Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:14:08 (79976): wrapper (7.7.26015): starting
19:14:08 (79976): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 19:14:08] Arguments: --nthreads 4
[2026-03-02 19:14:08] Threads: 4
[2026-03-02 19:14:08] Checking for CVMFS
[2026-03-02 19:14:08] No cvmfs_config command found, will try listing directly
[2026-03-02 19:14:08] CVMFS is ok
[2026-03-02 19:14:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 19:14:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 19:14:08] Further information can be found at the LHC@home message board.
[2026-03-02 19:14:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 19:14:08] Checking for apptainer binary...
[2026-03-02 19:14:08] which: no apptainer in ((null))
[2026-03-02 19:14:08] apptainer is not installed, using version from CVMFS
[2026-03-02 19:14:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 19:14:08] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-02 19:14:08] apptainer works
[2026-03-02 19:14:08] Set ATHENA_PROC_NUMBER=4
[2026-03-02 19:14:08] Set ATHENA_CORE_NUMBER=4
[2026-03-02 19:14:08] Starting ATLAS job with PandaID=7037142492
[2026-03-02 19:14:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 20:38:48]  *** The last 200 lines of the pilot log: ***
[2026-03-02 20:38:48] ]
[2026-03-02 20:38:48] 2026-03-02 19:37:40,163 | INFO     | transferring file log.48936013._000038.job.log.tgz.1 from /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492/log.48936013._000038.job.log.tgz.1 to /var/lib/b
[2026-03-02 20:38:48] 2026-03-02 19:37:40,163 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492/log.48936013._000038.job.log.tgz.1 /var/lib/boinc/var/slot84/slots/0/lo
[2026-03-02 20:38:48] 2026-03-02 19:37:40,178 | INFO     | adding to output.list: log.48936013._000038.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/8f/log.48936013._000038.job.log.tg
[2026-03-02 20:38:48] 2026-03-02 19:37:40,178 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-02 20:38:48] 2026-03-02 19:37:40,178 | INFO     | summary of transferred files:
[2026-03-02 20:38:48] 2026-03-02 19:37:40,178 | INFO     |  -- lfn=log.48936013._000038.job.log.tgz.1, status_code=0, status=transferred
[2026-03-02 20:38:48] 2026-03-02 19:37:40,178 | INFO     | stage-out finished correctly
[2026-03-02 20:38:48] 2026-03-02 19:37:41,098 | INFO     | PID=359280 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 20:38:48] 2026-03-02 19:37:41,098 | INFO     | .. there are 55 such processes running
[2026-03-02 20:38:48] 2026-03-02 19:37:41,960 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-02 20:38:48] 2026-03-02 19:37:42,098 | INFO     | time since job start (4988s) is within the limit (349056.0s)
[2026-03-02 20:38:48] 2026-03-02 19:37:42,525 | WARNING  | process 772804 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 20:38:48] 2026-03-02 19:37:42,525 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 20:38:48] 2026-03-02 19:37:42,526 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 20:38:48] 2026-03-02 19:37:42,526 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-02 20:38:48] 2026-03-02 19:37:42,526 | WARNING  | maxPSS not found in memory monitor output
[2026-03-02 20:38:48] 2026-03-02 19:37:42,526 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2392594 B
[2026-03-02 20:38:48] 2026-03-02 19:37:42,526 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15353 B
[2026-03-02 20:38:48] 2026-03-02 19:37:42,526 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/0
[2026-03-02 20:38:48] 2026-03-02 19:37:42,538 | INFO     | sufficient remaining disk space (226293186560 B)
[2026-03-02 20:38:48] 2026-03-02 19:37:42,539 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-02 20:38:48] 2026-03-02 19:37:42,539 | INFO     | size of work directory /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492: 2693332 B (within 5033164800 B limit)
