Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:49:19 (3281220): wrapper (7.7.26015): starting
12:49:19 (3281220): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 12:49:19] Arguments: --nthreads 4
[2026-03-03 12:49:19] Threads: 4
[2026-03-03 12:49:19] Checking for CVMFS
[2026-03-03 12:49:19] No cvmfs_config command found, will try listing directly
[2026-03-03 12:49:19] CVMFS is ok
[2026-03-03 12:49:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 12:49:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 12:49:19] Further information can be found at the LHC@home message board.
[2026-03-03 12:49:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 12:49:19] Checking for apptainer binary...
[2026-03-03 12:49:19] which: no apptainer in ((null))
[2026-03-03 12:49:19] apptainer is not installed, using version from CVMFS
[2026-03-03 12:49:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 12:49:19] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-03 12:49:19] apptainer works
[2026-03-03 12:49:19] Set ATHENA_PROC_NUMBER=4
[2026-03-03 12:49:19] Set ATHENA_CORE_NUMBER=4
[2026-03-03 12:49:19] Starting ATLAS job with PandaID=7035989386
[2026-03-03 12:49:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:44:29 (561424): wrapper (7.7.26015): starting
15:44:29 (561424): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 15:44:29] Arguments: --nthreads 4
[2026-03-03 15:44:29] Threads: 4
[2026-03-03 15:44:29] This job has been restarted, cleaning up previous attempt
[2026-03-03 15:44:29] Checking for CVMFS
[2026-03-03 15:44:29] No cvmfs_config command found, will try listing directly
[2026-03-03 15:44:29] CVMFS is ok
[2026-03-03 15:44:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 15:44:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 15:44:29] Further information can be found at the LHC@home message board.
[2026-03-03 15:44:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 15:44:29] Checking for apptainer binary...
[2026-03-03 15:44:29] which: no apptainer in ((null))
[2026-03-03 15:44:29] apptainer is not installed, using version from CVMFS
[2026-03-03 15:44:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 15:44:29] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-03 15:44:29] apptainer works
[2026-03-03 15:44:29] Set ATHENA_PROC_NUMBER=4
[2026-03-03 15:44:29] Set ATHENA_CORE_NUMBER=4
[2026-03-03 15:44:29] Starting ATLAS job with PandaID=7035989386
[2026-03-03 15:44:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 19:36:13]  *** The last 200 lines of the pilot log: ***
[2026-03-03 19:36:13] 2026-03-03 18:35:38,743 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 19:36:13] 2026-03-03 18:35:38,743 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 19:36:13] 2026-03-03 18:35:38,743 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 19:36:13] 2026-03-03 18:35:38,743 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 19:36:13] 2026-03-03 18:35:38,746 | INFO     | fitting pss+swap vs Time
[2026-03-03 19:36:13] 2026-03-03 18:35:38,746 | INFO     | sum of square deviations: 3627000098.0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,747 | INFO     | sum of deviations: 14679139368.999996
[2026-03-03 19:36:13] 2026-03-03 18:35:38,747 | INFO     | mean x: 1772556021.0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,747 | INFO     | mean y: 2322015.462555066
[2026-03-03 19:36:13] 2026-03-03 18:35:38,747 | INFO     | intersect: -7171539624.620336
[2026-03-03 19:36:13] 2026-03-03 18:35:38,747 | INFO     | chi2: 1.8800857883640507
[2026-03-03 19:36:13] 2026-03-03 18:35:38,747 | INFO     | sum of square deviations: 3392567795.5
[2026-03-03 19:36:13] 2026-03-03 18:35:38,748 | INFO     | sum of deviations: 28644562085.000004
[2026-03-03 19:36:13] 2026-03-03 18:35:38,748 | INFO     | mean x: 1772555868.5
[2026-03-03 19:36:13] 2026-03-03 18:35:38,748 | INFO     | mean y: 2330932.153153153
[2026-03-03 19:36:13] 2026-03-03 18:35:38,748 | INFO     | intersect: -14963939363.676327
