Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:10:57 (3913168): wrapper (7.7.26015): starting
15:10:57 (3913168): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 15:10:57] Arguments: --nthreads 4
[2026-03-03 15:10:57] Threads: 4
[2026-03-03 15:10:57] Checking for CVMFS
[2026-03-03 15:10:57] No cvmfs_config command found, will try listing directly
[2026-03-03 15:10:57] CVMFS is ok
[2026-03-03 15:10:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 15:10:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 15:10:57] Further information can be found at the LHC@home message board.
[2026-03-03 15:10:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 15:10:57] Checking for apptainer binary...
[2026-03-03 15:10:57] which: no apptainer in ((null))
[2026-03-03 15:10:57] apptainer is not installed, using version from CVMFS
[2026-03-03 15:10:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 15:10:57] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-03 15:10:57] apptainer works
[2026-03-03 15:10:57] Set ATHENA_PROC_NUMBER=4
[2026-03-03 15:10:57] Set ATHENA_CORE_NUMBER=4
[2026-03-03 15:10:57] Starting ATLAS job with PandaID=7035985826
[2026-03-03 15:10:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:44:34 (71558): wrapper (7.7.26015): starting
15:44:34 (71558): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 15:44:34] Arguments: --nthreads 4
[2026-03-03 15:44:34] Threads: 4
[2026-03-03 15:44:34] This job has been restarted, cleaning up previous attempt
[2026-03-03 15:44:34] Checking for CVMFS
[2026-03-03 15:44:34] No cvmfs_config command found, will try listing directly
[2026-03-03 15:44:35] CVMFS is ok
[2026-03-03 15:44:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 15:44:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 15:44:35] Further information can be found at the LHC@home message board.
[2026-03-03 15:44:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 15:44:35] Checking for apptainer binary...
[2026-03-03 15:44:35] which: no apptainer in ((null))
[2026-03-03 15:44:35] apptainer is not installed, using version from CVMFS
[2026-03-03 15:44:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 15:44:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-03 15:44:36] apptainer works
[2026-03-03 15:44:36] Set ATHENA_PROC_NUMBER=4
[2026-03-03 15:44:36] Set ATHENA_CORE_NUMBER=4
[2026-03-03 15:44:36] Starting ATLAS job with PandaID=7035985826
[2026-03-03 15:44:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 17:00:13]  *** The last 200 lines of the pilot log: ***
[2026-03-03 17:00:13]  is_altstaged=None
[2026-03-03 17:00:13]  is_tar=False
[2026-03-03 17:00:13]  lfn=log.48700858._001862.job.log.tgz.1
[2026-03-03 17:00:13]  mtime=0
[2026-03-03 17:00:13]  protocol_id=None
[2026-03-03 17:00:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 17:00:13]  replicas=None
[2026-03-03 17:00:13]  scope=mc23_13p6TeV
[2026-03-03 17:00:13]  status=None
[2026-03-03 17:00:13]  status_code=0
[2026-03-03 17:00:13]  storage_token=
[2026-03-03 17:00:13]  surl=/var/lib/boinc/var/slot92/slots/0/PanDA_Pilot-7035985826/log.48700858._001862.job.log.tgz.1
[2026-03-03 17:00:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/c3/log.48700858._001862.job.log.tgz.1
[2026-03-03 17:00:13]  workdir=None
[2026-03-03 17:00:13] ]
[2026-03-03 17:00:13] 2026-03-03 15:59:39,553 | INFO     | transferring file log.48700858._001862.job.log.tgz.1 from /var/lib/boinc/var/slot92/slots/0/PanDA_Pilot-7035985826/log.48700858._001862.job.log.tgz.1 to /var/lib/b
[2026-03-03 17:00:13] 2026-03-03 15:59:39,553 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot92/slots/0/PanDA_Pilot-7035985826/log.48700858._001862.job.log.tgz.1 /var/lib/boinc/var/slot92/slots/0/lo
[2026-03-03 17:00:13] 2026-03-03 15:59:39,569 | INFO     | adding to output.list: log.48700858._001862.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/c3/log.48700858._001862.job.log.tg