[2026-03-02 20:38:48] 2026-03-02 19:37:42,539 | INFO     | pfn file=/var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492/HITS.48936013._000038.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-02 20:38:48] 2026-03-02 19:37:42,539 | INFO     | total size of present files: 0 B (workdir size: 2693332 B)
[2026-03-02 20:38:48] 2026-03-02 19:37:42,539 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492/HITS.48936013._000038.pool.root.1 since it does not exist
[2026-03-02 20:38:48] 2026-03-02 19:37:42,818 | INFO     | number of running child processes to parent process 772804: 1
[2026-03-02 20:38:48] 2026-03-02 19:37:42,819 | INFO     | maximum number of monitored processes: 6
[2026-03-02 20:38:48] 2026-03-02 19:37:44,104 | INFO     | time since job start (4990s) is within the limit (349056.0s)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,243 | INFO     | job 7037142492 has state=finished
[2026-03-02 20:38:48] 2026-03-02 19:37:44,243 | INFO     | preparing for final server update for job 7037142492 in state='finished'
[2026-03-02 20:38:48] 2026-03-02 19:37:44,244 | INFO     | reading metadata from: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492/jobReport.json
[2026-03-02 20:38:48] 2026-03-02 19:37:44,245 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot84/slots/0/workernode_map.json
[2026-03-02 20:38:48] 2026-03-02 19:37:44,246 | INFO     | this job has now completed (state=finished)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,246 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,246 | INFO     | log transfer has been attempted: DONE
[2026-03-02 20:38:48] 2026-03-02 19:37:44,246 | INFO     | job 7037142492 has finished - writing final server update
[2026-03-02 20:38:48] 2026-03-02 19:37:44,246 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_18803/.job.ad'
[2026-03-02 20:38:48] 2026-03-02 19:37:44,246 | INFO     | total number of processed events: 400 (read)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,257 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7037142492/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,257 | INFO     | extracted standard info from prmon json
[2026-03-02 20:38:48] 2026-03-02 19:37:44,257 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 20:38:48] 2026-03-02 19:37:44,257 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 20:38:48] 2026-03-02 19:37:44,257 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 20:38:48] 2026-03-02 19:37:44,257 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 20:38:48] 2026-03-02 19:37:44,258 | INFO     | fitting pss+swap vs Time
[2026-03-02 20:38:48] 2026-03-02 19:37:44,258 | INFO     | sum of square deviations: 125630262.5
[2026-03-02 20:38:48] 2026-03-02 19:37:44,258 | INFO     | sum of deviations: 454362038.0
[2026-03-02 20:38:48] 2026-03-02 19:37:44,258 | INFO     | mean x: 1772477860.5
[2026-03-02 20:38:48] 2026-03-02 19:37:44,258 | INFO     | mean y: 2337162.945945946
[2026-03-02 20:38:48] 2026-03-02 19:37:44,258 | INFO     | intersect: -6408113925.673404
[2026-03-02 20:38:48] 2026-03-02 19:37:44,258 | INFO     | chi2: 0.0003609533600998752
[2026-03-02 20:38:48] 2026-03-02 19:37:44,258 | INFO     | current memory leak: 3.62 B/s (using 74 data points, chi2=0.00)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | could have reported an average CPU frequency of 4415 MHz (6 samples)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | ..............................
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | . Timing measurements:
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | . get job = 0 s
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | . initial setup = 10 s
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | . payload setup = 18 s
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | . stage-in = 0 s
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | . payload execution = 4952 s
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | . stage-out = 0 s
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | . log creation = 0 s
[2026-03-02 20:38:48] 2026-03-02 19:37:44,259 | INFO     | ..............................