[2026-03-03 19:36:13] 2026-03-03 18:35:38,748 | INFO     | chi2: 1.0594741509792067
[2026-03-03 19:36:13] 2026-03-03 18:35:38,748 | INFO     | current chi2=1.0594741509792067 (change=43.64756344969216 %)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,748 | INFO     | sum of square deviations: 3168461268.0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,749 | INFO     | sum of deviations: 27901945949.999996
[2026-03-03 19:36:13] 2026-03-03 18:35:38,749 | INFO     | mean x: 1772555716.0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,749 | INFO     | mean y: 2330426.7373271887
[2026-03-03 19:36:13] 2026-03-03 18:35:38,749 | INFO     | intersect: -15607061513.980423
[2026-03-03 19:36:13] 2026-03-03 18:35:38,749 | INFO     | chi2: 1.0597166608697055
[2026-03-03 19:36:13] 2026-03-03 18:35:38,749 | INFO     | current chi2=1.0597166608697055 (change=-0.0228896467435898 %)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,750 | INFO     | right removable region: 216
[2026-03-03 19:36:13] 2026-03-03 18:35:38,750 | INFO     | sum of square deviations: 3392567795.5
[2026-03-03 19:36:13] 2026-03-03 18:35:38,750 | INFO     | sum of deviations: -6602879394.5
[2026-03-03 19:36:13] 2026-03-03 18:35:38,750 | INFO     | mean x: 1772556173.5
[2026-03-03 19:36:13] 2026-03-03 18:35:38,750 | INFO     | mean y: 2335667.3198198196
[2026-03-03 19:36:13] 2026-03-03 18:35:38,750 | INFO     | intersect: 3452222401.8226376
[2026-03-03 19:36:13] 2026-03-03 18:35:38,751 | INFO     | chi2: 0.8371774314307164
[2026-03-03 19:36:13] 2026-03-03 18:35:38,751 | INFO     | current chi2=0.8371774314307164 (change=55.47131749986881 %)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,751 | INFO     | sum of square deviations: 3168461268.0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,752 | INFO     | sum of deviations: -7935663118.0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,752 | INFO     | mean x: 1772556326.0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,752 | INFO     | mean y: 2336573.33640553
[2026-03-03 19:36:13] 2026-03-03 18:35:38,752 | INFO     | intersect: 4441844798.631771
[2026-03-03 19:36:13] 2026-03-03 18:35:38,752 | INFO     | chi2: 0.8361729541413554
[2026-03-03 19:36:13] 2026-03-03 18:35:38,752 | INFO     | current chi2=0.8361729541413554 (change=0.11998379932966072 %)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,752 | INFO     | left removable region: 20
[2026-03-03 19:36:13] 2026-03-03 18:35:38,752 | INFO     | sum of square deviations: 2334722845.0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | sum of deviations: 3946263819.4999995
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | mean x: 1772556295.5
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | mean y: 2347434.647959184
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | intersect: -2993714728.33593
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | chi2: 0.0003439175772586232
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | current memory leak: 1.69 B/s (using 196 data points, chi2=0.00)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | could have reported an average CPU frequency of 3625 MHz (11 samples)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | ..............................
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | . Timing measurements:
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | . get job = 0 s
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | . initial setup = 0 s
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | . payload setup = 16 s
[2026-03-03 19:36:13] 2026-03-03 18:35:38,753 | INFO     | . stage-in = 0 s
[2026-03-03 19:36:13] 2026-03-03 18:35:38,754 | INFO     | . payload execution = 13821 s
[2026-03-03 19:36:13] 2026-03-03 18:35:38,754 | INFO     | . stage-out = 0 s
[2026-03-03 19:36:13] 2026-03-03 18:35:38,754 | INFO     | . log creation = 0 s
[2026-03-03 19:36:13] 2026-03-03 18:35:38,754 | INFO     | ..............................