[2026-03-03 17:00:13] 2026-03-03 15:59:39,569 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 17:00:13] 2026-03-03 15:59:39,570 | INFO     | summary of transferred files:
[2026-03-03 17:00:13] 2026-03-03 15:59:39,570 | INFO     |  -- lfn=log.48700858._001862.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 17:00:13] 2026-03-03 15:59:39,570 | INFO     | stage-out finished correctly
[2026-03-03 17:00:13] 2026-03-03 15:59:39,625 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 17:00:13] 2026-03-03 15:59:39,921 | INFO     | monitor loop #320: job 0:7035985826 is in state 'finished'
[2026-03-03 17:00:13] 2026-03-03 15:59:39,922 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,414 | INFO     | job 7035985826 has state=finished
[2026-03-03 17:00:13] 2026-03-03 15:59:40,414 | INFO     | preparing for final server update for job 7035985826 in state='finished'
[2026-03-03 17:00:13] 2026-03-03 15:59:40,415 | INFO     | reading metadata from: /var/lib/boinc/var/slot92/slots/0/PanDA_Pilot-7035985826/jobReport.json
[2026-03-03 17:00:13] 2026-03-03 15:59:40,416 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot92/slots/0/workernode_map.json
[2026-03-03 17:00:13] 2026-03-03 15:59:40,416 | INFO     | this job has now completed (state=finished)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,417 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,417 | INFO     | log transfer has been attempted: DONE
[2026-03-03 17:00:13] 2026-03-03 15:59:40,417 | INFO     | job 7035985826 has finished - writing final server update
[2026-03-03 17:00:13] 2026-03-03 15:59:40,417 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_59524/.job.ad'
[2026-03-03 17:00:13] 2026-03-03 15:59:40,417 | INFO     | total number of processed events: 400 (read)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,441 | INFO     | using path: /var/lib/boinc/var/slot92/slots/0/PanDA_Pilot-7035985826/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,442 | INFO     | extracted standard info from prmon json
[2026-03-03 17:00:13] 2026-03-03 15:59:40,442 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 17:00:13] 2026-03-03 15:59:40,442 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 17:00:13] 2026-03-03 15:59:40,442 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 17:00:13] 2026-03-03 15:59:40,442 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 17:00:13] 2026-03-03 15:59:40,443 | INFO     | fitting pss+swap vs Time
[2026-03-03 17:00:13] 2026-03-03 15:59:40,443 | INFO     | sum of square deviations: 89127252.5
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | sum of deviations: 567920888.4999999
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | mean x: 1772551434.5
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | mean y: 2313573.9242424243
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | intersect: -11292424649.866392
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | chi2: 0.00024207220310542774
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | current memory leak: 6.37 B/s (using 66 data points, chi2=0.00)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | could have reported an average CPU frequency of 3673 MHz (6 samples)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | ..............................
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | . Timing measurements:
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | . get job = 0 s
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | . initial setup = 0 s
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | . payload setup = 20 s
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | . stage-in = 0 s
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | . payload execution = 4450 s
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | . stage-out = 0 s
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | . log creation = 0 s
[2026-03-03 17:00:13] 2026-03-03 15:59:40,444 | INFO     | ..............................
