Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:44:03 (1248925): wrapper (7.7.26015): starting
06:44:03 (1248925): wrapper: running run_atlas (--nthreads 3)
[2026-03-03 06:44:03] Arguments: --nthreads 3
[2026-03-03 06:44:03] Threads: 3
[2026-03-03 06:44:03] Checking for CVMFS
[2026-03-03 06:44:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 06:44:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 06:44:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 06:44:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 06:44:04] 2.9.2.0 310932 8159 67772 156834 2 50 29560534 36864001 0 130560 0 2600873 99.978 310700 13956 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 06:44:04] CVMFS is ok
[2026-03-03 06:44:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 06:44:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 06:44:05] Further information can be found at the LHC@home message board.
[2026-03-03 06:44:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 06:44:05] Checking for apptainer binary...
[2026-03-03 06:44:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 06:44:05] Running /usr/bin/apptainer --version
[2026-03-03 06:44:05] apptainer version 1.4.1-1.1
[2026-03-03 06:44:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 06:44:05] atlasA223a
[2026-03-03 06:44:05] apptainer works
[2026-03-03 06:44:05] Set ATHENA_PROC_NUMBER=3
[2026-03-03 06:44:05] Set ATHENA_CORE_NUMBER=3
[2026-03-03 06:44:05] Starting ATLAS job with PandaID=7035911978
[2026-03-03 06:44:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 09:43:47]  *** The last 200 lines of the pilot log: ***
[2026-03-03 09:43:47] 2026-03-03 08:42:46,092 | INFO     | --- collectZombieJob: --- 10, [1257403]
[2026-03-03 09:43:47] 2026-03-03 08:42:46,094 | INFO     | zombie collector waiting for pid 1257403
[2026-03-03 09:43:47] 2026-03-03 08:42:46,094 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 09:43:47] 2026-03-03 08:42:46,095 | INFO     | collected zombie processes
[2026-03-03 09:43:47] 2026-03-03 08:42:46,095 | INFO     | will attempt to kill all subprocesses of pid=1257403
[2026-03-03 09:43:47] 2026-03-03 08:42:46,133 | INFO     | process IDs to be killed: [1257403] (in reverse order)
[2026-03-03 09:43:47] 2026-03-03 08:42:46,158 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 09:43:47] 2026-03-03 08:42:46,158 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 09:43:47] 2026-03-03 08:42:46,159 | INFO     | did not find any defunct processes belonging to 1257403
[2026-03-03 09:43:47] 2026-03-03 08:42:46,160 | INFO     | did not find any defunct processes belonging to 1257403
[2026-03-03 09:43:47] 2026-03-03 08:42:46,160 | INFO     | ready for new job
[2026-03-03 09:43:47] 2026-03-03 08:42:46,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 09:43:47] 2026-03-03 08:42:46,161 | INFO     | **************************************
[2026-03-03 09:43:47] 2026-03-03 08:42:46,161 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 09:43:47] 2026-03-03 08:42:46,161 | INFO     | **************************************
[2026-03-03 09:43:47] 2026-03-03 08:42:46,161 | INFO     | 
[2026-03-03 09:43:47] 2026-03-03 08:42:46,162 | INFO     | architecture information:
[2026-03-03 09:43:47] 2026-03-03 08:42:46,162 | INFO     | executing command: cat /etc/os-release
[2026-03-03 09:43:47] 2026-03-03 08:42:46,172 | INFO     | cat /etc/os-release:
[2026-03-03 09:43:47] NAME="CentOS Linux"
[2026-03-03 09:43:47] VERSION="7 (Core)"
[2026-03-03 09:43:47] ID="centos"
[2026-03-03 09:43:47] ID_LIKE="rhel fedora"
[2026-03-03 09:43:47] VERSION_ID="7"
[2026-03-03 09:43:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 09:43:47] ANSI_COLOR="0;31"
[2026-03-03 09:43:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 09:43:47] HOME_URL="https://www.centos.org/"
[2026-03-03 09:43:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 09:43:47] 
[2026-03-03 09:43:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 09:43:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 09:43:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 09:43:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 09:43:47] 
[2026-03-03 09:43:47] 2026-03-03 08:42:46,172 | INFO     | **************************************
[2026-03-03 09:43:47] 2026-03-03 08:42:46,675 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-03 09:43:47] 2026-03-03 08:42:46,689 | INFO     | sufficient remaining disk space (330064461824 B)