[2026-03-03 19:36:13] 2026-03-03 18:35:38,801 | INFO     | 
[2026-03-03 19:36:13] 2026-03-03 18:35:38,801 | INFO     | job summary report
[2026-03-03 19:36:13] 2026-03-03 18:35:38,801 | INFO     | --------------------------------------------------
[2026-03-03 19:36:13] 2026-03-03 18:35:38,801 | INFO     | PanDA job id: 7035989386
[2026-03-03 19:36:13] 2026-03-03 18:35:38,801 | INFO     | task id: 48847806
[2026-03-03 19:36:13] 2026-03-03 18:35:38,801 | INFO     | errors: (none)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | pilot state: finished 
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | transexitcode: 0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | exeerrorcode: 0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | exeerrordiag: 
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | exitcode: 0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | exitmsg: OK
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | cpuconsumptiontime: 52330 s
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | nevents: 400
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | neventsw: 0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | pid: 1111504
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | pgrp: 1111504
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | corecount: 4
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | event service: False
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | sizes: {0: 2286049, 1: 2287179, 11: 2287179, 13841: 2317912, 13842: 2326934, 13843: 2326990, 13844: 2327312}
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | --------------------------------------------------
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | 
[2026-03-03 19:36:13] 2026-03-03 18:35:38,802 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot124/slots/0
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,819 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 19:36:13] 2026-03-03 18:35:38,819 | INFO     | job 7035989386 has completed (purged errors)
[2026-03-03 19:36:13] 2026-03-03 18:35:38,819 | INFO     | overall cleanup function is called
[2026-03-03 19:36:13] 2026-03-03 18:35:39,826 | INFO     | --- collectZombieJob: --- 10, [1111504]
[2026-03-03 19:36:13] 2026-03-03 18:35:39,826 | INFO     | zombie collector waiting for pid 1111504
[2026-03-03 19:36:13] 2026-03-03 18:35:39,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 19:36:13] 2026-03-03 18:35:39,826 | INFO     | collected zombie processes
[2026-03-03 19:36:13] 2026-03-03 18:35:39,826 | INFO     | will attempt to kill all subprocesses of pid=1111504
[2026-03-03 19:36:13] 2026-03-03 18:35:40,268 | INFO     | process IDs to be killed: [1111504] (in reverse order)
[2026-03-03 19:36:13] 2026-03-03 18:35:40,462 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 19:36:13] 2026-03-03 18:35:40,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 19:36:13] 2026-03-03 18:35:40,489 | INFO     | did not find any defunct processes belonging to 1111504
[2026-03-03 19:36:13] 2026-03-03 18:35:40,513 | INFO     | did not find any defunct processes belonging to 1111504
[2026-03-03 19:36:13] 2026-03-03 18:35:40,514 | INFO     | ready for new job
[2026-03-03 19:36:13] 2026-03-03 18:35:40,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 19:36:13] 2026-03-03 18:35:40,516 | INFO     | **************************************
[2026-03-03 19:36:13] 2026-03-03 18:35:40,516 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 19:36:13] 2026-03-03 18:35:40,516 | INFO     | **************************************
[2026-03-03 19:36:13] 2026-03-03 18:35:40,516 | INFO     | 
[2026-03-03 19:36:13] 2026-03-03 18:35:40,522 | INFO     | architecture information:
[2026-03-03 19:36:13] 2026-03-03 18:35:40,522 | INFO     | executing command: cat /etc/os-release
[2026-03-03 19:36:13] 2026-03-03 18:35:40,536 | INFO     | cat /etc/os-release:
[2026-03-03 19:36:13] NAME="CentOS Linux"
[2026-03-03 19:36:13] VERSION="7 (Core)"
[2026-03-03 19:36:13] ID="centos"
[2026-03-03 19:36:13] ID_LIKE="rhel fedora"
[2026-03-03 19:36:13] VERSION_ID="7"
[2026-03-03 19:36:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 19:36:13] ANSI_COLOR="0;31"
[2026-03-03 19:36:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 19:36:13] HOME_URL="https://www.centos.org/"
[2026-03-03 19:36:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 19:36:13] 
[2026-03-03 19:36:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 19:36:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 19:36:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 19:36:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 19:36:13] 
[2026-03-03 19:36:13] 2026-03-03 18:35:40,536 | INFO     | **************************************
[2026-03-03 19:36:13] 2026-03-03 18:35:41,038 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-03-03 19:36:13] 2026-03-03 18:35:41,050 | INFO     | sufficient remaining disk space (21312307200 B)
