Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:46:25 (303): wrapper (7.7.26015): starting
06:46:25 (303): wrapper: running run_atlas (--nthreads 8)
[2026-03-03 06:46:25] Arguments: --nthreads 8
[2026-03-03 06:46:25] Threads: 8
[2026-03-03 06:46:25] Checking for CVMFS
[2026-03-03 06:46:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 06:46:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 06:46:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 06:46:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 06:46:28] 2.11.2.0 10929 111315 134728 156834 3 55 24780155 25165825 899 130560 158 35525357 99.842 20917692 764 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-03 06:46:28] CVMFS is ok
[2026-03-03 06:46:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 06:46:28] Checking for apptainer binary...
[2026-03-03 06:46:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 06:46:28] Running /usr/bin/apptainer --version
[2026-03-03 06:46:28] apptainer version 1.3.2-1.el7
[2026-03-03 06:46:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 06:46:45] cg-vwn424.simple-grid.lan
[2026-03-03 06:46:45] apptainer works
[2026-03-03 06:46:45] Set ATHENA_PROC_NUMBER=8
[2026-03-03 06:46:45] Set ATHENA_CORE_NUMBER=8
[2026-03-03 06:46:45] Starting ATLAS job with PandaID=7035985889
[2026-03-03 06:46:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:16:52]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:16:52] 2026-03-03 09:16:02,803 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7035985889/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:16:52] 2026-03-03 09:16:02,804 | INFO     | extracted standard info from prmon json
[2026-03-03 10:16:52] 2026-03-03 09:16:02,804 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:16:52] 2026-03-03 09:16:02,804 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:16:52] 2026-03-03 09:16:02,805 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:16:52] 2026-03-03 09:16:02,805 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:16:52] 2026-03-03 09:16:02,810 | INFO     | fitting pss+swap vs Time
[2026-03-03 10:16:52] 2026-03-03 09:16:02,810 | INFO     | sum of square deviations: 2299168690.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,812 | INFO     | sum of deviations: 111706062791.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,812 | INFO     | mean x: 1772523417.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,812 | INFO     | mean y: 2354595.2974358974
[2026-03-03 10:16:52] 2026-03-03 09:16:02,812 | INFO     | intersect: -86116429545.73045
[2026-03-03 10:16:52] 2026-03-03 09:16:02,813 | INFO     | chi2: 8.25478104385536
[2026-03-03 10:16:52] 2026-03-03 09:16:02,813 | INFO     | sum of square deviations: 2126802667.5
[2026-03-03 10:16:52] 2026-03-03 09:16:02,815 | INFO     | sum of deviations: 121229982237.99997
[2026-03-03 10:16:52] 2026-03-03 09:16:02,815 | INFO     | mean x: 1772523264.5
[2026-03-03 10:16:52] 2026-03-03 09:16:02,815 | INFO     | mean y: 2362785.6631578947
[2026-03-03 10:16:52] 2026-03-03 09:16:02,815 | INFO     | intersect: -101033321979.75323
[2026-03-03 10:16:52] 2026-03-03 09:16:02,816 | INFO     | chi2: 7.5554068862084725
[2026-03-03 10:16:52] 2026-03-03 09:16:02,816 | INFO     | current chi2=7.5554068862084725 (change=8.472352615185146 %)
[2026-03-03 10:16:52] 2026-03-03 09:16:02,816 | INFO     | right removable region: 189
[2026-03-03 10:16:52] 2026-03-03 09:16:02,816 | INFO     | sum of square deviations: 2126802667.5
