Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:33:35 (900065): wrapper (7.7.26015): starting
10:33:35 (900065): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 10:33:35] Arguments: --nthreads 4
[2026-03-03 10:33:35] Threads: 4
[2026-03-03 10:33:35] Checking for CVMFS
[2026-03-03 10:33:35] No cvmfs_config command found, will try listing directly
[2026-03-03 10:33:35] CVMFS is ok
[2026-03-03 10:33:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 10:33:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 10:33:35] Further information can be found at the LHC@home message board.
[2026-03-03 10:33:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 10:33:35] Checking for apptainer binary...
[2026-03-03 10:33:35] which: no apptainer in ((null))
[2026-03-03 10:33:35] apptainer is not installed, using version from CVMFS
[2026-03-03 10:33:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 10:33:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2026-03-03 10:33:36] apptainer works
[2026-03-03 10:33:36] Set ATHENA_PROC_NUMBER=4
[2026-03-03 10:33:36] Set ATHENA_CORE_NUMBER=4
[2026-03-03 10:33:36] Starting ATLAS job with PandaID=7035989633
[2026-03-03 10:33:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 13:53:49]  *** The last 200 lines of the pilot log: ***
[2026-03-03 13:53:49] 2026-03-03 12:47:23,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,598 | INFO     | job 7035989633 has state=finished
[2026-03-03 13:53:49] 2026-03-03 12:47:23,598 | INFO     | preparing for final server update for job 7035989633 in state='finished'
[2026-03-03 13:53:49] 2026-03-03 12:47:23,599 | INFO     | reading metadata from: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-7035989633/jobReport.json
[2026-03-03 13:53:49] 2026-03-03 12:47:23,601 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot28/slots/0/workernode_map.json
[2026-03-03 13:53:49] 2026-03-03 12:47:23,602 | INFO     | this job has now completed (state=finished)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,602 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,602 | INFO     | log transfer has been attempted: DONE
[2026-03-03 13:53:49] 2026-03-03 12:47:23,602 | INFO     | job 7035989633 has finished - writing final server update
[2026-03-03 13:53:49] 2026-03-03 12:47:23,602 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1720862/.job.ad'
[2026-03-03 13:53:49] 2026-03-03 12:47:23,603 | INFO     | total number of processed events: 400 (read)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,615 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-7035989633/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,615 | INFO     | extracted standard info from prmon json
[2026-03-03 13:53:49] 2026-03-03 12:47:23,615 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 13:53:49] 2026-03-03 12:47:23,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 13:53:49] 2026-03-03 12:47:23,616 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 13:53:49] 2026-03-03 12:47:23,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 13:53:49] 2026-03-03 12:47:23,619 | INFO     | fitting pss+swap vs Time
[2026-03-03 13:53:49] 2026-03-03 12:47:23,620 | INFO     | sum of square deviations: 2126802667.5
[2026-03-03 13:53:49] 2026-03-03 12:47:23,621 | INFO     | sum of deviations: 12172751879.499989
[2026-03-03 13:53:49] 2026-03-03 12:47:23,621 | INFO     | mean x: 1772536220.5
[2026-03-03 13:53:49] 2026-03-03 12:47:23,621 | INFO     | mean y: 2346100.4789473685
[2026-03-03 13:53:49] 2026-03-03 12:47:23,621 | INFO     | intersect: -10142762300.63847
[2026-03-03 13:53:49] 2026-03-03 12:47:23,622 | INFO     | chi2: 1.3608234785871198
[2026-03-03 13:53:49] 2026-03-03 12:47:23,622 | INFO     | sum of square deviations: 1963274020.0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,624 | INFO     | sum of deviations: 11716082669.00001