[2026-03-03 17:00:13] 2026-03-03 15:59:40,792 | INFO     | PID=416361 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 17:00:13] 2026-03-03 15:59:40,792 | INFO     | .. there are 58 such processes running
[2026-03-03 17:00:13] 2026-03-03 15:59:40,848 | INFO     | 
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | job summary report
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | --------------------------------------------------
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | PanDA job id: 7035985826
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | task id: 48700858
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | errors: (none)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | pilot state: finished 
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | transexitcode: 0
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | exeerrorcode: 0
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | exeerrordiag: 
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | exitcode: 0
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | exitmsg: OK
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | cpuconsumptiontime: 15041 s
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | nevents: 400
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | neventsw: 0
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | pid: 724023
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | pgrp: 724023
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | corecount: 4
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | event service: False
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | sizes: {0: 2286713, 1: 2286975, 11: 2287003, 4474: 2313322, 4475: 2322398, 4476: 2322536}
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | --------------------------------------------------
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | 
[2026-03-03 17:00:13] 2026-03-03 15:59:40,849 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot92/slots/0
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,869 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,870 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,870 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,870 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 17:00:13] 2026-03-03 15:59:40,870 | INFO     | job 7035985826 has completed (purged errors)
[2026-03-03 17:00:13] 2026-03-03 15:59:40,870 | INFO     | overall cleanup function is called
[2026-03-03 17:00:13] 2026-03-03 15:59:41,876 | INFO     | --- collectZombieJob: --- 10, [724023]
[2026-03-03 17:00:13] 2026-03-03 15:59:41,877 | INFO     | zombie collector waiting for pid 724023
[2026-03-03 17:00:13] 2026-03-03 15:59:41,877 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 17:00:13] 2026-03-03 15:59:41,877 | INFO     | collected zombie processes
[2026-03-03 17:00:13] 2026-03-03 15:59:41,877 | INFO     | will attempt to kill all subprocesses of pid=724023
[2026-03-03 17:00:13] 2026-03-03 15:59:42,544 | INFO     | process IDs to be killed: [724023] (in reverse order)
[2026-03-03 17:00:13] 2026-03-03 15:59:42,765 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 17:00:13] 2026-03-03 15:59:42,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 17:00:13] 2026-03-03 15:59:42,793 | INFO     | did not find any defunct processes belonging to 724023
[2026-03-03 17:00:13] 2026-03-03 15:59:42,819 | INFO     | did not find any defunct processes belonging to 724023
[2026-03-03 17:00:13] 2026-03-03 15:59:42,820 | INFO     | ready for new job
[2026-03-03 17:00:13] 2026-03-03 15:59:42,820 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 17:00:13] 2026-03-03 15:59:42,821 | INFO     | **************************************
[2026-03-03 17:00:13] 2026-03-03 15:59:42,821 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 17:00:13] 2026-03-03 15:59:42,821 | INFO     | **************************************
[2026-03-03 17:00:13] 2026-03-03 15:59:42,821 | INFO     | 
[2026-03-03 17:00:13] 2026-03-03 15:59:42,828 | INFO     | architecture information:
[2026-03-03 17:00:13] 2026-03-03 15:59:42,828 | INFO     | executing command: cat /etc/os-release
[2026-03-03 17:00:13] 2026-03-03 15:59:42,857 | INFO     | cat /etc/os-release:
[2026-03-03 17:00:13] NAME="CentOS Linux"
[2026-03-03 17:00:13] VERSION="7 (Core)"
[2026-03-03 17:00:13] ID="centos"
[2026-03-03 17:00:13] ID_LIKE="rhel fedora"
[2026-03-03 17:00:13] VERSION_ID="7"
[2026-03-03 17:00:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 17:00:13] ANSI_COLOR="0;31"
[2026-03-03 17:00:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 17:00:13] HOME_URL="https://www.centos.org/"
[2026-03-03 17:00:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 17:00:13] 
