Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:45:52 (774062): wrapper (7.7.26015): starting
15:45:52 (774062): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 15:45:52] Arguments: --nthreads 3
[2026-03-02 15:45:52] Threads: 3
[2026-03-02 15:45:52] Checking for CVMFS
[2026-03-02 15:45:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 15:45:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 15:45:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 15:45:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 15:45:53] 2.9.2.0 2927 5631 81608 156809 1 50 5713768 36864000 0 130560 0 2169523 99.981 207414 13266 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 15:45:53] CVMFS is ok
[2026-03-02 15:45:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 15:45:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 15:45:53] Further information can be found at the LHC@home message board.
[2026-03-02 15:45:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 15:45:53] Checking for apptainer binary...
[2026-03-02 15:45:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 15:45:53] Running /usr/bin/apptainer --version
[2026-03-02 15:45:53] apptainer version 1.4.1-1.1
[2026-03-02 15:45:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 15:45:53] belleA259
[2026-03-02 15:45:53] apptainer works
[2026-03-02 15:45:53] Set ATHENA_PROC_NUMBER=3
[2026-03-02 15:45:53] Set ATHENA_CORE_NUMBER=3
[2026-03-02 15:45:53] Starting ATLAS job with PandaID=7035976102
[2026-03-02 15:45:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 17:26:17]  *** The last 200 lines of the pilot log: ***
[2026-03-02 17:26:17] 2026-03-02 16:26:03,527 | INFO     | overall cleanup function is called
[2026-03-02 17:26:17] 2026-03-02 16:26:04,534 | INFO     | --- collectZombieJob: --- 10, [782543]
[2026-03-02 17:26:17] 2026-03-02 16:26:04,534 | INFO     | zombie collector waiting for pid 782543
[2026-03-02 17:26:17] 2026-03-02 16:26:04,534 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 17:26:17] 2026-03-02 16:26:04,534 | INFO     | collected zombie processes
[2026-03-02 17:26:17] 2026-03-02 16:26:04,534 | INFO     | will attempt to kill all subprocesses of pid=782543
[2026-03-02 17:26:17] 2026-03-02 16:26:04,574 | INFO     | process IDs to be killed: [782543] (in reverse order)
[2026-03-02 17:26:17] 2026-03-02 16:26:04,600 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 17:26:17] 2026-03-02 16:26:04,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 17:26:17] 2026-03-02 16:26:04,601 | INFO     | did not find any defunct processes belonging to 782543
[2026-03-02 17:26:17] 2026-03-02 16:26:04,602 | INFO     | did not find any defunct processes belonging to 782543
[2026-03-02 17:26:17] 2026-03-02 16:26:04,602 | INFO     | ready for new job
[2026-03-02 17:26:17] 2026-03-02 16:26:04,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 17:26:17] 2026-03-02 16:26:04,603 | INFO     | **************************************
[2026-03-02 17:26:17] 2026-03-02 16:26:04,603 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 17:26:17] 2026-03-02 16:26:04,603 | INFO     | **************************************
[2026-03-02 17:26:17] 2026-03-02 16:26:04,603 | INFO     | 
[2026-03-02 17:26:17] 2026-03-02 16:26:04,604 | INFO     | architecture information:
[2026-03-02 17:26:17] 2026-03-02 16:26:04,604 | INFO     | executing command: cat /etc/os-release
[2026-03-02 17:26:17] 2026-03-02 16:26:04,613 | INFO     | cat /etc/os-release:
[2026-03-02 17:26:17] NAME="CentOS Linux"
[2026-03-02 17:26:17] VERSION="7 (Core)"
[2026-03-02 17:26:17] ID="centos"
[2026-03-02 17:26:17] ID_LIKE="rhel fedora"
[2026-03-02 17:26:17] VERSION_ID="7"
[2026-03-02 17:26:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 17:26:17] ANSI_COLOR="0;31"
[2026-03-02 17:26:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 17:26:17] HOME_URL="https://www.centos.org/"
[2026-03-02 17:26:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 17:26:17] 
[2026-03-02 17:26:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 17:26:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 17:26:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 17:26:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 17:26:17] 
[2026-03-02 17:26:17] 2026-03-02 16:26:04,613 | INFO     | **************************************
[2026-03-02 17:26:17] 2026-03-02 16:26:05,117 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 17:26:17] 2026-03-02 16:26:05,130 | INFO     | sufficient remaining disk space (356003086336 B)
[2026-03-02 17:26:17] 2026-03-02 16:26:05,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 17:26:17] 2026-03-02 16:26:05,130 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 17:26:17] 2026-03-02 16:26:05,130 | INFO     | update_server=False
