Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:40:39 (5074): wrapper (7.7.26015): starting
20:40:39 (5074): wrapper: running run_atlas (--nthreads 8)
[2026-03-02 20:40:39] Arguments: --nthreads 8
[2026-03-02 20:40:39] Threads: 8
[2026-03-02 20:40:39] Checking for CVMFS
[2026-03-02 20:40:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 20:40:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 20:40:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 20:40:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 20:40:39] 2.11.0.0 8514 204185 74656 156818 1 188 2400257 4096000 2751 130560 3 9608734 99.258 14542055 495 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-02 20:40:39] CVMFS is ok
[2026-03-02 20:40:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 20:40:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 20:40:39] Further information can be found at the LHC@home message board.
[2026-03-02 20:40:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 20:40:39] Checking for apptainer binary...
[2026-03-02 20:40:39] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-02 20:40:39] apptainer is not installed, using version from CVMFS
[2026-03-02 20:40:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 20:40:40] WARNING: Environment variable TMPDIR already has value [/tmp/job_11244605/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node332
[2026-03-02 20:40:40] apptainer works
[2026-03-02 20:40:40] Set ATHENA_PROC_NUMBER=8
[2026-03-02 20:40:40] Set ATHENA_CORE_NUMBER=8
[2026-03-02 20:40:40] Starting ATLAS job with PandaID=7036003059
[2026-03-02 20:40:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11244605/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 21:32:04]  *** The last 200 lines of the pilot log: ***
[2026-03-02 21:32:04]  direct_access_lan=False
[2026-03-02 21:32:04]  direct_access_wan=False
[2026-03-02 21:32:04]  domain=
[2026-03-02 21:32:04]  filesize=316217
[2026-03-02 21:32:04]  filetype=log
[2026-03-02 21:32:04]  guid=7329c02f-9b65-47f0-8f85-fb889ca0eb60
[2026-03-02 21:32:04]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-02 21:32:04]  is_altstaged=None
[2026-03-02 21:32:04]  is_tar=False
[2026-03-02 21:32:04]  lfn=log.48847427._000050.job.log.tgz.1
[2026-03-02 21:32:04]  mtime=0
[2026-03-02 21:32:04]  protocol_id=None
[2026-03-02 21:32:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-02 21:32:04]  replicas=None
[2026-03-02 21:32:04]  scope=mc23_13p6TeV
[2026-03-02 21:32:04]  status=None
[2026-03-02 21:32:04]  status_code=0
[2026-03-02 21:32:04]  storage_token=
[2026-03-02 21:32:04]  surl=/tmp/job_11244605/atlas/pilot/slots/0/PanDA_Pilot-7036003059/log.48847427._000050.job.log.tgz.1
[2026-03-02 21:32:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/e2/log.48847427._000050.job.log.tgz.1
[2026-03-02 21:32:04]  workdir=None
[2026-03-02 21:32:04] ]
[2026-03-02 21:32:04] 2026-03-02 20:31:31,889 | INFO     | transferring file log.48847427._000050.job.log.tgz.1 from /tmp/job_11244605/atlas/pilot/slots/0/PanDA_Pilot-7036003059/log.48847427._000050.job.log.tgz.1 to /tmp/j
[2026-03-02 21:32:04] 2026-03-02 20:31:31,890 | INFO     | executing command: /usr/bin/env mv /tmp/job_11244605/atlas/pilot/slots/0/PanDA_Pilot-7036003059/log.48847427._000050.job.log.tgz.1 /tmp/job_11244605/atlas/pilot/sl
[2026-03-02 21:32:04] 2026-03-02 20:31:31,898 | INFO     | adding to output.list: log.48847427._000050.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/e2/log.48847427._000050.job.log.tg
[2026-03-02 21:32:04] 2026-03-02 20:31:31,899 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-02 21:32:04] 2026-03-02 20:31:31,899 | INFO     | summary of transferred files:
[2026-03-02 21:32:04] 2026-03-02 20:31:31,899 | INFO     |  -- lfn=log.48847427._000050.job.log.tgz.1, status_code=0, status=transferred
[2026-03-02 21:32:04] 2026-03-02 20:31:31,899 | INFO     | stage-out finished correctly
[2026-03-02 21:32:04] 2026-03-02 20:31:31,948 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-02 21:32:04] 2026-03-02 20:31:31,992 | INFO     | job 7036003059 has state=finished
[2026-03-02 21:32:04] 2026-03-02 20:31:31,993 | INFO     | preparing for final server update for job 7036003059 in state='finished'
[2026-03-02 21:32:04] 2026-03-02 20:31:31,993 | INFO     | reading metadata from: /tmp/job_11244605/atlas/pilot/slots/0/PanDA_Pilot-7036003059/jobReport.json
[2026-03-02 21:32:04] 2026-03-02 20:31:31,994 | INFO     | added worker_node to metadata from /tmp/job_11244605/atlas/pilot/slots/0/workernode_map.json
[2026-03-02 21:32:04] 2026-03-02 20:31:31,994 | INFO     | this job has now completed (state=finished)
[2026-03-02 21:32:04] 2026-03-02 20:31:31,994 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-02 21:32:04] 2026-03-02 20:31:31,994 | INFO     | log transfer has been attempted: DONE
[2026-03-02 21:32:04] 2026-03-02 20:31:31,994 | INFO     | job 7036003059 has finished - writing final server update
[2026-03-02 21:32:04] 2026-03-02 20:31:31,994 | INFO     | total number of processed events: 400 (read)
[2026-03-02 21:32:04] 2026-03-02 20:31:32,012 | INFO     | using path: /tmp/job_11244605/atlas/pilot/slots/0/PanDA_Pilot-7036003059/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 21:32:04] 2026-03-02 20:31:32,013 | INFO     | extracted standard info from prmon json
