Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
00:04:23 (538605): wrapper (7.7.26015): starting
00:04:23 (538605): wrapper: running run_atlas (--nthreads 12)
[2026-03-03 00:04:23] Arguments: --nthreads 12
[2026-03-03 00:04:23] Threads: 12
[2026-03-03 00:04:23] Checking for CVMFS
[2026-03-03 00:04:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 00:04:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 00:04:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 00:04:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 00:04:24] 2.12.7.0 991347 8135 69888 156832 2 188 2224050 4194305 2751 130560 0 18054932 99.996 301216 2232 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-03 00:04:24] CVMFS is ok
[2026-03-03 00:04:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 00:04:24] Checking for apptainer binary...
[2026-03-03 00:04:24] apptainer is not installed, using version from CVMFS
[2026-03-03 00:04:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 00:04:24] Trebeth
[2026-03-03 00:04:24] apptainer works
[2026-03-03 00:04:24] Set ATHENA_PROC_NUMBER=12
[2026-03-03 00:04:24] Set ATHENA_CORE_NUMBER=12
[2026-03-03 00:04:24] Starting ATLAS job with PandaID=7035978577
[2026-03-03 00:04:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 01:14:51]  *** The last 200 lines of the pilot log: ***
[2026-03-03 01:14:51]  filesize=376720
[2026-03-03 01:14:51]  filetype=log
[2026-03-03 01:14:51]  guid=2aa0d80c-ed39-49c7-9696-8f7f59fb3bdd
[2026-03-03 01:14:51]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-03 01:14:51]  is_altstaged=None
[2026-03-03 01:14:51]  is_tar=False
[2026-03-03 01:14:51]  lfn=log.48838586._001204.job.log.tgz.1
[2026-03-03 01:14:51]  mtime=0
[2026-03-03 01:14:51]  protocol_id=None
[2026-03-03 01:14:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 01:14:51]  replicas=None
[2026-03-03 01:14:51]  scope=mc23_13p6TeV
[2026-03-03 01:14:51]  status=None
[2026-03-03 01:14:51]  status_code=0
[2026-03-03 01:14:51]  storage_token=
[2026-03-03 01:14:51]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-7035978577/log.48838586._001204.job.log.tgz.1
[2026-03-03 01:14:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/c9/log.48838586._001204.job.log.tgz.1
[2026-03-03 01:14:51]  workdir=None
[2026-03-03 01:14:51] ]
[2026-03-03 01:14:51] 2026-03-03 06:13:52,449 | INFO     | transferring file log.48838586._001204.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-7035978577/log.48838586._001204.job.log.tgz.1 to /var/lib/boinc
[2026-03-03 01:14:51] 2026-03-03 06:13:52,450 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-7035978577/log.48838586._001204.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.488385
[2026-03-03 01:14:51] 2026-03-03 06:13:52,465 | INFO     | adding to output.list: log.48838586._001204.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/c9/log.48838586._001204.job.log.tg
[2026-03-03 01:14:51] 2026-03-03 06:13:52,466 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 01:14:51] 2026-03-03 06:13:52,466 | INFO     | summary of transferred files:
[2026-03-03 01:14:51] 2026-03-03 06:13:52,466 | INFO     |  -- lfn=log.48838586._001204.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 01:14:51] 2026-03-03 06:13:52,466 | INFO     | stage-out finished correctly
[2026-03-03 01:14:51] 2026-03-03 06:13:52,507 | INFO     | monitor loop #313: job 0:7035978577 is in state 'finished'
[2026-03-03 01:14:51] 2026-03-03 06:13:52,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-03 01:14:51] 2026-03-03 06:13:52,636 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 01:14:51] 2026-03-03 06:13:53,098 | INFO     | time since job start (4154s) is within the limit (349056.0s)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,483 | INFO     | job 7035978577 has state=finished
[2026-03-03 01:14:51] 2026-03-03 06:13:54,484 | INFO     | preparing for final server update for job 7035978577 in state='finished'
[2026-03-03 01:14:51] 2026-03-03 06:13:54,484 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-7035978577/jobReport.json