[2026-03-03 17:00:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 17:00:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 17:00:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 17:00:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 17:00:13] 
[2026-03-03 17:00:13] 2026-03-03 15:59:42,860 | INFO     | **************************************
[2026-03-03 17:00:13] 2026-03-03 15:59:43,364 | INFO     | executing command: df -mP /var/lib/boinc/var/slot92/slots/0
[2026-03-03 17:00:13] 2026-03-03 15:59:43,384 | INFO     | sufficient remaining disk space (21876441088 B)
[2026-03-03 17:00:13] 2026-03-03 15:59:43,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 17:00:13] 2026-03-03 15:59:43,385 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 17:00:13] 2026-03-03 15:59:43,385 | INFO     | update_server=False
[2026-03-03 17:00:13] 2026-03-03 15:59:43,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 17:00:13] 2026-03-03 15:59:43,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 17:00:13] 2026-03-03 15:59:43,448 | INFO     | all payload control threads have been joined
[2026-03-03 17:00:13] 2026-03-03 15:59:43,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 17:00:13] 2026-03-03 15:59:43,452 | INFO     | aborting loop
[2026-03-03 17:00:13] 2026-03-03 15:59:43,908 | INFO     | all data control threads have been joined
[2026-03-03 17:00:13] 2026-03-03 15:59:44,390 | INFO     | [job] retrieve thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:44,454 | INFO     | [payload] control thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:44,457 | INFO     | [job] job monitor thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:44,520 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:44,570 | INFO     | [payload] validate_post thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:44,701 | INFO     | all job control threads have been joined
[2026-03-03 17:00:13] 2026-03-03 15:59:44,745 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:44,914 | INFO     | [data] control thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:45,392 | INFO     | [data] copytool_out thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:45,512 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 17:00:13] 2026-03-03 15:59:45,680 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 17:00:13] 2026-03-03 15:59:45,701 | INFO     | [payload] failed_post thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:45,707 | INFO     | [job] control thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:45,745 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:45,745 | INFO     | [job] validate thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:45,849 | INFO     | [data] copytool_in thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:46,517 | INFO     | [job] queue monitor thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:49,685 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 17:00:13] 2026-03-03 15:59:52,807 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-03-03 17:00:13] 2026-03-03 15:59:53,649 | INFO     | job.realtimelogging is not enabled
[2026-03-03 17:00:13] 2026-03-03 15:59:54,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 17:00:13] 2026-03-03 16:00:00,631 | INFO     | [monitor] cgroup control has ended
[2026-03-03 17:00:13] 2026-03-03 16:00:02,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22748936943424)>', '<ExcThread(monitor, started 22748700354304)>']
[2026-03-03 17:00:13] 2026-03-03 16:00:07,148 | INFO     | all workflow threads have been joined
[2026-03-03 17:00:13] 2026-03-03 16:00:07,149 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 17:00:13] 2026-03-03 16:00:07,149 | INFO     | traces error code: 0
[2026-03-03 17:00:13] 2026-03-03 16:00:07,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 17:00:13] 2026-03-03 16:00:13,467 | INFO     | PID=416361 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-03 17:00:13] 2026-03-03 16:00:13,467 | INFO     | .. there are 58 such processes running
[2026-03-03 17:00:13] 2026-03-03 16:00:13,468 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 17:00:13] 2026-03-03 16:00:13,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 17:00:13] 2026-03-03 16:00:13,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 17:00:13] 2026-03-03 16:00:13,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 17:00:13] 2026-03-03 16:00:13,468 | CRITICAL | thread 'MainThread' is not alive
[2026-03-03 17:00:13] 2026-03-03 16:00:13,468 | INFO     | [monitor] control thread has ended
[2026-03-03 17:00:13] 2026-03-03 16:00:13,659 [wrapper] ==== pilot stdout END ====
[2026-03-03 17:00:13] 2026-03-03 16:00:13,661 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 17:00:13] 2026-03-03 16:00:13,666 [wrapper] pilotpid: 416361
[2026-03-03 17:00:13] 2026-03-03 16:00:13,683 [wrapper] Pilot exit status: 0
[2026-03-03 17:00:13] 2026-03-03 16:00:13,703 [wrapper] pandaids: 7035985826 7035985826