[2026-03-02 21:32:04] 2026-03-02 20:31:32,013 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 21:32:04] 2026-03-02 20:31:32,013 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 21:32:04] 2026-03-02 20:31:32,013 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 21:32:04] 2026-03-02 20:31:32,013 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 21:32:04] 2026-03-02 20:31:32,013 | INFO     | fitting pss+swap vs Time
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | sum of square deviations: 24640462.0
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | sum of deviations: -869444040.9999999
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | mean x: 1772482048.0
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | mean y: 2590299.2093023257
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | intersect: 62545003441.18188
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | chi2: 0.00413183605018276
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | current memory leak: -35.29 B/s (using 43 data points, chi2=0.00)
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | could have reported an average CPU frequency of 2723 MHz (5 samples)
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | ..............................
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | . Timing measurements:
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | . get job = 0 s
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | . initial setup = 2 s
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | . payload setup = 2 s
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | . stage-in = 0 s
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | . payload execution = 3027 s
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | . stage-out = 0 s
[2026-03-02 21:32:04] 2026-03-02 20:31:32,014 | INFO     | . log creation = 0 s
[2026-03-02 21:32:04] 2026-03-02 20:31:32,015 | INFO     | ..............................
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | 
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | job summary report
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | --------------------------------------------------
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | PanDA job id: 7036003059
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | task id: 48847427
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | errors: (none)
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | pilot state: finished 
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | transexitcode: 0
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | exeerrorcode: 0
[2026-03-02 21:32:04] 2026-03-02 20:31:32,061 | INFO     | exeerrordiag: 
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | exitcode: 0
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | exitmsg: OK
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | cpuconsumptiontime: 22260 s
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | nevents: 400
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | neventsw: 0
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | pid: 15539
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | pgrp: 15539
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | corecount: 8
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | event service: False
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | sizes: {0: 2282444, 11: 2282444, 3032: 2307970, 3033: 2307969, 3034: 2317279}
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | --------------------------------------------------
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | 
[2026-03-02 21:32:04] 2026-03-02 20:31:32,062 | INFO     | executing command: ls -lF /tmp/job_11244605/atlas/pilot/slots/0
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,072 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | job 7036003059 has completed (purged errors)
[2026-03-02 21:32:04] 2026-03-02 20:31:32,073 | INFO     | overall cleanup function is called
[2026-03-02 21:32:04] 2026-03-02 20:31:33,079 | INFO     | --- collectZombieJob: --- 10, [15539]
[2026-03-02 21:32:04] 2026-03-02 20:31:33,079 | INFO     | zombie collector waiting for pid 15539
[2026-03-02 21:32:04] 2026-03-02 20:31:33,079 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 21:32:04] 2026-03-02 20:31:33,079 | INFO     | collected zombie processes
[2026-03-02 21:32:04] 2026-03-02 20:31:33,079 | INFO     | will attempt to kill all subprocesses of pid=15539
[2026-03-02 21:32:04] 2026-03-02 20:31:33,192 | INFO     | process IDs to be killed: [15539] (in reverse order)
[2026-03-02 21:32:04] 2026-03-02 20:31:33,234 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 21:32:04] 2026-03-02 20:31:33,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 21:32:04] 2026-03-02 20:31:33,239 | INFO     | did not find any defunct processes belonging to 15539
[2026-03-02 21:32:04] 2026-03-02 20:31:33,242 | INFO     | did not find any defunct processes belonging to 15539
[2026-03-02 21:32:04] 2026-03-02 20:31:33,242 | INFO     | ready for new job
[2026-03-02 21:32:04] 2026-03-02 20:31:33,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 21:32:04] 2026-03-02 20:31:33,243 | INFO     | **************************************
