Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:12:31 (75425): wrapper (7.7.26015): starting
19:12:31 (75425): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 19:12:31] Arguments: --nthreads 4
[2026-03-02 19:12:31] Threads: 4
[2026-03-02 19:12:31] Checking for CVMFS
[2026-03-02 19:12:31] No cvmfs_config command found, will try listing directly
[2026-03-02 19:12:31] CVMFS is ok
[2026-03-02 19:12:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 19:12:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 19:12:31] Further information can be found at the LHC@home message board.
[2026-03-02 19:12:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 19:12:31] Checking for apptainer binary...
[2026-03-02 19:12:31] which: no apptainer in ((null))
[2026-03-02 19:12:31] apptainer is not installed, using version from CVMFS
[2026-03-02 19:12:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 19:12:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-02 19:12:31] apptainer works
[2026-03-02 19:12:31] Set ATHENA_PROC_NUMBER=4
[2026-03-02 19:12:31] Set ATHENA_CORE_NUMBER=4
[2026-03-02 19:12:31] Starting ATLAS job with PandaID=7037142418
[2026-03-02 19:12:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 20:36:01]  *** The last 200 lines of the pilot log: ***
[2026-03-02 20:36:01]  surl=/var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/log.48935992._000191.job.log.tgz.1
[2026-03-02 20:36:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/48/log.48935992._000191.job.log.tgz.1
[2026-03-02 20:36:01]  workdir=None
[2026-03-02 20:36:01] ]
[2026-03-02 20:36:01] 2026-03-02 19:35:00,900 | INFO     | transferring file log.48935992._000191.job.log.tgz.1 from /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/log.48935992._000191.job.log.tgz.1 to /var/lib/
[2026-03-02 20:36:01] 2026-03-02 19:35:00,902 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/log.48935992._000191.job.log.tgz.1 /var/lib/boinc/var/slot124/slots/0/
[2026-03-02 20:36:01] 2026-03-02 19:35:00,918 | INFO     | adding to output.list: log.48935992._000191.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/48/log.48935992._000191.job.log.tg
[2026-03-02 20:36:01] 2026-03-02 19:35:00,918 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-02 20:36:01] 2026-03-02 19:35:00,918 | INFO     | summary of transferred files:
[2026-03-02 20:36:01] 2026-03-02 19:35:00,918 | INFO     |  -- lfn=log.48935992._000191.job.log.tgz.1, status_code=0, status=transferred
[2026-03-02 20:36:01] 2026-03-02 19:35:00,918 | INFO     | stage-out finished correctly
[2026-03-02 20:36:01] 2026-03-02 19:35:01,710 | WARNING  | process 729491 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 20:36:01] 2026-03-02 19:35:01,710 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 20:36:01] 2026-03-02 19:35:01,710 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 20:36:01] 2026-03-02 19:35:01,710 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-02 20:36:01] 2026-03-02 19:35:01,710 | WARNING  | maxPSS not found in memory monitor output
[2026-03-02 20:36:01] 2026-03-02 19:35:01,711 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2515143 B
[2026-03-02 20:36:01] 2026-03-02 19:35:01,711 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15841 B
[2026-03-02 20:36:01] 2026-03-02 19:35:01,711 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-03-02 20:36:01] 2026-03-02 19:35:01,722 | INFO     | sufficient remaining disk space (230388924416 B)
[2026-03-02 20:36:01] 2026-03-02 19:35:01,722 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-02 20:36:01] 2026-03-02 19:35:01,723 | INFO     | size of work directory /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418: 2816097 B (within 5033164800 B limit)
[2026-03-02 20:36:01] 2026-03-02 19:35:01,723 | INFO     | pfn file=/var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/HITS.48935992._000191.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-02 20:36:01] 2026-03-02 19:35:01,723 | INFO     | total size of present files: 0 B (workdir size: 2816097 B)
