pss+swap vs Time
[2026-03-02 22:43:57] 2026-03-02 21:43:07,281 | INFO     | sum of square deviations: 435610028.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,281 | INFO     | sum of deviations: -8186262464.000001
[2026-03-02 22:43:57] 2026-03-02 21:43:07,281 | INFO     | mean x: 1772484382.5
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | mean y: 2535998.6428571427
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | intersect: 33312197016.102192
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | chi2: 1.8535206384737108
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | sum of square deviations: 379832238.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | sum of deviations: -978145614.0000004
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | mean x: 1772484230.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | mean y: 2555010.551401869
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | intersect: 4567064027.973636
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | chi2: 1.1789782074141133
[2026-03-02 22:43:57] 2026-03-02 21:43:07,282 | INFO     | current chi2=1.1789782074141133 (change=36.39249636923667 %)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | sum of square deviations: 329031285.5
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | sum of deviations: -958518985.9999989
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | mean x: 1772484077.5
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | mean y: 2555069.5098039214
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | intersect: 5166075122.275253
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | chi2: 1.1783095325340678
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | current chi2=1.1783095325340678 (change=0.056716474981513054 %)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | right removable region: 101
[2026-03-02 22:43:57] 2026-03-02 21:43:07,283 | INFO     | sum of square deviations: 379832238.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | sum of deviations: -17662503152.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | mean x: 1772484535.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | mean y: 2560986.5327102803
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | intersect: 82424510874.60081
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | chi2: 0.8079374131963419
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | current chi2=0.8079374131963419 (change=56.41065999342519 %)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | sum of square deviations: 329031285.5
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | sum of deviations: -11579681301.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | mean x: 1772484687.5
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | mean y: 2542683.0196078434
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | intersect: 62382044866.11088
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | chi2: 0.7512800238052137
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | current chi2=0.7512800238052137 (change=7.012596330572393 %)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,284 | INFO     | left removable region: 20
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | sum of square deviations: 164765880.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | sum of deviations: -451908008.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | mean x: 1772484657.0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | mean y: 2546261.185185185
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | intersect: 4863989726.030172
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | chi2: 0.009168223843139943
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | current memory leak: -2.74 B/s (using 81 data points, chi2=0.01)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | could have reported an average CPU frequency of 2364 MHz (7 samples)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | ..............................
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | . Timing measurements:
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | . get job = 0 s
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | . initial setup = 2 s
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | . payload setup = 2 s
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | . stage-in = 0 s
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | . payload execution = 6788 s
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | . stage-out = 0 s
[2026-03-02 22:43:57] 2026-03-02 21:43:07,285 | INFO     | . log creation = 0 s
[2026-03-02 22:43:57] 2026-03-02 21:43:07,286 | INFO     | ..............................