[2026-03-03 10:16:52] 2026-03-03 09:16:02,818 | INFO     | sum of deviations: 46351732060.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,818 | INFO     | mean x: 1772523569.5
[2026-03-03 10:16:52] 2026-03-03 09:16:02,818 | INFO     | mean y: 2412366.6842105263
[2026-03-03 10:16:52] 2026-03-03 09:16:02,818 | INFO     | intersect: -38628128594.63362
[2026-03-03 10:16:52] 2026-03-03 09:16:02,819 | INFO     | chi2: 3.2358161423511174
[2026-03-03 10:16:52] 2026-03-03 09:16:02,819 | INFO     | current chi2=3.2358161423511174 (change=60.80070294826568 %)
[2026-03-03 10:16:52] 2026-03-03 09:16:02,819 | INFO     | sum of square deviations: 1963274020.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,821 | INFO     | sum of deviations: -546935028.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,821 | INFO     | mean x: 1772523722.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,821 | INFO     | mean y: 2456000.416216216
[2026-03-03 10:16:52] 2026-03-03 09:16:02,821 | INFO     | intersect: 496251212.72322476
[2026-03-03 10:16:52] 2026-03-03 09:16:02,822 | INFO     | chi2: 0.8592211724719954
[2026-03-03 10:16:52] 2026-03-03 09:16:02,822 | INFO     | current chi2=0.8592211724719954 (change=73.4465391520146 %)
[2026-03-03 10:16:52] 2026-03-03 09:16:02,822 | INFO     | sum of square deviations: 1808350185.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,823 | INFO     | sum of deviations: -5988039227.500001
[2026-03-03 10:16:52] 2026-03-03 09:16:02,824 | INFO     | mean x: 1772523874.5
[2026-03-03 10:16:52] 2026-03-03 09:16:02,824 | INFO     | mean y: 2461289.061111111
[2026-03-03 10:16:52] 2026-03-03 09:16:02,824 | INFO     | intersect: 5871867878.68484
[2026-03-03 10:16:52] 2026-03-03 09:16:02,824 | INFO     | chi2: 0.8074790284026857
[2026-03-03 10:16:52] 2026-03-03 09:16:02,825 | INFO     | current chi2=0.8074790284026857 (change=6.021981967744876 %)
[2026-03-03 10:16:52] 2026-03-03 09:16:02,825 | INFO     | left removable region: 30
[2026-03-03 10:16:52] 2026-03-03 09:16:02,825 | INFO     | sum of square deviations: 1246386160.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,826 | INFO     | sum of deviations: 3776415450.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,826 | INFO     | mean x: 1772524149.0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,826 | INFO     | mean y: 2475500.8050314467
[2026-03-03 10:16:52] 2026-03-03 09:16:02,827 | INFO     | intersect: -5368081230.811518
[2026-03-03 10:16:52] 2026-03-03 09:16:02,827 | INFO     | chi2: 0.0004119017394598332
[2026-03-03 10:16:52] 2026-03-03 09:16:02,827 | INFO     | current memory leak: 3.03 B/s (using 159 data points, chi2=0.00)
[2026-03-03 10:16:52] 2026-03-03 09:16:02,828 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-03-03 10:16:52] 2026-03-03 09:16:02,828 | INFO     | ..............................
[2026-03-03 10:16:52] 2026-03-03 09:16:02,828 | INFO     | . Timing measurements:
[2026-03-03 10:16:52] 2026-03-03 09:16:02,828 | INFO     | . get job = 0 s
[2026-03-03 10:16:52] 2026-03-03 09:16:02,828 | INFO     | . initial setup = 118 s
[2026-03-03 10:16:52] 2026-03-03 09:16:02,829 | INFO     | . payload setup = 151 s
[2026-03-03 10:16:52] 2026-03-03 09:16:02,829 | INFO     | . stage-in = 0 s
[2026-03-03 10:16:52] 2026-03-03 09:16:02,829 | INFO     | . payload execution = 11988 s
[2026-03-03 10:16:52] 2026-03-03 09:16:02,829 | INFO     | . stage-out = 4 s
[2026-03-03 10:16:52] 2026-03-03 09:16:02,829 | INFO     | . log creation = 1 s
[2026-03-03 10:16:52] 2026-03-03 09:16:02,829 | INFO     | ..............................