[2026-03-02 20:36:01] 2026-03-02 19:35:01,723 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/HITS.48935992._000191.pool.root.1 since it does not exist
[2026-03-02 20:36:01] 2026-03-02 19:35:02,051 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-02 20:36:01] 2026-03-02 19:35:02,176 | INFO     | number of running child processes to parent process 729491: 1
[2026-03-02 20:36:01] 2026-03-02 19:35:02,179 | INFO     | maximum number of monitored processes: 6
[2026-03-02 20:36:01] 2026-03-02 19:35:02,217 | INFO     | time since job start (4935s) is within the limit (349056.0s)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,650 | INFO     | job 7037142418 has state=finished
[2026-03-02 20:36:01] 2026-03-02 19:35:02,650 | INFO     | preparing for final server update for job 7037142418 in state='finished'
[2026-03-02 20:36:01] 2026-03-02 19:35:02,650 | INFO     | reading metadata from: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/jobReport.json
[2026-03-02 20:36:01] 2026-03-02 19:35:02,651 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot124/slots/0/workernode_map.json
[2026-03-02 20:36:01] 2026-03-02 19:35:02,652 | INFO     | this job has now completed (state=finished)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,652 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,652 | INFO     | log transfer has been attempted: DONE
[2026-03-02 20:36:01] 2026-03-02 19:35:02,652 | INFO     | job 7037142418 has finished - writing final server update
[2026-03-02 20:36:01] 2026-03-02 19:35:02,652 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_19255/.job.ad'
[2026-03-02 20:36:01] 2026-03-02 19:35:02,652 | INFO     | total number of processed events: 400 (read)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,669 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7037142418/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,669 | INFO     | extracted standard info from prmon json
[2026-03-02 20:36:01] 2026-03-02 19:35:02,669 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 20:36:01] 2026-03-02 19:35:02,669 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 20:36:01] 2026-03-02 19:35:02,669 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 20:36:01] 2026-03-02 19:35:02,670 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | fitting pss+swap vs Time
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | sum of square deviations: 125630262.5
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | sum of deviations: 1076379343.0
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | mean x: 1772477736.5
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | mean y: 2345435.2972972975
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | intersect: -15183951110.855324
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | chi2: 0.0002526654290581669
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | current memory leak: 8.57 B/s (using 74 data points, chi2=0.00)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | could have reported an average CPU frequency of 4423 MHz (6 samples)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | ..............................
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | . Timing measurements:
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | . get job = 0 s
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | . initial setup = 5 s
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | . payload setup = 9 s
[2026-03-02 20:36:01] 2026-03-02 19:35:02,671 | INFO     | . stage-in = 0 s
[2026-03-02 20:36:01] 2026-03-02 19:35:02,672 | INFO     | . payload execution = 4909 s
[2026-03-02 20:36:01] 2026-03-02 19:35:02,672 | INFO     | . stage-out = 0 s
[2026-03-02 20:36:01] 2026-03-02 19:35:02,672 | INFO     | . log creation = 0 s
[2026-03-02 20:36:01] 2026-03-02 19:35:02,672 | INFO     | ..............................