[2026-03-02 20:38:48] 2026-03-02 19:37:44,468 | INFO     | 
[2026-03-02 20:38:48] 2026-03-02 19:37:44,468 | INFO     | job summary report
[2026-03-02 20:38:48] 2026-03-02 19:37:44,468 | INFO     | --------------------------------------------------
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | PanDA job id: 7037142492
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | task id: 48936013
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | errors: (none)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | pilot state: finished 
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | transexitcode: 0
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | exeerrorcode: 0
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | exeerrordiag: 
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | exitcode: 0
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | exitmsg: OK
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | cpuconsumptiontime: 19062 s
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | nevents: 400
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | neventsw: 0
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | pid: 772804
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | pgrp: 772804
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | corecount: 4
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | event service: False
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | sizes: {0: 2282253, 11: 2282253, 4974: 2308570, 4975: 2317590, 4977: 2317646, 4979: 2317868}
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | --------------------------------------------------
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | 
[2026-03-02 20:38:48] 2026-03-02 19:37:44,469 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/0
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,485 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 20:38:48] 2026-03-02 19:37:44,486 | INFO     | job 7037142492 has completed (purged errors)
[2026-03-02 20:38:48] 2026-03-02 19:37:44,486 | INFO     | overall cleanup function is called
[2026-03-02 20:38:48] 2026-03-02 19:37:45,492 | INFO     | --- collectZombieJob: --- 10, [772804]
[2026-03-02 20:38:48] 2026-03-02 19:37:45,492 | INFO     | zombie collector waiting for pid 772804
[2026-03-02 20:38:48] 2026-03-02 19:37:45,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 20:38:48] 2026-03-02 19:37:45,492 | INFO     | collected zombie processes
[2026-03-02 20:38:48] 2026-03-02 19:37:45,492 | INFO     | will attempt to kill all subprocesses of pid=772804
[2026-03-02 20:38:48] 2026-03-02 19:37:45,795 | INFO     | process IDs to be killed: [772804] (in reverse order)
[2026-03-02 20:38:48] 2026-03-02 19:37:45,962 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 20:38:48] 2026-03-02 19:37:45,962 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 20:38:48] 2026-03-02 19:37:45,987 | INFO     | did not find any defunct processes belonging to 772804
[2026-03-02 20:38:48] 2026-03-02 19:37:46,005 | INFO     | did not find any defunct processes belonging to 772804
[2026-03-02 20:38:48] 2026-03-02 19:37:46,005 | INFO     | ready for new job
[2026-03-02 20:38:48] 2026-03-02 19:37:46,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 20:38:48] 2026-03-02 19:37:46,006 | INFO     | **************************************
[2026-03-02 20:38:48] 2026-03-02 19:37:46,007 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 20:38:48] 2026-03-02 19:37:46,007 | INFO     | **************************************
[2026-03-02 20:38:48] 2026-03-02 19:37:46,007 | INFO     | 
[2026-03-02 20:38:48] 2026-03-02 19:37:46,011 | INFO     | architecture information:
[2026-03-02 20:38:48] 2026-03-02 19:37:46,011 | INFO     | executing command: cat /etc/os-release
[2026-03-02 20:38:48] 2026-03-02 19:37:46,023 | INFO     | cat /etc/os-release:
[2026-03-02 20:38:48] NAME="CentOS Linux"
[2026-03-02 20:38:48] VERSION="7 (Core)"
[2026-03-02 20:38:48] ID="centos"
[2026-03-02 20:38:48] ID_LIKE="rhel fedora"
[2026-03-02 20:38:48] VERSION_ID="7"
[2026-03-02 20:38:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 20:38:48] ANSI_COLOR="0;31"
[2026-03-02 20:38:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 20:38:48] HOME_URL="https://www.centos.org/"
[2026-03-02 20:38:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 20:38:48] 
[2026-03-02 20:38:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 20:38:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 20:38:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 20:38:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 20:38:48] 