[2026-03-03 01:14:51] 2026-03-03 06:13:54,487 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-03-03 01:14:51] 2026-03-03 06:13:54,488 | INFO     | this job has now completed (state=finished)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,488 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,488 | INFO     | log transfer has been attempted: DONE
[2026-03-03 01:14:51] 2026-03-03 06:13:54,488 | INFO     | job 7035978577 has finished - writing final server update
[2026-03-03 01:14:51] 2026-03-03 06:13:54,488 | INFO     | total number of processed events: 400 (read)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,516 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-7035978577/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,516 | INFO     | extracted standard info from prmon json
[2026-03-03 01:14:51] 2026-03-03 06:13:54,516 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 01:14:51] 2026-03-03 06:13:54,517 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 01:14:51] 2026-03-03 06:13:54,517 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 01:14:51] 2026-03-03 06:13:54,517 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 01:14:51] 2026-03-03 06:13:54,519 | INFO     | fitting pss+swap vs Time
[2026-03-03 01:14:51] 2026-03-03 06:13:54,519 | INFO     | sum of square deviations: 70364110.0
[2026-03-03 01:14:51] 2026-03-03 06:13:54,519 | INFO     | sum of deviations: 2969453404.0
[2026-03-03 01:14:51] 2026-03-03 06:13:54,520 | INFO     | mean x: 1772516433.0
[2026-03-03 01:14:51] 2026-03-03 06:13:54,520 | INFO     | mean y: 2691037.475409836
[2026-03-03 01:14:51] 2026-03-03 06:13:54,520 | INFO     | intersect: -74799718253.53656
[2026-03-03 01:14:51] 2026-03-03 06:13:54,520 | INFO     | chi2: 0.19503728048005742
[2026-03-03 01:14:51] 2026-03-03 06:13:54,520 | INFO     | current memory leak: 42.20 B/s (using 61 data points, chi2=0.20)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | could have reported an average CPU frequency of 2553 MHz (6 samples)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | ..............................
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | . Timing measurements:
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | . get job = 0 s
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | . initial setup = 5 s
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | . payload setup = 4 s
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | . stage-in = 0 s
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | . payload execution = 4131 s
[2026-03-03 01:14:51] 2026-03-03 06:13:54,521 | INFO     | . stage-out = 0 s
[2026-03-03 01:14:51] 2026-03-03 06:13:54,522 | INFO     | . log creation = 0 s
[2026-03-03 01:14:51] 2026-03-03 06:13:54,522 | INFO     | ..............................
[2026-03-03 01:14:51] 2026-03-03 06:13:54,694 | INFO     | 
[2026-03-03 01:14:51] 2026-03-03 06:13:54,695 | INFO     | job summary report
[2026-03-03 01:14:51] 2026-03-03 06:13:54,695 | INFO     | --------------------------------------------------
[2026-03-03 01:14:51] 2026-03-03 06:13:54,695 | INFO     | PanDA job id: 7035978577
[2026-03-03 01:14:51] 2026-03-03 06:13:54,695 | INFO     | task id: 48838586
[2026-03-03 01:14:51] 2026-03-03 06:13:54,695 | INFO     | errors: (none)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,695 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 01:14:51] 2026-03-03 06:13:54,695 | INFO     | pilot state: finished 
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | transexitcode: 0
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | exeerrorcode: 0
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | exeerrordiag: 
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | exitcode: 0
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | exitmsg: OK
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | cpuconsumptiontime: 43214 s
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | nevents: 400
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | neventsw: 0
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | pid: 547673
[2026-03-03 01:14:51] 2026-03-03 06:13:54,696 | INFO     | pgrp: 547673
[2026-03-03 01:14:51] 2026-03-03 06:13:54,697 | INFO     | corecount: 12
[2026-03-03 01:14:51] 2026-03-03 06:13:54,697 | INFO     | event service: False