[2026-03-02 20:36:01] 2026-03-02 19:35:02,718 | INFO     | 
[2026-03-02 20:36:01] 2026-03-02 19:35:02,718 | INFO     | job summary report
[2026-03-02 20:36:01] 2026-03-02 19:35:02,718 | INFO     | --------------------------------------------------
[2026-03-02 20:36:01] 2026-03-02 19:35:02,718 | INFO     | PanDA job id: 7037142418
[2026-03-02 20:36:01] 2026-03-02 19:35:02,718 | INFO     | task id: 48935992
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | errors: (none)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | pilot state: finished 
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | transexitcode: 0
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | exeerrorcode: 0
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | exeerrordiag: 
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | exitcode: 0
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | exitmsg: OK
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | cpuconsumptiontime: 18662 s
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | nevents: 400
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | neventsw: 0
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | pid: 729491
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | pgrp: 729491
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | corecount: 4
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | event service: False
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | sizes: {0: 2282251, 10: 2282251, 4922: 2308454, 4923: 2317476, 4924: 2317754}
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | --------------------------------------------------
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | 
[2026-03-02 20:36:01] 2026-03-02 19:35:02,719 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot124/slots/0
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 20:36:01] 2026-03-02 19:35:02,735 | INFO     | job 7037142418 has completed (purged errors)
[2026-03-02 20:36:01] 2026-03-02 19:35:02,736 | INFO     | overall cleanup function is called
[2026-03-02 20:36:01] 2026-03-02 19:35:03,742 | INFO     | --- collectZombieJob: --- 10, [729491]
[2026-03-02 20:36:01] 2026-03-02 19:35:03,742 | INFO     | zombie collector waiting for pid 729491
[2026-03-02 20:36:01] 2026-03-02 19:35:03,742 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 20:36:01] 2026-03-02 19:35:03,742 | INFO     | collected zombie processes
[2026-03-02 20:36:01] 2026-03-02 19:35:03,743 | INFO     | will attempt to kill all subprocesses of pid=729491
[2026-03-02 20:36:01] 2026-03-02 19:35:04,148 | INFO     | process IDs to be killed: [729491] (in reverse order)
[2026-03-02 20:36:01] 2026-03-02 19:35:04,329 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 20:36:01] 2026-03-02 19:35:04,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 20:36:01] 2026-03-02 19:35:04,356 | INFO     | did not find any defunct processes belonging to 729491
[2026-03-02 20:36:01] 2026-03-02 19:35:04,381 | INFO     | did not find any defunct processes belonging to 729491
[2026-03-02 20:36:01] 2026-03-02 19:35:04,381 | INFO     | ready for new job
[2026-03-02 20:36:01] 2026-03-02 19:35:04,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 20:36:01] 2026-03-02 19:35:04,383 | INFO     | **************************************
[2026-03-02 20:36:01] 2026-03-02 19:35:04,383 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 20:36:01] 2026-03-02 19:35:04,383 | INFO     | **************************************
[2026-03-02 20:36:01] 2026-03-02 19:35:04,383 | INFO     | 
[2026-03-02 20:36:01] 2026-03-02 19:35:04,388 | INFO     | architecture information:
[2026-03-02 20:36:01] 2026-03-02 19:35:04,389 | INFO     | executing command: cat /etc/os-release
[2026-03-02 20:36:01] 2026-03-02 19:35:04,398 | INFO     | cat /etc/os-release:
[2026-03-02 20:36:01] NAME="CentOS Linux"
[2026-03-02 20:36:01] VERSION="7 (Core)"
[2026-03-02 20:36:01] ID="centos"
[2026-03-02 20:36:01] ID_LIKE="rhel fedora"
[2026-03-02 20:36:01] VERSION_ID="7"
[2026-03-02 20:36:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 20:36:01] ANSI_COLOR="0;31"
[2026-03-02 20:36:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 20:36:01] HOME_URL="https://www.centos.org/"
[2026-03-02 20:36:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 20:36:01] 
[2026-03-02 20:36:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 20:36:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 20:36:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 20:36:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 20:36:01] 
[2026-03-02 20:36:01] 2026-03-02 19:35:04,398 | INFO     | **************************************