[2026-03-03 10:16:52] 2026-03-03 09:16:02,971 | INFO     | 
[2026-03-03 10:16:52] 2026-03-03 09:16:02,971 | INFO     | job summary report
[2026-03-03 10:16:52] 2026-03-03 09:16:02,972 | INFO     | --------------------------------------------------
[2026-03-03 10:16:52] 2026-03-03 09:16:02,972 | INFO     | PanDA job id: 7035985889
[2026-03-03 10:16:52] 2026-03-03 09:16:02,972 | INFO     | task id: 48700858
[2026-03-03 10:16:52] 2026-03-03 09:16:02,972 | INFO     | errors: (none)
[2026-03-03 10:16:52] 2026-03-03 09:16:02,972 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:16:52] 2026-03-03 09:16:02,972 | INFO     | pilot state: finished 
[2026-03-03 10:16:52] 2026-03-03 09:16:02,972 | INFO     | transexitcode: 0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,972 | INFO     | exeerrorcode: 0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | exeerrordiag: 
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | exitcode: 0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | exitmsg: OK
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | cpuconsumptiontime: 44212 s
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | nevents: 400
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | neventsw: 0
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | pid: 9047
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | pgrp: 9047
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | corecount: 8
[2026-03-03 10:16:52] 2026-03-03 09:16:02,973 | INFO     | event service: False
[2026-03-03 10:16:52] 2026-03-03 09:16:02,974 | INFO     | sizes: {0: 2281674, 1: 2282131, 2: 2282219, 12: 2282219, 12144: 2311785, 12150: 2320783, 12151: 2321161}
[2026-03-03 10:16:52] 2026-03-03 09:16:02,974 | INFO     | --------------------------------------------------
[2026-03-03 10:16:52] 2026-03-03 09:16:02,974 | INFO     | 
[2026-03-03 10:16:52] 2026-03-03 09:16:02,974 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-03 10:16:52] 2026-03-03 09:16:03,165 | INFO     | time since job start (12164s) is within the limit (349056.0s)
[2026-03-03 10:16:52] 2026-03-03 09:16:03,575 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,576 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,576 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,576 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,578 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:16:52] 2026-03-03 09:16:03,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,578 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:16:52] 2026-03-03 09:16:03,578 | INFO     | job 7035985889 has completed (purged errors)
[2026-03-03 10:16:52] 2026-03-03 09:16:03,578 | INFO     | overall cleanup function is called
[2026-03-03 10:16:52] 2026-03-03 09:16:04,587 | INFO     | --- collectZombieJob: --- 10, [9047]
[2026-03-03 10:16:52] 2026-03-03 09:16:04,588 | INFO     | zombie collector waiting for pid 9047
[2026-03-03 10:16:52] 2026-03-03 09:16:04,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:16:52] 2026-03-03 09:16:04,588 | INFO     | collected zombie processes
[2026-03-03 10:16:52] 2026-03-03 09:16:04,588 | INFO     | will attempt to kill all subprocesses of pid=9047
[2026-03-03 10:16:52] 2026-03-03 09:16:04,659 | INFO     | process IDs to be killed: [9047] (in reverse order)
[2026-03-03 10:16:52] 2026-03-03 09:16:04,704 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:16:52] 2026-03-03 09:16:04,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:16:52] 2026-03-03 09:16:04,706 | INFO     | did not find any defunct processes belonging to 9047
[2026-03-03 10:16:52] 2026-03-03 09:16:04,708 | INFO     | did not find any defunct processes belonging to 9047
[2026-03-03 10:16:52] 2026-03-03 09:16:04,708 | INFO     | ready for new job
[2026-03-03 10:16:52] 2026-03-03 09:16:04,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:16:52] 2026-03-03 09:16:04,711 | INFO     | **************************************
[2026-03-03 10:16:52] 2026-03-03 09:16:04,711 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:16:52] 2026-03-03 09:16:04,711 | INFO     | **************************************
[2026-03-03 10:16:52] 2026-03-03 09:16:04,711 | INFO     | 
[2026-03-03 10:16:52] 2026-03-03 09:16:04,712 | INFO     | pilot is running in a VM
[2026-03-03 10:16:52] 2026-03-03 09:16:04,712 | INFO     | architecture information:
[2026-03-03 10:16:52] 2026-03-03 09:16:04,712 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:16:52] 2026-03-03 09:16:04,740 | INFO     | cat /etc/os-release:
[2026-03-03 10:16:52] NAME="CentOS Linux"
[2026-03-03 10:16:52] VERSION="7 (Core)"
[2026-03-03 10:16:52] ID="centos"
[2026-03-03 10:16:52] ID_LIKE="rhel fedora"
[2026-03-03 10:16:52] VERSION_ID="7"