[2026-03-03 01:14:51] 2026-03-03 06:13:54,697 | INFO     | sizes: {0: 2281796, 1: 2282257, 11: 2282257, 4140: 2308245, 4142: 2317313, 4144: 2317451}
[2026-03-03 01:14:51] 2026-03-03 06:13:54,697 | INFO     | --------------------------------------------------
[2026-03-03 01:14:51] 2026-03-03 06:13:54,697 | INFO     | 
[2026-03-03 01:14:51] 2026-03-03 06:13:54,697 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-03-03 01:14:51] 2026-03-03 06:13:54,715 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,715 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,715 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,715 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,717 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,717 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 01:14:51] 2026-03-03 06:13:54,717 | INFO     | job 7035978577 has completed (purged errors)
[2026-03-03 01:14:51] 2026-03-03 06:13:54,717 | INFO     | overall cleanup function is called
[2026-03-03 01:14:51] 2026-03-03 06:13:55,725 | INFO     | --- collectZombieJob: --- 10, [547673]
[2026-03-03 01:14:51] 2026-03-03 06:13:55,726 | INFO     | zombie collector waiting for pid 547673
[2026-03-03 01:14:51] 2026-03-03 06:13:55,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 01:14:51] 2026-03-03 06:13:55,726 | INFO     | collected zombie processes
[2026-03-03 01:14:51] 2026-03-03 06:13:55,726 | INFO     | will attempt to kill all subprocesses of pid=547673
[2026-03-03 01:14:51] 2026-03-03 06:13:55,951 | INFO     | process IDs to be killed: [547673] (in reverse order)
[2026-03-03 01:14:51] 2026-03-03 06:13:56,015 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 01:14:51] 2026-03-03 06:13:56,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 01:14:51] 2026-03-03 06:13:56,021 | INFO     | did not find any defunct processes belonging to 547673
[2026-03-03 01:14:51] 2026-03-03 06:13:56,026 | INFO     | did not find any defunct processes belonging to 547673
[2026-03-03 01:14:51] 2026-03-03 06:13:56,026 | INFO     | ready for new job
[2026-03-03 01:14:51] 2026-03-03 06:13:56,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 01:14:51] 2026-03-03 06:13:56,029 | INFO     | **************************************
[2026-03-03 01:14:51] 2026-03-03 06:13:56,029 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 01:14:51] 2026-03-03 06:13:56,029 | INFO     | **************************************
[2026-03-03 01:14:51] 2026-03-03 06:13:56,029 | INFO     | 
[2026-03-03 01:14:51] 2026-03-03 06:13:56,050 | INFO     | architecture information:
[2026-03-03 01:14:51] 2026-03-03 06:13:56,050 | INFO     | executing command: cat /etc/os-release
[2026-03-03 01:14:51] 2026-03-03 06:13:56,060 | INFO     | cat /etc/os-release:
[2026-03-03 01:14:51] NAME="CentOS Linux"
[2026-03-03 01:14:51] VERSION="7 (Core)"
[2026-03-03 01:14:51] ID="centos"
[2026-03-03 01:14:51] ID_LIKE="rhel fedora"
[2026-03-03 01:14:51] VERSION_ID="7"
[2026-03-03 01:14:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 01:14:51] ANSI_COLOR="0;31"
[2026-03-03 01:14:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 01:14:51] HOME_URL="https://www.centos.org/"
[2026-03-03 01:14:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 01:14:51] 
[2026-03-03 01:14:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 01:14:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 01:14:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 01:14:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 01:14:51] 
[2026-03-03 01:14:51] 2026-03-03 06:13:56,061 | INFO     | **************************************
[2026-03-03 01:14:51] 2026-03-03 06:13:56,563 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-03-03 01:14:51] 2026-03-03 06:13:56,578 | INFO     | sufficient remaining disk space (399741288448 B)
[2026-03-03 01:14:51] 2026-03-03 06:13:56,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 01:14:51] 2026-03-03 06:13:56,578 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 01:14:51] 2026-03-03 06:13:56,578 | INFO     | update_server=False
[2026-03-03 01:14:51] 2026-03-03 06:13:56,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 01:14:51] 2026-03-03 06:13:56,579 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 01:14:51] 2026-03-03 06:13:56,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 01:14:51] 2026-03-03 06:13:56,579 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 01:14:51] 2026-03-03 06:13:56,580 | INFO     | aborting loop