[2026-03-03 19:36:13] 2026-03-03 18:35:41,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 19:36:13] 2026-03-03 18:35:41,050 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 19:36:13] 2026-03-03 18:35:41,050 | INFO     | update_server=False
[2026-03-03 19:36:13] 2026-03-03 18:35:41,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 19:36:13] 2026-03-03 18:35:41,146 | INFO     | all data control threads have been joined
[2026-03-03 19:36:13] 2026-03-03 18:35:41,305 | WARNING  | process 1111504 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 19:36:13] 2026-03-03 18:35:41,605 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 19:36:13] 2026-03-03 18:35:41,799 | INFO     | job.realtimelogging is not enabled
[2026-03-03 19:36:13] 2026-03-03 18:35:41,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 19:36:13] 2026-03-03 18:35:42,033 | INFO     | number of running child processes to parent process 1111504: 1
[2026-03-03 19:36:13] 2026-03-03 18:35:42,033 | INFO     | maximum number of monitored processes: 6
[2026-03-03 19:36:13] 2026-03-03 18:35:42,033 | INFO     | aborting job monitoring since job object (job id=7035989386) has expired
[2026-03-03 19:36:13] 2026-03-03 18:35:42,033 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 19:36:13] 2026-03-03 18:35:42,033 | INFO     | will abort loop
[2026-03-03 19:36:13] 2026-03-03 18:35:42,053 | INFO     | [job] retrieve thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:42,151 | INFO     | [data] control thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:42,170 | INFO     | all job control threads have been joined
[2026-03-03 19:36:13] 2026-03-03 18:35:42,170 | INFO     | all payload control threads have been joined
[2026-03-03 19:36:13] 2026-03-03 18:35:42,284 | INFO     | [data] copytool_in thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:42,313 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:42,381 | INFO     | [job] validate thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:42,572 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:42,664 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:42,804 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:43,016 | INFO     | [payload] validate_post thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:43,038 | INFO     | [job] job monitor thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:43,175 | INFO     | [job] control thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:43,176 | INFO     | [payload] control thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:43,472 | INFO     | [payload] failed_post thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:43,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 19:36:13] 2026-03-03 18:35:43,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 19:36:13] 2026-03-03 18:35:43,941 | INFO     | [data] copytool_out thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:44,874 | INFO     | [job] queue monitor thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:35:47,756 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 19:36:13] 2026-03-03 18:36:06,469 | INFO     | [monitor] cgroup control has ended
[2026-03-03 19:36:13] 2026-03-03 18:36:07,921 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23363397224256)>', '<ExcThread(monitor, started 23363159594752)>']
[2026-03-03 19:36:13] 2026-03-03 18:36:10,469 | INFO     | PID=844262 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-03 19:36:13] 2026-03-03 18:36:10,469 | INFO     | .. there are 56 such processes running
[2026-03-03 19:36:13] 2026-03-03 18:36:10,470 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 19:36:13] 2026-03-03 18:36:10,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 19:36:13] 2026-03-03 18:36:10,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 19:36:13] 2026-03-03 18:36:10,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 19:36:13] 2026-03-03 18:36:10,470 | INFO     | [monitor] control thread has ended
[2026-03-03 19:36:13] 2026-03-03 18:36:12,946 | INFO     | all workflow threads have been joined
[2026-03-03 19:36:13] 2026-03-03 18:36:12,946 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 19:36:13] 2026-03-03 18:36:12,946 | INFO     | traces error code: 0
[2026-03-03 19:36:13] 2026-03-03 18:36:12,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 19:36:13] 2026-03-03 18:36:13,113 [wrapper] ==== pilot stdout END ====
[2026-03-03 19:36:13] 2026-03-03 18:36:13,115 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 19:36:13] 2026-03-03 18:36:13,118 [wrapper] pilotpid: 844262
[2026-03-03 19:36:13] 2026-03-03 18:36:13,120 [wrapper] Pilot exit status: 0
[2026-03-03 19:36:13] 2026-03-03 18:36:13,130 [wrapper] pandaids: 7035989386 7035989386