[2026-03-03 13:53:49] 2026-03-03 12:47:23,624 | INFO     | mean x: 1772536068.0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,624 | INFO     | mean y: 2345674.502702703
[2026-03-03 13:53:49] 2026-03-03 12:47:23,624 | INFO     | intersect: -10575484467.8593
[2026-03-03 13:53:49] 2026-03-03 12:47:23,624 | INFO     | chi2: 1.3615800064315617
[2026-03-03 13:53:49] 2026-03-03 12:47:23,624 | INFO     | current chi2=1.3615800064315617 (change=-0.055593385648179734 %)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,624 | INFO     | right removable region: 184
[2026-03-03 13:53:49] 2026-03-03 12:47:23,625 | INFO     | sum of square deviations: 1963274020.0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,626 | INFO     | sum of deviations: -11948882093.0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,626 | INFO     | mean x: 1772536373.0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,626 | INFO     | mean y: 2368284.2594594597
[2026-03-03 13:53:49] 2026-03-03 12:47:23,626 | INFO     | intersect: 10790382545.524357
[2026-03-03 13:53:49] 2026-03-03 12:47:23,627 | INFO     | chi2: 0.03180074763651682
[2026-03-03 13:53:49] 2026-03-03 12:47:23,627 | INFO     | current chi2=0.03180074763651682 (change=97.66312470817053 %)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,627 | INFO     | sum of square deviations: 1808350185.0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,628 | INFO     | sum of deviations: -11166914522.499992
[2026-03-03 13:53:49] 2026-03-03 12:47:23,628 | INFO     | mean x: 1772536525.5
[2026-03-03 13:53:49] 2026-03-03 12:47:23,629 | INFO     | mean y: 2367494.7055555554
[2026-03-03 13:53:49] 2026-03-03 12:47:23,629 | INFO     | intersect: 10948125695.995329
[2026-03-03 13:53:49] 2026-03-03 12:47:23,629 | INFO     | chi2: 0.02880694426451702
[2026-03-03 13:53:49] 2026-03-03 12:47:23,629 | INFO     | current chi2=0.02880694426451702 (change=9.414254677968689 %)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,629 | INFO     | left removable region: 20
[2026-03-03 13:53:49] 2026-03-03 12:47:23,630 | INFO     | sum of square deviations: 1367709365.0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,631 | INFO     | sum of deviations: -6049696776.999999
[2026-03-03 13:53:49] 2026-03-03 12:47:23,631 | INFO     | mean x: 1772536647.5
[2026-03-03 13:53:49] 2026-03-03 12:47:23,631 | INFO     | mean y: 2362014.7682926827
[2026-03-03 13:53:49] 2026-03-03 12:47:23,631 | INFO     | intersect: 7842704062.506726
[2026-03-03 13:53:49] 2026-03-03 12:47:23,631 | INFO     | chi2: 0.02016002596130881
[2026-03-03 13:53:49] 2026-03-03 12:47:23,631 | INFO     | current memory leak: -4.42 B/s (using 164 data points, chi2=0.02)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,632 | INFO     | could have reported an average CPU frequency of 2605 MHz (10 samples)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,632 | INFO     | ..............................
[2026-03-03 13:53:49] 2026-03-03 12:47:23,632 | INFO     | . Timing measurements:
[2026-03-03 13:53:49] 2026-03-03 12:47:23,632 | INFO     | . get job = 0 s
[2026-03-03 13:53:49] 2026-03-03 12:47:23,632 | INFO     | . initial setup = 6 s
[2026-03-03 13:53:49] 2026-03-03 12:47:23,633 | INFO     | . payload setup = 6 s
[2026-03-03 13:53:49] 2026-03-03 12:47:23,633 | INFO     | . stage-in = 0 s
[2026-03-03 13:53:49] 2026-03-03 12:47:23,633 | INFO     | . payload execution = 11587 s
[2026-03-03 13:53:49] 2026-03-03 12:47:23,633 | INFO     | . stage-out = 1 s
[2026-03-03 13:53:49] 2026-03-03 12:47:23,633 | INFO     | . log creation = 0 s
[2026-03-03 13:53:49] 2026-03-03 12:47:23,633 | INFO     | ..............................