[2026-03-03 09:43:47] 2026-03-03 08:42:46,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 09:43:47] 2026-03-03 08:42:46,689 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 09:43:47] 2026-03-03 08:42:46,689 | INFO     | update_server=False
[2026-03-03 09:43:47] 2026-03-03 08:42:46,689 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 09:43:47] 2026-03-03 08:42:46,689 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 09:43:47] 2026-03-03 08:42:46,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 09:43:47] 2026-03-03 08:42:46,915 | INFO     | all data control threads have been joined
[2026-03-03 09:43:47] 2026-03-03 08:42:46,994 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-03 09:43:47] 2026-03-03 08:42:46,994 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-03 09:43:47] 2026-03-03 08:42:46,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 09:43:47] 2026-03-03 08:42:46,995 | INFO     | will abort loop
[2026-03-03 09:43:47] 2026-03-03 08:42:47,252 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 09:43:47] 2026-03-03 08:42:47,695 | INFO     | [job] retrieve thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:47,696 | INFO     | [job] queue monitor thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:47,709 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:47,732 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:47,755 | INFO     | [data] copytool_in thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:47,887 | INFO     | all job control threads have been joined
[2026-03-03 09:43:47] 2026-03-03 08:42:47,917 | INFO     | [data] control thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:47,957 | INFO     | [payload] validate_post thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:48,000 | INFO     | [job] job monitor thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:48,009 | INFO     | all payload control threads have been joined
[2026-03-03 09:43:47] 2026-03-03 08:42:48,069 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:48,659 | INFO     | [payload] failed_post thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:48,859 | INFO     | [job] validate thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:48,893 | INFO     | [job] control thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:49,015 | INFO     | [payload] control thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:49,030 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:49,258 | INFO     | [data] copytool_out thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:42:50,696 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 09:43:47] 2026-03-03 08:43:16,460 | INFO     | PID=1252976 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 09:43:47] 2026-03-03 08:43:16,461 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 09:43:47] 2026-03-03 08:43:16,461 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 09:43:47] 2026-03-03 08:43:16,461 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 09:43:47] 2026-03-03 08:43:41,119 | INFO     | [monitor] cgroup control has ended
[2026-03-03 09:43:47] 2026-03-03 08:43:42,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140674542511936)>', '<ExcThread(monitor, started 140674045298432)>']
[2026-03-03 09:43:47] 2026-03-03 08:43:42,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 09:43:47] 2026-03-03 08:43:42,593 | INFO     | [monitor] control thread has ended
[2026-03-03 09:43:47] 2026-03-03 08:43:47,150 | INFO     | all workflow threads have been joined
[2026-03-03 09:43:47] 2026-03-03 08:43:47,150 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 09:43:47] 2026-03-03 08:43:47,151 | INFO     | traces error code: 0
[2026-03-03 09:43:47] 2026-03-03 08:43:47,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 09:43:47] 2026-03-03 08:43:47,200 [wrapper] ==== pilot stdout END ====
[2026-03-03 09:43:47] 2026-03-03 08:43:47,203 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 09:43:47] 2026-03-03 08:43:47,206 [wrapper] pilotpid: 1252976
[2026-03-03 09:43:47] 2026-03-03 08:43:47,209 [wrapper] Pilot exit status: 0
[2026-03-03 09:43:47] 2026-03-03 08:43:47,217 [wrapper] pandaids: 7035911978
[2026-03-03 09:43:47] 2026-03-03 08:43:47,234 [wrapper] cleanup supervisor_pilot 1263710 1252977
[2026-03-03 09:43:47] 2026-03-03 08:43:47,237 [wrapper] Test setup, not cleaning
[2026-03-03 09:43:47] 2026-03-03 08:43:47,239 [wrapper] apfmon messages muted
[2026-03-03 09:43:47] 2026-03-03 08:43:47,242 [wrapper] ==== wrapper stdout END ====