[2026-03-03 19:36:13] 2026-03-03 18:36:13,244 [wrapper] cleanup supervisor_pilot 3025554 844264
[2026-03-03 19:36:13] 2026-03-03 18:36:13,246 [wrapper] Test setup, not cleaning
[2026-03-03 19:36:13] 2026-03-03 18:36:13,249 [wrapper] apfmon messages muted
[2026-03-03 19:36:13] 2026-03-03 18:36:13,251 [wrapper] ==== wrapper stdout END ====
[2026-03-03 19:36:13] 2026-03-03 18:36:13,252 [wrapper] ==== wrapper stderr END ====
[2026-03-03 19:36:13]  *** Error codes and diagnostics ***
[2026-03-03 19:36:13]     "exeErrorCode": 0,
[2026-03-03 19:36:13]     "exeErrorDiag": "",
[2026-03-03 19:36:13]     "pilotErrorCode": 0,
[2026-03-03 19:36:13]     "pilotErrorDiag": "",
[2026-03-03 19:36:13]  *** Listing of results directory ***
[2026-03-03 19:36:13] total 767956
[2026-03-03 19:36:13] drwx------. 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc    584627 Mar  2 13:41 pilot3.tar.gz
[2026-03-03 19:36:13] -rwx------. 1 boinc boinc     36322 Mar  2 13:45 runpilot2-wrapper.sh
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc      5111 Mar  2 13:46 queuedata.json
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc       100 Mar  3 12:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 19:36:13] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 12:49 run_atlas
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc       105 Mar  3 12:49 job.xml
[2026-03-03 19:36:13] -rw-r--r--. 3 boinc boinc 256957235 Mar  3 12:49 EVNT.48454523._000001.pool.root.1
[2026-03-03 19:36:13] -rw-r--r--. 3 boinc boinc 256957235 Mar  3 12:49 ATLAS.root_0
[2026-03-03 19:36:13] -rw-r--r--. 2 boinc boinc     15845 Mar  3 12:49 start_atlas.sh
[2026-03-03 19:36:13] drwxrwx--x. 2 boinc boinc      4096 Mar  3 12:49 shared
[2026-03-03 19:36:13] -rw-r--r--. 2 boinc boinc    597960 Mar  3 12:49 input.tar.gz
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc         0 Mar  3 12:49 boinc_lockfile
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc      2619 Mar  3 15:44 pandaJob.out
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc    998442 Mar  3 15:44 agis_schedconf.cvmfs.json
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc       445 Mar  3 15:44 workernode_map.json
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc      6716 Mar  3 18:50 init_data.xml
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc       531 Mar  3 19:35 boinc_task_state.xml
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc 263878526 Mar  3 19:35 HITS.48847806._000003.pool.root.1
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc      1034 Mar  3 19:35 memory_monitor_summary.json
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc   1516092 Mar  3 19:35 agis_ddmendpoints.agis.ALL.json
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc    387454 Mar  3 19:35 log.48847806._000003.job.log.tgz.1
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc      6345 Mar  3 19:35 heartbeat.json
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc      8192 Mar  3 19:36 boinc_mmap_file
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc        28 Mar  3 19:36 wrapper_checkpoint.txt
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc        96 Mar  3 19:36 pilot_heartbeat.json
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc      5434 Mar  3 19:36 pilotlog.txt
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc   1938801 Mar  3 19:36 log.48847806._000003.job.log.1
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc       357 Mar  3 19:36 output.list
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc       620 Mar  3 19:36 runtime_log
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc   2344960 Mar  3 19:36 result.tar.gz
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc      9299 Mar  3 19:36 runtime_log.err
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc       790 Mar  3 19:36 TxJMDmFpHH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmeTDLDmNNDBhm.diag
[2026-03-03 19:36:13] -rw-r--r--. 1 boinc boinc     22787 Mar  3 19:36 stderr.txt
[2026-03-03 19:36:13] HITS file was successfully produced:
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc 263878526 Mar  3 19:35 shared/HITS.pool.root.1
[2026-03-03 19:36:13]  *** Contents of shared directory: ***
[2026-03-03 19:36:13] total 511532
[2026-03-03 19:36:13] -rw-r--r--. 3 boinc boinc 256957235 Mar  3 12:49 ATLAS.root_0
[2026-03-03 19:36:13] -rw-r--r--. 2 boinc boinc     15845 Mar  3 12:49 start_atlas.sh
[2026-03-03 19:36:13] -rw-r--r--. 2 boinc boinc    597960 Mar  3 12:49 input.tar.gz
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc 263878526 Mar  3 19:35 HITS.pool.root.1
[2026-03-03 19:36:13] -rw-------. 1 boinc boinc   2344960 Mar  3 19:36 result.tar.gz
19:36:14 (561424): run_atlas exited; CPU time 52941.042135
19:36:14 (561424): called boinc_finish(0)

</stderr_txt>
]]>

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