[2026-03-03 17:00:13] 2026-03-03 16:00:13,818 [wrapper] cleanup supervisor_pilot 1592468 416370
[2026-03-03 17:00:13] 2026-03-03 16:00:13,821 [wrapper] Test setup, not cleaning
[2026-03-03 17:00:13] 2026-03-03 16:00:13,824 [wrapper] apfmon messages muted
[2026-03-03 17:00:13] 2026-03-03 16:00:13,826 [wrapper] ==== wrapper stdout END ====
[2026-03-03 17:00:13] 2026-03-03 16:00:13,850 [wrapper] ==== wrapper stderr END ====
[2026-03-03 17:00:13]  *** Error codes and diagnostics ***
[2026-03-03 17:00:13]     "exeErrorCode": 0,
[2026-03-03 17:00:13]     "exeErrorDiag": "",
[2026-03-03 17:00:13]     "pilotErrorCode": 0,
[2026-03-03 17:00:13]     "pilotErrorDiag": "",
[2026-03-03 17:00:13]  *** Listing of results directory ***
[2026-03-03 17:00:14] total 518908
[2026-03-03 17:00:14] drwx------. 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc      5111 Mar  2 13:41 queuedata.json
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc    584627 Mar  2 13:41 pilot3.tar.gz
[2026-03-03 17:00:14] -rwx------. 1 boinc boinc     36322 Mar  2 13:42 runpilot2-wrapper.sh
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc       100 Mar  3 15:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 17:00:14] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 15:10 run_atlas
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc       105 Mar  3 15:10 job.xml
[2026-03-03 17:00:14] -rw-r--r--. 3 boinc boinc 190774757 Mar  3 15:10 EVNT.48700856._000074.pool.root.1
[2026-03-03 17:00:14] -rw-r--r--. 3 boinc boinc 190774757 Mar  3 15:10 ATLAS.root_0
[2026-03-03 17:00:14] -rw-r--r--. 2 boinc boinc     15845 Mar  3 15:10 start_atlas.sh
[2026-03-03 17:00:14] drwxrwx--x. 2 boinc boinc      4096 Mar  3 15:10 shared
[2026-03-03 17:00:14] -rw-r--r--. 2 boinc boinc    597937 Mar  3 15:10 input.tar.gz
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc         0 Mar  3 15:10 boinc_lockfile
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc   1516104 Mar  3 15:11 agis_ddmendpoints.agis.ALL.json
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc      2520 Mar  3 15:44 pandaJob.out
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc    998442 Mar  3 15:44 agis_schedconf.cvmfs.json
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc       443 Mar  3 15:44 workernode_map.json
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc      6712 Mar  3 16:11 init_data.xml
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc 144042650 Mar  3 16:59 HITS.48700858._001862.pool.root.1
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc       529 Mar  3 16:59 boinc_task_state.xml
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc      1028 Mar  3 16:59 memory_monitor_summary.json
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc    262506 Mar  3 16:59 log.48700858._001862.job.log.tgz.1
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc      6345 Mar  3 16:59 heartbeat.json
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc        27 Mar  3 17:00 wrapper_checkpoint.txt
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc      8192 Mar  3 17:00 boinc_mmap_file
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc       892 Mar  3 17:00 pilotlog.txt
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc        96 Mar  3 17:00 pilot_heartbeat.json
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc    655759 Mar  3 17:00 log.48700858._001862.job.log.1
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc       357 Mar  3 17:00 output.list
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc       620 Mar  3 17:00 runtime_log
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc    931840 Mar  3 17:00 result.tar.gz
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc      9281 Mar  3 17:00 runtime_log.err
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc       787 Mar  3 17:00 jTrLDm3mHH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmhLBLDma4NvVm.diag
[2026-03-03 17:00:14] -rw-r--r--. 1 boinc boinc     23262 Mar  3 17:00 stderr.txt
[2026-03-03 17:00:14] HITS file was successfully produced:
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc 144042650 Mar  3 16:59 shared/HITS.pool.root.1
[2026-03-03 17:00:14]  *** Contents of shared directory: ***
[2026-03-03 17:00:14] total 328492
[2026-03-03 17:00:14] -rw-r--r--. 3 boinc boinc 190774757 Mar  3 15:10 ATLAS.root_0
[2026-03-03 17:00:14] -rw-r--r--. 2 boinc boinc     15845 Mar  3 15:10 start_atlas.sh
[2026-03-03 17:00:14] -rw-r--r--. 2 boinc boinc    597937 Mar  3 15:10 input.tar.gz
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc 144042650 Mar  3 16:59 HITS.pool.root.1
[2026-03-03 17:00:14] -rw-------. 1 boinc boinc    931840 Mar  3 17:00 result.tar.gz
17:00:15 (71558): run_atlas exited; CPU time 15191.554739
17:00:15 (71558): called boinc_finish(0)

</stderr_txt>
]]>

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