[2026-03-02 22:43:57] 2026-03-02 21:43:07,352 | INFO     | 
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | job summary report
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | --------------------------------------------------
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | PanDA job id: 7036015299
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | task id: 48844933
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | errors: (none)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | pilot state: finished 
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | transexitcode: 0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | exeerrorcode: 0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | exeerrordiag: 
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | exitcode: 0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | exitmsg: OK
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | cpuconsumptiontime: 49601 s
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | nevents: 400
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | neventsw: 0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | pid: 14692
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | pgrp: 14692
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | corecount: 8
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | event service: False
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | sizes: {0: 2282476, 11: 2282476, 6791: 2309846, 6792: 2318874, 6793: 2318930, 6795: 2319124}
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | --------------------------------------------------
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | 
[2026-03-02 22:43:57] 2026-03-02 21:43:07,353 | INFO     | executing command: ls -lF /tmp/job_11245262/atlas/pilot/slots/0
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 22:43:57] 2026-03-02 21:43:07,362 | INFO     | job 7036015299 has completed (purged errors)
[2026-03-02 22:43:57] 2026-03-02 21:43:07,363 | INFO     | overall cleanup function is called
[2026-03-02 22:43:57] 2026-03-02 21:43:08,368 | INFO     | --- collectZombieJob: --- 10, [14692]
[2026-03-02 22:43:57] 2026-03-02 21:43:08,368 | INFO     | zombie collector waiting for pid 14692
[2026-03-02 22:43:57] 2026-03-02 21:43:08,368 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 22:43:57] 2026-03-02 21:43:08,369 | INFO     | collected zombie processes
[2026-03-02 22:43:57] 2026-03-02 21:43:08,369 | INFO     | will attempt to kill all subprocesses of pid=14692
[2026-03-02 22:43:57] 2026-03-02 21:43:08,473 | INFO     | process IDs to be killed: [14692] (in reverse order)
[2026-03-02 22:43:57] 2026-03-02 21:43:08,510 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 22:43:57] 2026-03-02 21:43:08,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 22:43:57] 2026-03-02 21:43:08,514 | INFO     | did not find any defunct processes belonging to 14692
[2026-03-02 22:43:57] 2026-03-02 21:43:08,517 | INFO     | did not find any defunct processes belonging to 14692
[2026-03-02 22:43:57] 2026-03-02 21:43:08,517 | INFO     | ready for new job
[2026-03-02 22:43:57] 2026-03-02 21:43:08,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 22:43:57] 2026-03-02 21:43:08,518 | INFO     | **************************************
[2026-03-02 22:43:57] 2026-03-02 21:43:08,518 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 22:43:57] 2026-03-02 21:43:08,518 | INFO     | **************************************
[2026-03-02 22:43:57] 2026-03-02 21:43:08,518 | INFO     | 
[2026-03-02 22:43:57] 2026-03-02 21:43:08,531 | INFO     | architecture information:
[2026-03-02 22:43:57] 2026-03-02 21:43:08,531 | INFO     | executing command: cat /etc/os-release
[2026-03-02 22:43:57] 2026-03-02 21:43:08,537 | INFO     | cat /etc/os-release:
[2026-03-02 22:43:57] NAME="CentOS Linux"
[2026-03-02 22:43:57] VERSION="7 (Core)"
[2026-03-02 22:43:57] ID="centos"
[2026-03-02 22:43:57] ID_LIKE="rhel fedora"
[2026-03-02 22:43:57] VERSION_ID="7"
[2026-03-02 22:43:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 22:43:57] ANSI_COLOR="0;31"
[2026-03-02 22:43:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 22:43:57] HOME_URL="https://www.centos.org/"
[2026-03-02 22:43:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 22:43:57] 
[2026-03-02 22:43:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 22:43:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 22:43:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 22:43:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 22:43:57] 
[2026-03-02 22:43:57] 2026-03-02 21:43:08,537 | INFO     | **************************************
[2026-03-02 22:43:57] 2026-03-02 21:43:09,040 | INFO     | executing command: df -mP /tmp/job_11245262/atlas/pilot/slots/0