[2026-03-02 20:38:48] 2026-03-02 19:37:46,024 | INFO     | **************************************
[2026-03-02 20:38:48] 2026-03-02 19:37:46,527 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/0
[2026-03-02 20:38:48] 2026-03-02 19:37:46,539 | INFO     | sufficient remaining disk space (226288992256 B)
[2026-03-02 20:38:48] 2026-03-02 19:37:46,539 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 20:38:48] 2026-03-02 19:37:46,540 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 20:38:48] 2026-03-02 19:37:46,540 | INFO     | update_server=False
[2026-03-02 20:38:48] 2026-03-02 19:37:46,540 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 20:38:48] 2026-03-02 19:37:46,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 20:38:48] 2026-03-02 19:37:46,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 20:38:48] 2026-03-02 19:37:46,540 | INFO     | aborting loop
[2026-03-02 20:38:48] 2026-03-02 19:37:47,223 | INFO     | all data control threads have been joined
[2026-03-02 20:38:48] 2026-03-02 19:37:47,396 | INFO     | all job control threads have been joined
[2026-03-02 20:38:48] 2026-03-02 19:37:47,490 | INFO     | all payload control threads have been joined
[2026-03-02 20:38:48] 2026-03-02 19:37:47,545 | INFO     | [job] retrieve thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:47,546 | INFO     | [job] job monitor thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:47,707 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,009 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 20:38:48] 2026-03-02 19:37:48,048 | INFO     | [payload] failed_post thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,144 | INFO     | [job] validate thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,165 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,228 | INFO     | [data] control thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,402 | INFO     | [job] control thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,407 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,483 | INFO     | [data] copytool_in thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,495 | INFO     | [payload] control thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,545 | INFO     | [data] copytool_out thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:48,766 | INFO     | [payload] validate_post thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:49,294 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 20:38:48] 2026-03-02 19:37:50,300 | INFO     | [job] queue monitor thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:52,015 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:37:57,318 | INFO     | job.realtimelogging is not enabled
[2026-03-02 20:38:48] 2026-03-02 19:37:58,323 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 20:38:48] 2026-03-02 19:38:17,664 | INFO     | PID=359280 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 20:38:48] 2026-03-02 19:38:17,665 | INFO     | .. there are 54 such processes running
[2026-03-02 20:38:48] 2026-03-02 19:38:17,665 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 20:38:48] 2026-03-02 19:38:17,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 20:38:48] 2026-03-02 19:38:17,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 20:38:48] 2026-03-02 19:38:42,030 | INFO     | [monitor] cgroup control has ended
[2026-03-02 20:38:48] 2026-03-02 19:38:43,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23083464599360)>', '<ExcThread(monitor, started 23083152803584)>']
[2026-03-02 20:38:48] 2026-03-02 19:38:43,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 20:38:48] 2026-03-02 19:38:43,789 | INFO     | [monitor] control thread has ended
[2026-03-02 20:38:48] 2026-03-02 19:38:48,223 | INFO     | all workflow threads have been joined
[2026-03-02 20:38:48] 2026-03-02 19:38:48,223 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 20:38:48] 2026-03-02 19:38:48,223 | INFO     | traces error code: 0
[2026-03-02 20:38:48] 2026-03-02 19:38:48,223 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 20:38:48] 2026-03-02 19:38:48,382 [wrapper] ==== pilot stdout END ====
[2026-03-02 20:38:48] 2026-03-02 19:38:48,384 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 20:38:48] 2026-03-02 19:38:48,386 [wrapper] pilotpid: 359280
[2026-03-02 20:38:48] 2026-03-02 19:38:48,388 [wrapper] Pilot exit status: 0
[2026-03-02 20:38:48] 2026-03-02 19:38:48,394 [wrapper] pandaids: 7037142492
[2026-03-02 20:38:48] 2026-03-02 19:38:48,498 [wrapper] cleanup supervisor_pilot 1321902 359292
[2026-03-02 20:38:48] 2026-03-02 19:38:48,500 [wrapper] Test setup, not cleaning