[2026-03-03 13:53:49] 2026-03-03 12:47:23,733 | INFO     | 
[2026-03-03 13:53:49] 2026-03-03 12:47:23,733 | INFO     | job summary report
[2026-03-03 13:53:49] 2026-03-03 12:47:23,733 | INFO     | --------------------------------------------------
[2026-03-03 13:53:49] 2026-03-03 12:47:23,733 | INFO     | PanDA job id: 7035989633
[2026-03-03 13:53:49] 2026-03-03 12:47:23,733 | INFO     | task id: 48847917
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | errors: (none)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | pilot state: finished 
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | transexitcode: 0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | exeerrorcode: 0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | exeerrordiag: 
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | exitcode: 0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | exitmsg: OK
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | cpuconsumptiontime: 42800 s
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | nevents: 400
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | neventsw: 0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,734 | INFO     | pid: 925478
[2026-03-03 13:53:49] 2026-03-03 12:47:23,735 | INFO     | pgrp: 925478
[2026-03-03 13:53:49] 2026-03-03 12:47:23,735 | INFO     | corecount: 4
[2026-03-03 13:53:49] 2026-03-03 12:47:23,735 | INFO     | event service: False
[2026-03-03 13:53:49] 2026-03-03 12:47:23,735 | INFO     | sizes: {0: 2281973, 1: 2282434, 11: 2282434, 11598: 2311935, 11599: 2325810, 11600: 2325948}
[2026-03-03 13:53:49] 2026-03-03 12:47:23,735 | INFO     | --------------------------------------------------
[2026-03-03 13:53:49] 2026-03-03 12:47:23,735 | INFO     | 
[2026-03-03 13:53:49] 2026-03-03 12:47:23,735 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2026-03-03 13:53:49] 2026-03-03 12:47:23,762 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,763 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,763 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,763 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,764 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 13:53:49] 2026-03-03 12:47:23,765 | INFO     | job 7035989633 has completed (purged errors)
[2026-03-03 13:53:49] 2026-03-03 12:47:23,765 | INFO     | overall cleanup function is called
[2026-03-03 13:53:49] 2026-03-03 12:47:24,772 | INFO     | --- collectZombieJob: --- 10, [925478]
[2026-03-03 13:53:49] 2026-03-03 12:47:24,772 | INFO     | zombie collector waiting for pid 925478
[2026-03-03 13:53:49] 2026-03-03 12:47:24,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 13:53:49] 2026-03-03 12:47:24,773 | INFO     | collected zombie processes
[2026-03-03 13:53:49] 2026-03-03 12:47:24,773 | INFO     | will attempt to kill all subprocesses of pid=925478
[2026-03-03 13:53:49] 2026-03-03 12:47:25,135 | INFO     | process IDs to be killed: [925478] (in reverse order)
[2026-03-03 13:53:49] 2026-03-03 12:47:25,259 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 13:53:49] 2026-03-03 12:47:25,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 13:53:49] 2026-03-03 12:47:25,275 | INFO     | did not find any defunct processes belonging to 925478
[2026-03-03 13:53:49] 2026-03-03 12:47:25,286 | INFO     | did not find any defunct processes belonging to 925478
[2026-03-03 13:53:49] 2026-03-03 12:47:25,286 | INFO     | ready for new job
[2026-03-03 13:53:49] 2026-03-03 12:47:25,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 13:53:49] 2026-03-03 12:47:25,289 | INFO     | **************************************
[2026-03-03 13:53:49] 2026-03-03 12:47:25,289 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 13:53:49] 2026-03-03 12:47:25,289 | INFO     | **************************************
[2026-03-03 13:53:49] 2026-03-03 12:47:25,289 | INFO     | 
[2026-03-03 13:53:49] 2026-03-03 12:47:25,293 | INFO     | architecture information:
[2026-03-03 13:53:49] 2026-03-03 12:47:25,293 | INFO     | executing command: cat /etc/os-release
[2026-03-03 13:53:49] 2026-03-03 12:47:25,309 | INFO     | cat /etc/os-release:
[2026-03-03 13:53:49] NAME="CentOS Linux"
[2026-03-03 13:53:49] VERSION="7 (Core)"
[2026-03-03 13:53:49] ID="centos"
[2026-03-03 13:53:49] ID_LIKE="rhel fedora"
[2026-03-03 13:53:49] VERSION_ID="7"
[2026-03-03 13:53:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 13:53:49] ANSI_COLOR="0;31"
[2026-03-03 13:53:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 13:53:49] HOME_URL="https://www.centos.org/"
[2026-03-03 13:53:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 13:53:49] 