[2026-03-02 21:32:04] 2026-03-02 20:31:33,243 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 21:32:04] 2026-03-02 20:31:33,243 | INFO     | **************************************
[2026-03-02 21:32:04] 2026-03-02 20:31:33,243 | INFO     | 
[2026-03-02 21:32:04] 2026-03-02 20:31:33,257 | INFO     | architecture information:
[2026-03-02 21:32:04] 2026-03-02 20:31:33,257 | INFO     | executing command: cat /etc/os-release
[2026-03-02 21:32:04] 2026-03-02 20:31:33,262 | INFO     | cat /etc/os-release:
[2026-03-02 21:32:04] NAME="CentOS Linux"
[2026-03-02 21:32:04] VERSION="7 (Core)"
[2026-03-02 21:32:04] ID="centos"
[2026-03-02 21:32:04] ID_LIKE="rhel fedora"
[2026-03-02 21:32:04] VERSION_ID="7"
[2026-03-02 21:32:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 21:32:04] ANSI_COLOR="0;31"
[2026-03-02 21:32:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 21:32:04] HOME_URL="https://www.centos.org/"
[2026-03-02 21:32:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 21:32:04] 
[2026-03-02 21:32:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 21:32:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 21:32:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 21:32:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 21:32:04] 
[2026-03-02 21:32:04] 2026-03-02 20:31:33,262 | INFO     | **************************************
[2026-03-02 21:32:04] 2026-03-02 20:31:33,765 | INFO     | executing command: df -mP /tmp/job_11244605/atlas/pilot/slots/0
[2026-03-02 21:32:04] 2026-03-02 20:31:33,772 | INFO     | sufficient remaining disk space (223776604160 B)
[2026-03-02 21:32:04] 2026-03-02 20:31:33,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 21:32:04] 2026-03-02 20:31:33,772 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 21:32:04] 2026-03-02 20:31:33,772 | INFO     | update_server=False
[2026-03-02 21:32:04] 2026-03-02 20:31:33,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 21:32:04] 2026-03-02 20:31:33,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 21:32:04] 2026-03-02 20:31:33,772 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 21:32:04] 2026-03-02 20:31:34,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 21:32:04] 2026-03-02 20:31:34,021 | INFO     | aborting loop
[2026-03-02 21:32:04] 2026-03-02 20:31:34,336 | INFO     | all data control threads have been joined
[2026-03-02 21:32:04] 2026-03-02 20:31:34,777 | INFO     | [job] retrieve thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:34,778 | INFO     | [job] queue monitor thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:34,800 | INFO     | job.realtimelogging is not enabled
[2026-03-02 21:32:04] 2026-03-02 20:31:34,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 21:32:04] 2026-03-02 20:31:35,027 | INFO     | [job] job monitor thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:35,224 | INFO     | [job] validate thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:35,272 | INFO     | all payload control threads have been joined
[2026-03-02 21:32:04] 2026-03-02 20:31:35,314 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:35,341 | INFO     | [data] control thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:35,387 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:35,389 | INFO     | all job control threads have been joined
[2026-03-02 21:32:04] 2026-03-02 20:31:35,422 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:35,550 | INFO     | [data] copytool_in thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:35,635 | INFO     | [payload] failed_post thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:35,805 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:36,090 | INFO     | [payload] validate_post thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:36,277 | INFO     | [payload] control thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:36,394 | INFO     | [job] control thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:36,958 | INFO     | [data] copytool_out thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:37,778 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 21:32:04] 2026-03-02 20:31:50,890 | INFO     | [monitor] cgroup control has ended
[2026-03-02 21:32:04] 2026-03-02 20:31:51,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-02 21:32:04] 2026-03-02 20:31:56,504 | INFO     | all workflow threads have been joined
[2026-03-02 21:32:04] 2026-03-02 20:31:56,504 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 21:32:04] 2026-03-02 20:31:56,504 | INFO     | traces error code: 0
[2026-03-02 21:32:04] 2026-03-02 20:31:56,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 21:32:04] 2026-03-02 20:32:04,391 | INFO     | PID=9787 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-02 21:32:04] 2026-03-02 20:32:04,391 | INFO     | .. there are 8 such processes running
[2026-03-02 21:32:04] 2026-03-02 20:32:04,391 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 21:32:04] 2026-03-02 20:32:04,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 21:32:04] 2026-03-02 20:32:04,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 21:32:04] 2026-03-02 20:32:04,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 21:32:04] 2026-03-02 20:32:04,391 | INFO     | [monitor] control thread has ended