[2026-03-03 10:16:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:16:52] ANSI_COLOR="0;31"
[2026-03-03 10:16:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:16:52] HOME_URL="https://www.centos.org/"
[2026-03-03 10:16:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:16:52] 
[2026-03-03 10:16:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:16:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:16:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:16:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:16:52] 
[2026-03-03 10:16:52] 2026-03-03 09:16:04,740 | INFO     | **************************************
[2026-03-03 10:16:52] 2026-03-03 09:16:05,243 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-03 10:16:52] 2026-03-03 09:16:05,520 | INFO     | sufficient remaining disk space (496246980608 B)
[2026-03-03 10:16:52] 2026-03-03 09:16:05,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:16:52] 2026-03-03 09:16:05,520 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:16:52] 2026-03-03 09:16:05,521 | INFO     | update_server=False
[2026-03-03 10:16:52] 2026-03-03 09:16:05,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:16:52] 2026-03-03 09:16:05,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:16:52] 2026-03-03 09:16:05,650 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-03 10:16:52] 2026-03-03 09:16:05,651 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-03 10:16:52] 2026-03-03 09:16:05,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:16:52] 2026-03-03 09:16:05,651 | INFO     | will abort loop
[2026-03-03 10:16:52] 2026-03-03 09:16:05,899 | INFO     | all payload control threads have been joined
[2026-03-03 10:16:52] 2026-03-03 09:16:06,001 | INFO     | all data control threads have been joined
[2026-03-03 10:16:52] 2026-03-03 09:16:06,242 | INFO     | all job control threads have been joined
[2026-03-03 10:16:52] 2026-03-03 09:16:06,526 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:06,656 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:06,905 | INFO     | [payload] control thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,007 | INFO     | [data] control thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,061 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,138 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,248 | INFO     | [job] control thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,437 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,463 | INFO     | [job] validate thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,494 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,504 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,528 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,773 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:07,985 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:16:52] 2026-03-03 09:16:08,022 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:08,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:16:52] 2026-03-03 09:16:08,991 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:12,817 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:16:52] 2026-03-03 09:16:36,296 | INFO     | PID=4580 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-03 10:16:52] 2026-03-03 09:16:36,296 | INFO     | .. there are 2 such processes running
[2026-03-03 10:16:52] 2026-03-03 09:16:36,297 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:16:52] 2026-03-03 09:16:36,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:16:52] 2026-03-03 09:16:36,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:16:52] 2026-03-03 09:16:39,587 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:16:52] 2026-03-03 09:16:41,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678747498304)>', '<ExcThread(monitor, started 139678158149376)>']
[2026-03-03 10:16:52] 2026-03-03 09:16:42,333 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:16:52] 2026-03-03 09:16:42,334 | INFO     | [monitor] control thread has ended
[2026-03-03 10:16:52] 2026-03-03 09:16:46,620 | INFO     | all workflow threads have been joined
[2026-03-03 10:16:52] 2026-03-03 09:16:46,621 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:16:52] 2026-03-03 09:16:46,621 | INFO     | traces error code: 0
[2026-03-03 10:16:52] 2026-03-03 09:16:46,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:16:52] 2026-03-03 09:16:47,180 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:16:52] 2026-03-03 09:16:47,264 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:16:52] 2026-03-03 09:16:47,351 [wrapper] pilotpid: 4580
[2026-03-03 10:16:52] 2026-03-03 09:16:47,464 [wrapper] Pilot exit status: 0
[2026-03-03 10:16:52] 2026-03-03 09:16:47,920 [wrapper] pandaids: 7035985889