[2026-03-03 13:53:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 13:53:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 13:53:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 13:53:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 13:53:49] 
[2026-03-03 13:53:49] 2026-03-03 12:47:25,309 | INFO     | **************************************
[2026-03-03 13:53:49] 2026-03-03 12:47:25,812 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2026-03-03 13:53:49] 2026-03-03 12:47:25,832 | INFO     | sufficient remaining disk space (669719199744 B)
[2026-03-03 13:53:49] 2026-03-03 12:47:25,832 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 13:53:49] 2026-03-03 12:47:25,832 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 13:53:49] 2026-03-03 12:47:25,832 | INFO     | update_server=False
[2026-03-03 13:53:49] 2026-03-03 12:47:25,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 13:53:49] 2026-03-03 12:47:26,165 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 13:53:49] 2026-03-03 12:47:26,673 | INFO     | all data control threads have been joined
[2026-03-03 13:53:49] 2026-03-03 12:47:26,792 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 13:53:49] 2026-03-03 12:47:26,793 | INFO     | aborting loop
[2026-03-03 13:53:49] 2026-03-03 12:47:26,837 | INFO     | [job] retrieve thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,189 | INFO     | all job control threads have been joined
[2026-03-03 13:53:49] 2026-03-03 12:47:27,274 | INFO     | all payload control threads have been joined
[2026-03-03 13:53:49] 2026-03-03 12:47:27,317 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,343 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,402 | INFO     | [payload] failed_post thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,452 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,679 | INFO     | [data] control thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,752 | INFO     | [payload] validate_post thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,797 | INFO     | [job] job monitor thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,914 | INFO     | [job] validate thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:27,964 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:28,056 | INFO     | [data] copytool_in thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:28,171 | INFO     | [data] copytool_out thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:28,194 | INFO     | [job] control thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:28,279 | INFO     | [payload] control thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:28,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 13:53:49] 2026-03-03 12:47:29,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 13:53:49] 2026-03-03 12:47:29,747 | INFO     | [job] queue monitor thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:33,258 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 13:53:49] 2026-03-03 12:47:55,686 | INFO     | PID=910494 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-03 13:53:49] 2026-03-03 12:47:55,686 | INFO     | .. there are 12 such processes running
[2026-03-03 13:53:49] 2026-03-03 12:47:55,687 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 13:53:49] 2026-03-03 12:47:55,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 13:53:49] 2026-03-03 12:47:55,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 13:53:49] 2026-03-03 12:48:12,433 | INFO     | [monitor] cgroup control has ended
[2026-03-03 13:53:49] 2026-03-03 12:48:13,179 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23406581417792)>', '<ExcThread(monitor, started 23406333650688)>']
[2026-03-03 13:53:49] 2026-03-03 12:48:13,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 13:53:49] 2026-03-03 12:48:13,771 | INFO     | [monitor] control thread has ended
[2026-03-03 13:53:49] 2026-03-03 12:48:18,205 | INFO     | all workflow threads have been joined
[2026-03-03 13:53:49] 2026-03-03 12:48:18,205 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 13:53:49] 2026-03-03 12:48:18,206 | INFO     | traces error code: 0
[2026-03-03 13:53:49] 2026-03-03 12:48:18,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 13:53:49] 2026-03-03 12:48:18,364 [wrapper] ==== pilot stdout END ====
[2026-03-03 13:53:49] 2026-03-03 12:48:18,367 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 13:53:49] 2026-03-03 12:48:18,370 [wrapper] pilotpid: 910494
[2026-03-03 13:53:49] 2026-03-03 12:48:18,374 [wrapper] Pilot exit status: 0
[2026-03-03 13:53:49] 2026-03-03 12:48:18,390 [wrapper] pandaids: 7035989633
[2026-03-03 13:53:49] 2026-03-03 12:48:18,468 [wrapper] cleanup supervisor_pilot 1070574 910496