[2026-03-03 01:14:51] 2026-03-03 06:13:56,646 | INFO     | all job control threads have been joined
[2026-03-03 01:14:51] 2026-03-03 06:13:56,702 | INFO     | all data control threads have been joined
[2026-03-03 01:14:51] 2026-03-03 06:13:56,972 | INFO     | all payload control threads have been joined
[2026-03-03 01:14:51] 2026-03-03 06:13:57,583 | INFO     | [job] retrieve thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,583 | INFO     | [job] queue monitor thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,585 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,585 | INFO     | [job] job monitor thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,631 | INFO     | [payload] validate_post thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,652 | INFO     | [job] control thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,674 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,703 | INFO     | [data] control thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,910 | INFO     | [data] copytool_in thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:57,978 | INFO     | [payload] control thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:58,575 | INFO     | [payload] failed_post thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:58,580 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:58,585 | INFO     | [data] copytool_out thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:13:58,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 01:14:51] 2026-03-03 06:13:58,750 | INFO     | [job] validate thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:14:02,738 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:14:07,618 | INFO     | job.realtimelogging is not enabled
[2026-03-03 01:14:51] 2026-03-03 06:14:08,623 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 01:14:51] 2026-03-03 06:14:26,449 | INFO     | PID=542888 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-03 01:14:51] 2026-03-03 06:14:26,450 | INFO     | .. there are 4 such processes running
[2026-03-03 01:14:51] 2026-03-03 06:14:26,450 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 01:14:51] 2026-03-03 06:14:26,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 01:14:51] 2026-03-03 06:14:26,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 01:14:51] 2026-03-03 06:14:45,330 | INFO     | [monitor] cgroup control has ended
[2026-03-03 01:14:51] 2026-03-03 06:14:46,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140625624373056)>', '<ExcThread(monitor, started 140625173260032)>']
[2026-03-03 01:14:51] 2026-03-03 06:14:46,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 01:14:51] 2026-03-03 06:14:46,547 | INFO     | [monitor] control thread has ended
[2026-03-03 01:14:51] 2026-03-03 06:14:51,222 | INFO     | all workflow threads have been joined
[2026-03-03 01:14:51] 2026-03-03 06:14:51,223 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 01:14:51] 2026-03-03 06:14:51,223 | INFO     | traces error code: 0
[2026-03-03 01:14:51] 2026-03-03 06:14:51,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 01:14:51] 2026-03-03 06:14:51,343 [wrapper] ==== pilot stdout END ====
[2026-03-03 01:14:51] 2026-03-03 06:14:51,345 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 01:14:51] 2026-03-03 06:14:51,347 [wrapper] pilotpid: 542888
[2026-03-03 01:14:51] 2026-03-03 06:14:51,348 [wrapper] Pilot exit status: 0
[2026-03-03 01:14:51] 2026-03-03 06:14:51,355 [wrapper] pandaids: 7035978577
[2026-03-03 01:14:51] 2026-03-03 06:14:51,406 [wrapper] cleanup supervisor_pilot  564153 542889
[2026-03-03 01:14:51] 2026-03-03 06:14:51,408 [wrapper] Test setup, not cleaning
[2026-03-03 01:14:51] 2026-03-03 06:14:51,410 [wrapper] apfmon messages muted
[2026-03-03 01:14:51] 2026-03-03 06:14:51,412 [wrapper] ==== wrapper stdout END ====
[2026-03-03 01:14:51] 2026-03-03 06:14:51,413 [wrapper] ==== wrapper stderr END ====
[2026-03-03 01:14:51]  *** Error codes and diagnostics ***
[2026-03-03 01:14:51]     "exeErrorCode": 0,
[2026-03-03 01:14:51]     "exeErrorDiag": "",