[2026-03-02 20:36:01] 2026-03-02 19:35:04,901 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-03-02 20:36:01] 2026-03-02 19:35:04,913 | INFO     | sufficient remaining disk space (230655262720 B)
[2026-03-02 20:36:01] 2026-03-02 19:35:04,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 20:36:01] 2026-03-02 19:35:04,914 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 20:36:01] 2026-03-02 19:35:04,914 | INFO     | update_server=False
[2026-03-02 20:36:01] 2026-03-02 19:35:04,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 20:36:01] 2026-03-02 19:35:04,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 20:36:01] 2026-03-02 19:35:05,111 | INFO     | all data control threads have been joined
[2026-03-02 20:36:01] 2026-03-02 19:35:05,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 20:36:01] 2026-03-02 19:35:05,687 | INFO     | aborting loop
[2026-03-02 20:36:01] 2026-03-02 19:35:05,919 | INFO     | [job] retrieve thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:05,954 | INFO     | [payload] validate_post thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:06,080 | INFO     | all payload control threads have been joined
[2026-03-02 20:36:01] 2026-03-02 19:35:06,114 | INFO     | [data] control thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:06,473 | INFO     | all job control threads have been joined
[2026-03-02 20:36:01] 2026-03-02 19:35:06,693 | INFO     | [job] job monitor thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:06,790 | INFO     | [job] validate thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:06,809 | INFO     | [payload] failed_post thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:06,861 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:06,920 | INFO     | [data] copytool_out thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:07,079 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:07,085 | INFO     | [payload] control thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:07,205 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:07,234 | INFO     | [data] copytool_in thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:07,478 | INFO     | [job] control thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:07,729 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 20:36:01] 2026-03-02 19:35:08,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 20:36:01] 2026-03-02 19:35:08,734 | INFO     | [job] queue monitor thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:12,107 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:15,739 | INFO     | job.realtimelogging is not enabled
[2026-03-02 20:36:01] 2026-03-02 19:35:16,745 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 20:36:01] 2026-03-02 19:35:35,777 | INFO     | PID=325038 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 20:36:01] 2026-03-02 19:35:35,778 | INFO     | .. there are 54 such processes running
[2026-03-02 20:36:01] 2026-03-02 19:35:35,778 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 20:36:01] 2026-03-02 19:35:35,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 20:36:01] 2026-03-02 19:35:35,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 20:36:01] 2026-03-02 19:35:55,670 | INFO     | [monitor] cgroup control has ended
[2026-03-02 20:36:01] 2026-03-02 19:35:56,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23375681050432)>', '<ExcThread(monitor, started 23375442622208)>']
[2026-03-02 20:36:01] 2026-03-02 19:35:56,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 20:36:01] 2026-03-02 19:35:56,877 | INFO     | [monitor] control thread has ended
[2026-03-02 20:36:01] 2026-03-02 19:36:01,338 | INFO     | all workflow threads have been joined
[2026-03-02 20:36:01] 2026-03-02 19:36:01,338 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 20:36:01] 2026-03-02 19:36:01,338 | INFO     | traces error code: 0
[2026-03-02 20:36:01] 2026-03-02 19:36:01,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 20:36:01] 2026-03-02 19:36:01,524 [wrapper] ==== pilot stdout END ====
[2026-03-02 20:36:01] 2026-03-02 19:36:01,525 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 20:36:01] 2026-03-02 19:36:01,527 [wrapper] pilotpid: 325038
[2026-03-02 20:36:01] 2026-03-02 19:36:01,528 [wrapper] Pilot exit status: 0
[2026-03-02 20:36:01] 2026-03-02 19:36:01,534 [wrapper] pandaids: 7037142418
[2026-03-02 20:36:01] 2026-03-02 19:36:01,641 [wrapper] cleanup supervisor_pilot 1422266 325042
[2026-03-02 20:36:01] 2026-03-02 19:36:01,643 [wrapper] Test setup, not cleaning