[2026-03-03 13:53:49] 2026-03-03 12:48:18,471 [wrapper] Test setup, not cleaning
[2026-03-03 13:53:49] 2026-03-03 12:48:18,474 [wrapper] apfmon messages muted
[2026-03-03 13:53:49] 2026-03-03 12:48:18,476 [wrapper] ==== wrapper stdout END ====
[2026-03-03 13:53:49] 2026-03-03 12:48:18,480 [wrapper] ==== wrapper stderr END ====
[2026-03-03 13:53:49]  *** Error codes and diagnostics ***
[2026-03-03 13:53:49]     "exeErrorCode": 0,
[2026-03-03 13:53:49]     "exeErrorDiag": "",
[2026-03-03 13:53:49]     "pilotErrorCode": 0,
[2026-03-03 13:53:49]     "pilotErrorDiag": "",
[2026-03-03 13:53:49]  *** Listing of results directory ***
[2026-03-03 13:53:49] total 464216
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc    584627 Mar  2 13:41 pilot3.tar.gz
[2026-03-03 13:53:49] -rwx------ 1 boinc boinc     36322 Mar  2 13:45 runpilot2-wrapper.sh
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc      5111 Mar  2 13:46 queuedata.json
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc       100 Mar  3 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 13:53:49] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 10:33 run_atlas
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc       105 Mar  3 10:33 job.xml
[2026-03-03 13:53:49] -rw-r--r-- 2 boinc boinc 277285452 Mar  3 10:33 EVNT.48454778._000003.pool.root.1
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc      6639 Mar  3 10:33 init_data.xml
[2026-03-03 13:53:49] -rw-r--r-- 2 boinc boinc     15845 Mar  3 10:33 start_atlas.sh
[2026-03-03 13:53:49] drwxrwx--x 2 boinc boinc      4096 Mar  3 10:33 shared
[2026-03-03 13:53:49] -rw-r--r-- 2 boinc boinc    597986 Mar  3 10:33 input.tar.gz
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc         0 Mar  3 10:33 boinc_lockfile
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc      2671 Mar  3 10:33 pandaJob.out
[2026-03-03 13:53:49] -rw------- 1 boinc boinc    998412 Mar  3 10:33 agis_schedconf.cvmfs.json
[2026-03-03 13:53:49] -rw------- 1 boinc boinc       452 Mar  3 10:33 workernode_map.json
[2026-03-03 13:53:49] drwx------ 5 boinc boinc      4096 Mar  3 10:33 pilot3
[2026-03-03 13:53:49] -rw------- 1 boinc boinc 190096256 Mar  3 13:46 HITS.48847917._000075.pool.root.1
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc       528 Mar  3 13:47 boinc_task_state.xml
[2026-03-03 13:53:49] -rw------- 1 boinc boinc      1033 Mar  3 13:47 memory_monitor_summary.json
[2026-03-03 13:53:49] -rw------- 1 boinc boinc   1516104 Mar  3 13:47 agis_ddmendpoints.agis.ALL.json
[2026-03-03 13:53:49] -rw------- 1 boinc boinc    383104 Mar  3 13:47 log.48847917._000075.job.log.tgz.1
[2026-03-03 13:53:49] -rw------- 1 boinc boinc      6395 Mar  3 13:47 heartbeat.json
[2026-03-03 13:53:49] -rw------- 1 boinc boinc        95 Mar  3 13:47 pilot_heartbeat.json
[2026-03-03 13:53:49] -rw------- 1 boinc boinc      4829 Mar  3 13:48 pilotlog.txt
[2026-03-03 13:53:49] -rw------- 1 boinc boinc   1636071 Mar  3 13:48 log.48847917._000075.job.log.1
[2026-03-03 13:53:49] -rw------- 1 boinc boinc       357 Mar  3 13:48 output.list
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc       620 Mar  3 13:48 runtime_log
[2026-03-03 13:53:49] -rw------- 1 boinc boinc   2037760 Mar  3 13:48 result.tar.gz
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc      9205 Mar  3 13:48 runtime_log.err
[2026-03-03 13:53:49] -rw------- 1 boinc boinc       665 Mar  3 13:48 YmiLDm2pHH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmqSBLDmoFGTim.diag
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc        26 Mar  3 13:53 wrapper_checkpoint.txt
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc      8192 Mar  3 13:53 boinc_mmap_file
[2026-03-03 13:53:49] -rw-r--r-- 1 boinc boinc     21135 Mar  3 13:53 stderr.txt
[2026-03-03 13:53:49] HITS file was successfully produced:
[2026-03-03 13:53:49] -rw------- 1 boinc boinc 190096256 Mar  3 13:46 shared/HITS.pool.root.1
[2026-03-03 13:53:49]  *** Contents of shared directory: ***
[2026-03-03 13:53:49] total 459032
[2026-03-03 13:53:49] -rw-r--r-- 2 boinc boinc 277285452 Mar  3 10:33 ATLAS.root_0
[2026-03-03 13:53:49] -rw-r--r-- 2 boinc boinc     15845 Mar  3 10:33 start_atlas.sh
[2026-03-03 13:53:49] -rw-r--r-- 2 boinc boinc    597986 Mar  3 10:33 input.tar.gz
[2026-03-03 13:53:49] -rw------- 1 boinc boinc 190096256 Mar  3 13:46 HITS.pool.root.1
[2026-03-03 13:53:49] -rw------- 1 boinc boinc   2037760 Mar  3 13:48 result.tar.gz
13:53:51 (900065): run_atlas exited; CPU time 43256.095399
13:53:51 (900065): called boinc_finish(0)

</stderr_txt>
]]>

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