[2026-03-02 22:43:57] 2026-03-02 21:43:09,045 | INFO     | sufficient remaining disk space (225371488256 B)
[2026-03-02 22:43:57] 2026-03-02 21:43:09,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 22:43:57] 2026-03-02 21:43:09,045 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 22:43:57] 2026-03-02 21:43:09,045 | INFO     | update_server=False
[2026-03-02 22:43:57] 2026-03-02 21:43:09,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 22:43:57] 2026-03-02 21:43:09,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 22:43:57] 2026-03-02 21:43:09,216 | INFO     | job.realtimelogging is not enabled
[2026-03-02 22:43:57] 2026-03-02 21:43:09,274 | INFO     | all data control threads have been joined
[2026-03-02 22:43:57] 2026-03-02 21:43:09,439 | INFO     | all job control threads have been joined
[2026-03-02 22:43:57] 2026-03-02 21:43:09,531 | WARNING  | process 14692 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 22:43:57] 2026-03-02 21:43:09,612 | INFO     | using path: /tmp/job_11245262/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 22:43:57] 2026-03-02 21:43:09,710 | INFO     | number of running child processes to parent process 14692: 1
[2026-03-02 22:43:57] 2026-03-02 21:43:09,710 | INFO     | maximum number of monitored processes: 6
[2026-03-02 22:43:57] 2026-03-02 21:43:09,710 | INFO     | aborting job monitoring since job object (job id=7036015299) has expired
[2026-03-02 22:43:57] 2026-03-02 21:43:09,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 22:43:57] 2026-03-02 21:43:09,710 | INFO     | will abort loop
[2026-03-02 22:43:57] 2026-03-02 21:43:10,051 | INFO     | [job] retrieve thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,051 | INFO     | [job] queue monitor thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,059 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 22:43:57] 2026-03-02 21:43:10,136 | INFO     | all payload control threads have been joined
[2026-03-02 22:43:57] 2026-03-02 21:43:10,167 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,168 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,221 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,241 | INFO     | [job] validate thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,280 | INFO     | [data] control thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,394 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,445 | INFO     | [job] control thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,519 | INFO     | [data] copytool_in thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,614 | INFO     | [payload] validate_post thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:10,715 | INFO     | [job] job monitor thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:11,141 | INFO     | [payload] control thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:11,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 22:43:57] 2026-03-02 21:43:11,399 | INFO     | [payload] failed_post thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:12,065 | INFO     | [data] copytool_out thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:15,232 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 22:43:57] 2026-03-02 21:43:39,305 | INFO     | PID=8897 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-02 22:43:57] 2026-03-02 21:43:39,305 | INFO     | .. there are 5 such processes running
[2026-03-02 22:43:57] 2026-03-02 21:43:39,306 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 22:43:57] 2026-03-02 21:43:39,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 22:43:57] 2026-03-02 21:43:39,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 22:43:57] 2026-03-02 21:43:51,755 | INFO     | [monitor] cgroup control has ended
[2026-03-02 22:43:57] 2026-03-02 21:43:52,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456056887040)>']
[2026-03-02 22:43:57] 2026-03-02 21:43:53,374 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 22:43:57] 2026-03-02 21:43:53,375 | INFO     | [monitor] control thread has ended
[2026-03-02 22:43:57] 2026-03-02 21:43:57,535 | INFO     | all workflow threads have been joined
[2026-03-02 22:43:57] 2026-03-02 21:43:57,535 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 22:43:57] 2026-03-02 21:43:57,535 | INFO     | traces error code: 0
[2026-03-02 22:43:57] 2026-03-02 21:43:57,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 22:43:57] 2026-03-02 21:43:57,588 [wrapper] ==== pilot stdout END ====
[2026-03-02 22:43:57] 2026-03-02 21:43:57,590 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 22:43:57] 2026-03-02 21:43:57,591 [wrapper] pilotpid: 8897
[2026-03-02 22:43:57] 2026-03-02 21:43:57,592 [wrapper] Pilot exit status: 0
[2026-03-02 22:43:57] 2026-03-02 21:43:57,595 [wrapper] pandaids: 7036015299
[2026-03-02 22:43:57] 2026-03-02 21:43:57,620 [wrapper] cleanup supervisor_pilot 28886 8898