[2026-03-02 20:36:01] 2026-03-02 19:36:01,645 [wrapper] apfmon messages muted
[2026-03-02 20:36:01] 2026-03-02 19:36:01,647 [wrapper] ==== wrapper stdout END ====
[2026-03-02 20:36:01] 2026-03-02 19:36:01,649 [wrapper] ==== wrapper stderr END ====
[2026-03-02 20:36:01]  *** Error codes and diagnostics ***
[2026-03-02 20:36:01]     "exeErrorCode": 0,
[2026-03-02 20:36:01]     "exeErrorDiag": "",
[2026-03-02 20:36:01]     "pilotErrorCode": 0,
[2026-03-02 20:36:01]     "pilotErrorDiag": "",
[2026-03-02 20:36:01]  *** Listing of results directory ***
[2026-03-02 20:36:01] total 448168
[2026-03-02 20:36:01] -rwx------. 1 boinc boinc     36322 Mar  2 16:03 runpilot2-wrapper.sh
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc      5111 Mar  2 16:04 queuedata.json
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc    584627 Mar  2 16:05 pilot3.tar.gz
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc       100 Mar  2 19:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 20:36:01] -rwxr-xr-x. 1 boinc boinc      7986 Mar  2 19:12 run_atlas
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc       105 Mar  2 19:12 job.xml
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc      6701 Mar  2 19:12 init_data.xml
[2026-03-02 20:36:01] -rw-r--r--. 2 boinc boinc 262919639 Mar  2 19:12 EVNT.48564533._000008.pool.root.1
[2026-03-02 20:36:01] -rw-r--r--. 2 boinc boinc     15845 Mar  2 19:12 start_atlas.sh
[2026-03-02 20:36:01] drwxrwx--x. 2 boinc boinc      4096 Mar  2 19:12 shared
[2026-03-02 20:36:01] -rw-r--r--. 2 boinc boinc    597958 Mar  2 19:12 input.tar.gz
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc         0 Mar  2 19:12 boinc_lockfile
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc      2543 Mar  2 19:12 pandaJob.out
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc    998486 Mar  2 19:12 agis_schedconf.cvmfs.json
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc   1512931 Mar  2 19:12 agis_ddmendpoints.agis.ALL.json
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc       444 Mar  2 19:12 workernode_map.json
[2026-03-02 20:36:01] drwx------. 5 boinc boinc      4096 Mar  2 19:12 pilot3
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc 190079131 Mar  2 20:34 HITS.48935992._000191.pool.root.1
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc       529 Mar  2 20:34 boinc_task_state.xml
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc      1030 Mar  2 20:34 memory_monitor_summary.json
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc    272530 Mar  2 20:35 log.48935992._000191.job.log.tgz.1
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc      6342 Mar  2 20:35 heartbeat.json
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc        95 Mar  2 20:35 pilot_heartbeat.json
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc      8192 Mar  2 20:35 boinc_mmap_file
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc        27 Mar  2 20:36 wrapper_checkpoint.txt
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc      4902 Mar  2 20:36 pilotlog.txt
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc    721350 Mar  2 20:36 log.48935992._000191.job.log.1
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc       357 Mar  2 20:36 output.list
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc       620 Mar  2 20:36 runtime_log
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc   1013760 Mar  2 20:36 result.tar.gz
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc      9221 Mar  2 20:36 runtime_log.err
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc       661 Mar  2 20:36 dyNODm9yJH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmluDLDmI6ZfFo.diag
[2026-03-02 20:36:01] -rw-r--r--. 1 boinc boinc     22483 Mar  2 20:36 stderr.txt
[2026-03-02 20:36:01] HITS file was successfully produced:
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc 190079131 Mar  2 20:34 shared/HITS.pool.root.1
[2026-03-02 20:36:01]  *** Contents of shared directory: ***
[2026-03-02 20:36:01] total 443988
[2026-03-02 20:36:01] -rw-r--r--. 2 boinc boinc 262919639 Mar  2 19:12 ATLAS.root_0
[2026-03-02 20:36:01] -rw-r--r--. 2 boinc boinc     15845 Mar  2 19:12 start_atlas.sh
[2026-03-02 20:36:01] -rw-r--r--. 2 boinc boinc    597958 Mar  2 19:12 input.tar.gz
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc 190079131 Mar  2 20:34 HITS.pool.root.1
[2026-03-02 20:36:01] -rw-------. 1 boinc boinc   1013760 Mar  2 20:36 result.tar.gz
20:36:03 (75425): run_atlas exited; CPU time 18829.911603
20:36:03 (75425): called boinc_finish(0)

</stderr_txt>
]]>

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