[2026-03-03 01:14:51]     "pilotErrorCode": 0,
[2026-03-03 01:14:51]     "pilotErrorDiag": "",
[2026-03-03 01:14:51]  *** Listing of results directory ***
[2026-03-03 01:14:51] total 480564
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc    584627 Mar  2 07:41 pilot3.tar.gz
[2026-03-03 01:14:51] -rwx------ 1 boinc boinc     36322 Mar  2 07:45 runpilot2-wrapper.sh
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc      5111 Mar  2 07:46 queuedata.json
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc       100 Mar  3 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 01:14:51] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 00:04 run_atlas
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc       105 Mar  3 00:04 job.xml
[2026-03-03 01:14:51] -rw-r--r-- 2 boinc boinc     15845 Mar  3 00:04 start_atlas.sh
[2026-03-03 01:14:51] drwxrwx--x 2 boinc boinc      4096 Mar  3 00:04 shared
[2026-03-03 01:14:51] -rw-r--r-- 2 boinc boinc    597953 Mar  3 00:04 input.tar.gz
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc      7579 Mar  3 00:04 init_data.xml
[2026-03-03 01:14:51] -rw-r--r-- 2 boinc boinc 277027041 Mar  3 00:04 EVNT.48220221._000046.pool.root.1
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc         0 Mar  3 00:04 boinc_lockfile
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc      2561 Mar  3 00:04 pandaJob.out
[2026-03-03 01:14:51] -rw------- 1 boinc boinc        50 Mar  3 00:04 setup.sh.local
[2026-03-03 01:14:51] -rw------- 1 boinc boinc    997730 Mar  3 00:04 agis_schedconf.cvmfs.json
[2026-03-03 01:14:51] -rw------- 1 boinc boinc   1512931 Mar  3 00:04 agis_ddmendpoints.agis.ALL.json
[2026-03-03 01:14:51] -rw------- 1 boinc boinc       430 Mar  3 00:04 workernode_map.json
[2026-03-03 01:14:51] drwx------ 5 boinc boinc      4096 Mar  3 00:04 pilot3
[2026-03-03 01:14:51] -rw------- 1 boinc boinc 209130149 Mar  3 01:13 HITS.48838586._001204.pool.root.1
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc       529 Mar  3 01:13 boinc_task_state.xml
[2026-03-03 01:14:51] -rw------- 1 boinc boinc        95 Mar  3 01:13 pilot_heartbeat.json
[2026-03-03 01:14:51] -rw------- 1 boinc boinc      1026 Mar  3 01:13 memory_monitor_summary.json
[2026-03-03 01:14:51] -rw------- 1 boinc boinc    376720 Mar  3 01:13 log.48838586._001204.job.log.tgz.1
[2026-03-03 01:14:51] -rw------- 1 boinc boinc      6327 Mar  3 01:13 heartbeat.json
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc      8192 Mar  3 01:14 boinc_mmap_file
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc        27 Mar  3 01:14 wrapper_checkpoint.txt
[2026-03-03 01:14:51] -rw------- 1 boinc boinc      4898 Mar  3 01:14 pilotlog.txt
[2026-03-03 01:14:51] -rw------- 1 boinc boinc    625159 Mar  3 01:14 log.48838586._001204.job.log.1
[2026-03-03 01:14:51] -rw------- 1 boinc boinc       357 Mar  3 01:14 output.list
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc       620 Mar  3 01:14 runtime_log
[2026-03-03 01:14:51] -rw------- 1 boinc boinc   1024000 Mar  3 01:14 result.tar.gz
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc      9403 Mar  3 01:14 runtime_log.err
[2026-03-03 01:14:51] -rw------- 1 boinc boinc       650 Mar  3 01:14 GzmLDm5oHH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmDSDLDmkwnZNm.diag
[2026-03-03 01:14:51] -rw-r--r-- 1 boinc boinc     20918 Mar  3 01:14 stderr.txt
[2026-03-03 01:14:51] HITS file was successfully produced:
[2026-03-03 01:14:51] -rw------- 1 boinc boinc 209130149 Mar  3 01:13 shared/HITS.pool.root.1
[2026-03-03 01:14:51]  *** Contents of shared directory: ***
[2026-03-03 01:14:51] total 476376
[2026-03-03 01:14:51] -rw-r--r-- 2 boinc boinc     15845 Mar  3 00:04 start_atlas.sh
[2026-03-03 01:14:51] -rw-r--r-- 2 boinc boinc    597953 Mar  3 00:04 input.tar.gz
[2026-03-03 01:14:51] -rw-r--r-- 2 boinc boinc 277027041 Mar  3 00:04 ATLAS.root_0
[2026-03-03 01:14:51] -rw------- 1 boinc boinc 209130149 Mar  3 01:13 HITS.pool.root.1
[2026-03-03 01:14:51] -rw------- 1 boinc boinc   1024000 Mar  3 01:14 result.tar.gz
01:14:53 (538605): run_atlas exited; CPU time 43266.285695
01:14:53 (538605): called boinc_finish(0)

</stderr_txt>
]]>

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