[2026-03-02 20:38:48] 2026-03-02 19:38:48,502 [wrapper] apfmon messages muted
[2026-03-02 20:38:48] 2026-03-02 19:38:48,504 [wrapper] ==== wrapper stdout END ====
[2026-03-02 20:38:48] 2026-03-02 19:38:48,505 [wrapper] ==== wrapper stderr END ====
[2026-03-02 20:38:48]  *** Error codes and diagnostics ***
[2026-03-02 20:38:48]     "exeErrorCode": 0,
[2026-03-02 20:38:48]     "exeErrorDiag": "",
[2026-03-02 20:38:48]     "pilotErrorCode": 0,
[2026-03-02 20:38:48]     "pilotErrorDiag": "",
[2026-03-02 20:38:48]  *** Listing of results directory ***
[2026-03-02 20:38:48] total 440416
[2026-03-02 20:38:48] -rwx------. 1 boinc boinc     36322 Mar  2 16:03 runpilot2-wrapper.sh
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc      5111 Mar  2 16:04 queuedata.json
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc    584627 Mar  2 16:05 pilot3.tar.gz
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc       100 Mar  2 19:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 20:38:48] -rwxr-xr-x. 1 boinc boinc      7986 Mar  2 19:13 run_atlas
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc       105 Mar  2 19:13 job.xml
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc      6699 Mar  2 19:14 init_data.xml
[2026-03-02 20:38:48] -rw-r--r--. 2 boinc boinc 260798430 Mar  2 19:14 EVNT.48564554._000002.pool.root.1
[2026-03-02 20:38:48] -rw-r--r--. 2 boinc boinc     15845 Mar  2 19:14 start_atlas.sh
[2026-03-02 20:38:48] drwxrwx--x. 2 boinc boinc      4096 Mar  2 19:14 shared
[2026-03-02 20:38:48] -rw-r--r--. 2 boinc boinc    597948 Mar  2 19:14 input.tar.gz
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc         0 Mar  2 19:14 boinc_lockfile
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc      2546 Mar  2 19:14 pandaJob.out
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc    998478 Mar  2 19:14 agis_schedconf.cvmfs.json
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc   1512931 Mar  2 19:14 agis_ddmendpoints.agis.ALL.json
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc       444 Mar  2 19:14 workernode_map.json
[2026-03-02 20:38:48] drwx------. 5 boinc boinc      4096 Mar  2 19:14 pilot3
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc 184260469 Mar  2 20:37 HITS.48936013._000038.pool.root.1
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc       529 Mar  2 20:37 boinc_task_state.xml
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc      1031 Mar  2 20:37 memory_monitor_summary.json
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc    267050 Mar  2 20:37 log.48936013._000038.job.log.tgz.1
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc      6344 Mar  2 20:37 heartbeat.json
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc        95 Mar  2 20:38 pilot_heartbeat.json
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc        27 Mar  2 20:38 wrapper_checkpoint.txt
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc      8192 Mar  2 20:38 boinc_mmap_file
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc      4901 Mar  2 20:38 pilotlog.txt
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc    726336 Mar  2 20:38 log.48936013._000038.job.log.1
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc       357 Mar  2 20:38 output.list
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc       620 Mar  2 20:38 runtime_log
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc   1013760 Mar  2 20:38 result.tar.gz
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc      9204 Mar  2 20:38 runtime_log.err
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc       662 Mar  2 20:38 df7KDmAzJH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJvDLDms9oxZm.diag
[2026-03-02 20:38:48] -rw-r--r--. 1 boinc boinc     21312 Mar  2 20:38 stderr.txt
[2026-03-02 20:38:48] HITS file was successfully produced:
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc 184260469 Mar  2 20:37 shared/HITS.pool.root.1
[2026-03-02 20:38:48]  *** Contents of shared directory: ***
[2026-03-02 20:38:48] total 436236
[2026-03-02 20:38:48] -rw-r--r--. 2 boinc boinc 260798430 Mar  2 19:14 ATLAS.root_0
[2026-03-02 20:38:48] -rw-r--r--. 2 boinc boinc     15845 Mar  2 19:14 start_atlas.sh
[2026-03-02 20:38:48] -rw-r--r--. 2 boinc boinc    597948 Mar  2 19:14 input.tar.gz
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc 184260469 Mar  2 20:37 HITS.pool.root.1
[2026-03-02 20:38:48] -rw-------. 1 boinc boinc   1013760 Mar  2 20:38 result.tar.gz
20:38:49 (79976): run_atlas exited; CPU time 19206.790800
20:38:49 (79976): called boinc_finish(0)

</stderr_txt>
]]>

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