[2026-03-03 10:16:52] 2026-03-03 09:16:49,057 [wrapper] cleanup supervisor_pilot 14606 4581
[2026-03-03 10:16:52] 2026-03-03 09:16:49,150 [wrapper] Test setup, not cleaning
[2026-03-03 10:16:52] 2026-03-03 09:16:49,231 [wrapper] apfmon messages muted
[2026-03-03 10:16:52] 2026-03-03 09:16:49,367 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:16:52] 2026-03-03 09:16:49,453 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:16:52]  *** Error codes and diagnostics ***
[2026-03-03 10:16:52]     "exeErrorCode": 0,
[2026-03-03 10:16:52]     "exeErrorDiag": "",
[2026-03-03 10:16:52]     "pilotErrorCode": 0,
[2026-03-03 10:16:52]     "pilotErrorDiag": "",
[2026-03-03 10:16:52]  *** Listing of results directory ***
[2026-03-03 10:16:52] total 343140
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc      5111 Mar  2 13:41 queuedata.json
[2026-03-03 10:16:52] -rwx------. 1 boinc boinc     36322 Mar  2 13:41 runpilot2-wrapper.sh
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc    584627 Mar  2 13:41 pilot3.tar.gz
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc       100 Mar  3 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:16:52] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 06:46 run_atlas
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc       105 Mar  3 06:46 job.xml
[2026-03-03 10:16:52] -rw-r--r--. 2 boinc boinc 193267379 Mar  3 06:46 EVNT.48700856._000077.pool.root.1
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc      6390 Mar  3 06:46 init_data.xml
[2026-03-03 10:16:52] -rw-r--r--. 2 boinc boinc     15845 Mar  3 06:46 start_atlas.sh
[2026-03-03 10:16:52] drwxrwx--x. 2 boinc boinc        68 Mar  3 06:46 shared
[2026-03-03 10:16:52] -rw-r--r--. 2 boinc boinc    597931 Mar  3 06:46 input.tar.gz
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc         0 Mar  3 06:46 boinc_lockfile
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc      2519 Mar  3 06:46 pandaJob.out
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc       415 Mar  3 06:53 workernode_map.json
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc    997730 Mar  3 06:53 agis_schedconf.cvmfs.json
[2026-03-03 10:16:52] drwx------. 5 boinc boinc      4096 Mar  3 06:53 pilot3
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc 149925964 Mar  3 10:14 HITS.48700858._001925.pool.root.1
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc       530 Mar  3 10:14 boinc_task_state.xml
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc      1011 Mar  3 10:15 memory_monitor_summary.json
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc   1512931 Mar  3 10:15 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc    421296 Mar  3 10:16 log.48700858._001925.job.log.tgz.1
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc      6312 Mar  3 10:16 heartbeat.json
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc        95 Mar  3 10:16 pilot_heartbeat.json
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc        28 Mar  3 10:16 wrapper_checkpoint.txt
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc      5065 Mar  3 10:16 pilotlog.txt
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc   1715194 Mar  3 10:16 log.48700858._001925.job.log.1
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc       357 Mar  3 10:16 output.list
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc       620 Mar  3 10:16 runtime_log
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc   2150400 Mar  3 10:16 result.tar.gz
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc      8816 Mar  3 10:16 runtime_log.err
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc       654 Mar  3 10:16 0Q0KDmylHH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmxJBLDmpuu1Tm.diag
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc      8192 Mar  3 10:16 boinc_mmap_file
[2026-03-03 10:16:52] -rw-r--r--. 1 boinc boinc     20701 Mar  3 10:16 stderr.txt
[2026-03-03 10:16:52] HITS file was successfully produced:
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc 149925964 Mar  3 10:14 shared/HITS.pool.root.1
[2026-03-03 10:16:52]  *** Contents of shared directory: ***
[2026-03-03 10:16:52] total 337856
[2026-03-03 10:16:52] -rw-r--r--. 2 boinc boinc 193267379 Mar  3 06:46 ATLAS.root_0
[2026-03-03 10:16:52] -rw-r--r--. 2 boinc boinc     15845 Mar  3 06:46 start_atlas.sh
[2026-03-03 10:16:52] -rw-r--r--. 2 boinc boinc    597931 Mar  3 06:46 input.tar.gz
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc 149925964 Mar  3 10:14 HITS.pool.root.1
[2026-03-03 10:16:52] -rw-------. 1 boinc boinc   2150400 Mar  3 10:16 result.tar.gz
10:16:53 (303): run_atlas exited; CPU time 44347.186597
10:16:53 (303): called boinc_finish(0)

</stderr_txt>
]]>

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