[2026-03-03 09:43:47] 2026-03-03 08:43:47,244 [wrapper] ==== wrapper stderr END ====
[2026-03-03 09:43:47]  *** Error codes and diagnostics ***
[2026-03-03 09:43:47]     "exeErrorCode": 0,
[2026-03-03 09:43:47]     "exeErrorDiag": "",
[2026-03-03 09:43:47]     "pilotErrorCode": 0,
[2026-03-03 09:43:47]     "pilotErrorDiag": "",
[2026-03-03 09:43:47]  *** Listing of results directory ***
[2026-03-03 09:43:47] total 474228
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc    584627 Mar  2 10:36 pilot3.tar.gz
[2026-03-03 09:43:47] -rwx------ 1 boinc boinc     36322 Mar  2 10:40 runpilot2-wrapper.sh
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc      5111 Mar  2 10:40 queuedata.json
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc       100 Mar  3 06:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 09:43:47] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 06:44 run_atlas
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc       105 Mar  3 06:44 job.xml
[2026-03-03 09:43:47] -rw-r--r-- 2 boinc boinc 244339466 Mar  3 06:44 EVNT.48454616._000003.pool.root.1
[2026-03-03 09:43:47] -rw-r--r-- 2 boinc boinc    597970 Mar  3 06:44 input.tar.gz
[2026-03-03 09:43:47] -rw-r--r-- 2 boinc boinc     15845 Mar  3 06:44 start_atlas.sh
[2026-03-03 09:43:47] drwxrwx--x 2 boinc boinc      4096 Mar  3 06:44 shared
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc         0 Mar  3 06:44 boinc_setup_complete
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc      6199 Mar  3 06:44 init_data.xml
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc         0 Mar  3 06:44 boinc_lockfile
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc      2626 Mar  3 06:44 pandaJob.out
[2026-03-03 09:43:47] -rw------- 1 boinc boinc    997730 Mar  3 06:44 agis_schedconf.cvmfs.json
[2026-03-03 09:43:47] -rw------- 1 boinc boinc   1512931 Mar  3 06:44 agis_ddmendpoints.agis.ALL.json
[2026-03-03 09:43:47] -rw------- 1 boinc boinc       421 Mar  3 06:44 workernode_map.json
[2026-03-03 09:43:47] drwx------ 5 boinc boinc      4096 Mar  3 06:44 pilot3
[2026-03-03 09:43:47] -rw------- 1 boinc boinc 233665559 Mar  3 09:42 HITS.48844912._000060.pool.root.1
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc       530 Mar  3 09:42 boinc_task_state.xml
[2026-03-03 09:43:47] -rw------- 1 boinc boinc      1021 Mar  3 09:42 memory_monitor_summary.json
[2026-03-03 09:43:47] -rw------- 1 boinc boinc    331574 Mar  3 09:42 log.48844912._000060.job.log.tgz.1
[2026-03-03 09:43:47] -rw------- 1 boinc boinc      6302 Mar  3 09:42 heartbeat.json
[2026-03-03 09:43:47] -rw------- 1 boinc boinc        95 Mar  3 09:43 pilot_heartbeat.json
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc      8192 Mar  3 09:43 boinc_mmap_file
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc        28 Mar  3 09:43 wrapper_checkpoint.txt
[2026-03-03 09:43:47] -rw------- 1 boinc boinc      4934 Mar  3 09:43 pilotlog.txt
[2026-03-03 09:43:47] -rw------- 1 boinc boinc   1515468 Mar  3 09:43 log.48844912._000060.job.log.1
[2026-03-03 09:43:47] -rw------- 1 boinc boinc       357 Mar  3 09:43 output.list
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc       620 Mar  3 09:43 runtime_log
[2026-03-03 09:43:47] -rw------- 1 boinc boinc   1863680 Mar  3 09:43 result.tar.gz
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc      8917 Mar  3 09:43 runtime_log.err
[2026-03-03 09:43:47] -rw------- 1 boinc boinc       663 Mar  3 09:43 WGkMDmXwEH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmN9ALDmBI3H9n.diag
[2026-03-03 09:43:47] -rw-r--r-- 1 boinc boinc     10844 Mar  3 09:43 stderr.txt
[2026-03-03 09:43:47] HITS file was successfully produced:
[2026-03-03 09:43:47] -rw------- 1 boinc boinc 233665559 Mar  3 09:42 shared/HITS.pool.root.1
[2026-03-03 09:43:47]  *** Contents of shared directory: ***
[2026-03-03 09:43:47] total 469232
[2026-03-03 09:43:47] -rw-r--r-- 2 boinc boinc 244339466 Mar  3 06:44 ATLAS.root_0
[2026-03-03 09:43:47] -rw-r--r-- 2 boinc boinc    597970 Mar  3 06:44 input.tar.gz
[2026-03-03 09:43:47] -rw-r--r-- 2 boinc boinc     15845 Mar  3 06:44 start_atlas.sh
[2026-03-03 09:43:47] -rw------- 1 boinc boinc 233665559 Mar  3 09:42 HITS.pool.root.1
[2026-03-03 09:43:47] -rw------- 1 boinc boinc   1863680 Mar  3 09:43 result.tar.gz
09:43:48 (1248925): run_atlas exited; CPU time 31282.823293
09:43:48 (1248925): called boinc_finish(0)

</stderr_txt>
]]>

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