[2026-03-02 21:32:04] 2026-03-02 20:32:04,454 [wrapper] ==== pilot stdout END ====
[2026-03-02 21:32:04] 2026-03-02 20:32:04,456 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 21:32:04] 2026-03-02 20:32:04,457 [wrapper] pilotpid: 9787
[2026-03-02 21:32:04] 2026-03-02 20:32:04,458 [wrapper] Pilot exit status: 0
[2026-03-02 21:32:04] 2026-03-02 20:32:04,463 [wrapper] pandaids: 7036003059
[2026-03-02 21:32:04] 2026-03-02 20:32:04,495 [wrapper] cleanup supervisor_pilot 14167 9788
[2026-03-02 21:32:04] 2026-03-02 20:32:04,497 [wrapper] Test setup, not cleaning
[2026-03-02 21:32:04] 2026-03-02 20:32:04,498 [wrapper] apfmon messages muted
[2026-03-02 21:32:04] 2026-03-02 20:32:04,499 [wrapper] ==== wrapper stdout END ====
[2026-03-02 21:32:04] 2026-03-02 20:32:04,500 [wrapper] ==== wrapper stderr END ====
[2026-03-02 21:32:04]  *** Error codes and diagnostics ***
[2026-03-02 21:32:04]     "exeErrorCode": 0,
[2026-03-02 21:32:04]     "exeErrorDiag": "",
[2026-03-02 21:32:04]     "pilotErrorCode": 0,
[2026-03-02 21:32:04]     "pilotErrorDiag": "",
[2026-03-02 21:32:04]  *** Listing of results directory ***
[2026-03-02 21:32:04] total 468256
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user      5111 Mar  2 14:57 queuedata.json
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user    584627 Mar  2 14:57 pilot3.tar.gz
[2026-03-02 21:32:04] -rwx------ 1 mf493845 unix-user     36322 Mar  2 14:58 runpilot2-wrapper.sh
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user       100 Mar  2 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 21:32:04] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  2 19:30 run_atlas
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user       105 Mar  2 19:30 job.xml
[2026-03-02 21:32:04] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  2 20:40 start_atlas.sh
[2026-03-02 21:32:04] drwxrwx--x 2 mf493845 unix-user       100 Mar  2 20:40 shared
[2026-03-02 21:32:04] -rw-r--r-- 2 mf493845 unix-user    597955 Mar  2 20:40 input.tar.gz
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user      6390 Mar  2 20:40 init_data.xml
[2026-03-02 21:32:04] -rw-r--r-- 2 mf493845 unix-user 274071950 Mar  2 20:40 EVNT.48453642._000002.pool.root.1
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user         0 Mar  2 20:40 boinc_setup_complete
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user      8192 Mar  2 20:40 boinc_mmap_file
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user         0 Mar  2 20:40 boinc_lockfile
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user      2594 Mar  2 20:40 pandaJob.out
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user    998470 Mar  2 20:40 agis_schedconf.cvmfs.json
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user   1512931 Mar  2 20:40 agis_ddmendpoints.agis.ALL.json
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user       420 Mar  2 20:40 workernode_map.json
[2026-03-02 21:32:04] drwx------ 5 mf493845 unix-user       440 Mar  2 20:40 pilot3
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user 199921674 Mar  2 21:31 HITS.48847427._000050.pool.root.1
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user        95 Mar  2 21:31 pilot_heartbeat.json
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user      1023 Mar  2 21:31 memory_monitor_summary.json
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user    316217 Mar  2 21:31 log.48847427._000050.job.log.tgz.1
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user      6298 Mar  2 21:31 heartbeat.json
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user       819 Mar  2 21:32 pilotlog.txt
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user    480642 Mar  2 21:32 log.48847427._000050.job.log.1
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user       357 Mar  2 21:32 output.list
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user       620 Mar  2 21:32 runtime_log
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user    819200 Mar  2 21:32 result.tar.gz
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user      9219 Mar  2 21:32 runtime_log.err
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user       641 Mar  2 21:32 AliNDmsxIH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmVWBLDmqCBfxn.diag
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user     21424 Mar  2 21:32 stderr.txt
[2026-03-02 21:32:04] HITS file was successfully produced:
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user 199921674 Mar  2 21:31 shared/HITS.pool.root.1
[2026-03-02 21:32:04]  *** Contents of shared directory: ***
[2026-03-02 21:32:04] total 464292
[2026-03-02 21:32:04] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  2 20:40 start_atlas.sh
[2026-03-02 21:32:04] -rw-r--r-- 2 mf493845 unix-user    597955 Mar  2 20:40 input.tar.gz
[2026-03-02 21:32:04] -rw-r--r-- 2 mf493845 unix-user 274071950 Mar  2 20:40 ATLAS.root_0
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user 199921674 Mar  2 21:31 HITS.pool.root.1
[2026-03-02 21:32:04] -rw------- 1 mf493845 unix-user    819200 Mar  2 21:32 result.tar.gz
21:32:06 (5074): run_atlas exited; CPU time 22302.851137
21:32:06 (5074): called boinc_finish(0)

</stderr_txt>
]]>

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