[2026-03-02 22:43:57] 2026-03-02 21:43:57,621 [wrapper] Test setup, not cleaning
[2026-03-02 22:43:57] 2026-03-02 21:43:57,622 [wrapper] apfmon messages muted
[2026-03-02 22:43:57] 2026-03-02 21:43:57,623 [wrapper] ==== wrapper stdout END ====
[2026-03-02 22:43:57] 2026-03-02 21:43:57,624 [wrapper] ==== wrapper stderr END ====
[2026-03-02 22:43:57]  *** Error codes and diagnostics ***
[2026-03-02 22:43:57]     "exeErrorCode": 0,
[2026-03-02 22:43:57]     "exeErrorDiag": "",
[2026-03-02 22:43:57]     "pilotErrorCode": 0,
[2026-03-02 22:43:57]     "pilotErrorDiag": "",
[2026-03-02 22:43:57]  *** Listing of results directory ***
[2026-03-02 22:43:57] total 467432
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user    584627 Mar  2 15:48 pilot3.tar.gz
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user      5111 Mar  2 15:48 queuedata.json
[2026-03-02 22:43:57] -rwx------ 1 mf493845 unix-user     36322 Mar  2 15:48 runpilot2-wrapper.sh
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user       100 Mar  2 19:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 22:43:57] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  2 19:51 run_atlas
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user       105 Mar  2 19:51 job.xml
[2026-03-02 22:43:57] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  2 20:49 start_atlas.sh
[2026-03-02 22:43:57] drwxrwx--x 2 mf493845 unix-user       100 Mar  2 20:49 shared
[2026-03-02 22:43:57] -rw-r--r-- 2 mf493845 unix-user    597952 Mar  2 20:49 input.tar.gz
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user      6389 Mar  2 20:49 init_data.xml
[2026-03-02 22:43:57] -rw-r--r-- 2 mf493845 unix-user 229315514 Mar  2 20:49 EVNT.48454686._000001.pool.root.1
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user         0 Mar  2 20:49 boinc_setup_complete
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user      8192 Mar  2 20:49 boinc_mmap_file
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user         0 Mar  2 20:49 boinc_lockfile
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user      2621 Mar  2 20:49 pandaJob.out
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user    998470 Mar  2 20:49 agis_schedconf.cvmfs.json
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user   1512931 Mar  2 20:49 agis_ddmendpoints.agis.ALL.json
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user       420 Mar  2 20:49 workernode_map.json
[2026-03-02 22:43:57] drwx------ 5 mf493845 unix-user       440 Mar  2 20:49 pilot3
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user 242737819 Mar  2 22:42 HITS.48844933._000004.pool.root.1
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user      1020 Mar  2 22:43 memory_monitor_summary.json
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user    344008 Mar  2 22:43 log.48844933._000004.job.log.tgz.1
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user      6304 Mar  2 22:43 heartbeat.json
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user        95 Mar  2 22:43 pilot_heartbeat.json
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user      5434 Mar  2 22:43 pilotlog.txt
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user   1003705 Mar  2 22:43 log.48844933._000004.job.log.1
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user       357 Mar  2 22:43 output.list
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user       620 Mar  2 22:43 runtime_log
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user   1361920 Mar  2 22:43 result.tar.gz
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user      9219 Mar  2 22:43 runtime_log.err
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user       646 Mar  2 22:43 fgBNDmckJH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmgfDLDmkZTGYo.diag
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user     21500 Mar  2 22:43 stderr.txt
[2026-03-02 22:43:57] HITS file was successfully produced:
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user 242737819 Mar  2 22:42 shared/HITS.pool.root.1
[2026-03-02 22:43:57]  *** Contents of shared directory: ***
[2026-03-02 22:43:57] total 462928
[2026-03-02 22:43:57] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  2 20:49 start_atlas.sh
[2026-03-02 22:43:57] -rw-r--r-- 2 mf493845 unix-user    597952 Mar  2 20:49 input.tar.gz
[2026-03-02 22:43:57] -rw-r--r-- 2 mf493845 unix-user 229315514 Mar  2 20:49 ATLAS.root_0
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user 242737819 Mar  2 22:42 HITS.pool.root.1
[2026-03-02 22:43:57] -rw------- 1 mf493845 unix-user   1361920 Mar  2 22:43 result.tar.gz
22:43:59 (3963): run_atlas exited; CPU time 49709.105017
22:43:59 (3963): called boinc_finish(0)

</stderr_txt>
]]>

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