[2026-03-02 17:26:17] 2026-03-02 16:26:05,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 17:26:17] 2026-03-02 16:26:05,131 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 17:26:17] 2026-03-02 16:26:05,131 | INFO     | aborting loop
[2026-03-02 17:26:17] 2026-03-02 16:26:05,131 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-02 17:26:17] 2026-03-02 16:26:05,131 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 17:26:17] 2026-03-02 16:26:05,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 17:26:17] 2026-03-02 16:26:05,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 17:26:17] 2026-03-02 16:26:05,156 | INFO     | all data control threads have been joined
[2026-03-02 17:26:17] 2026-03-02 16:26:05,318 | INFO     | all payload control threads have been joined
[2026-03-02 17:26:17] 2026-03-02 16:26:05,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 17:26:17] 2026-03-02 16:26:06,136 | INFO     | [job] job monitor thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,137 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,137 | INFO     | [job] retrieve thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,161 | INFO     | [data] control thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,164 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,164 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,179 | INFO     | all job control threads have been joined
[2026-03-02 17:26:17] 2026-03-02 16:26:06,295 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,319 | INFO     | [data] copytool_in thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,324 | INFO     | [payload] control thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:06,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 17:26:17] 2026-03-02 16:26:06,781 | INFO     | [payload] validate_post thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:07,184 | INFO     | [job] control thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:07,525 | INFO     | [job] validate thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:07,659 | INFO     | [payload] failed_post thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:07,833 | INFO     | [data] copytool_out thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:08,072 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 17:26:17] 2026-03-02 16:26:09,077 | INFO     | [job] queue monitor thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:10,478 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 17:26:17] 2026-03-02 16:26:11,432 | INFO     | [monitor] cgroup control has ended
[2026-03-02 17:26:17] 2026-03-02 16:26:12,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148542154560)>', '<ExcThread(monitor, started 140148062807808)>']
[2026-03-02 17:26:17] 2026-03-02 16:26:13,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 17:26:17] 2026-03-02 16:26:13,172 | INFO     | [monitor] control thread has ended
[2026-03-02 17:26:17] 2026-03-02 16:26:17,665 | INFO     | all workflow threads have been joined
[2026-03-02 17:26:17] 2026-03-02 16:26:17,665 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 17:26:17] 2026-03-02 16:26:17,665 | INFO     | traces error code: 0
[2026-03-02 17:26:17] 2026-03-02 16:26:17,665 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 17:26:17] 2026-03-02 16:26:17,714 [wrapper] ==== pilot stdout END ====
[2026-03-02 17:26:17] 2026-03-02 16:26:17,716 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 17:26:17] 2026-03-02 16:26:17,719 [wrapper] pilotpid: 778121
[2026-03-02 17:26:17] 2026-03-02 16:26:17,721 [wrapper] Pilot exit status: 0
[2026-03-02 17:26:17] 2026-03-02 16:26:17,729 [wrapper] pandaids: 7035976102
[2026-03-02 17:26:17] 2026-03-02 16:26:17,746 [wrapper] cleanup supervisor_pilot  788012 778122
[2026-03-02 17:26:17] 2026-03-02 16:26:17,748 [wrapper] Test setup, not cleaning
[2026-03-02 17:26:17] 2026-03-02 16:26:17,751 [wrapper] apfmon messages muted
[2026-03-02 17:26:17] 2026-03-02 16:26:17,753 [wrapper] ==== wrapper stdout END ====
[2026-03-02 17:26:17] 2026-03-02 16:26:17,755 [wrapper] ==== wrapper stderr END ====
[2026-03-02 17:26:17]  *** Error codes and diagnostics ***
[2026-03-02 17:26:17]     "exeErrorCode": 0,
[2026-03-02 17:26:17]     "exeErrorDiag": "",
[2026-03-02 17:26:17]     "pilotErrorCode": 0,
[2026-03-02 17:26:17]     "pilotErrorDiag": "",
[2026-03-02 17:26:17]  *** Listing of results directory ***
[2026-03-02 17:26:17] total 507676
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc    584627 Mar  2 11:57 pilot3.tar.gz
[2026-03-02 17:26:17] -rwx------ 1 boinc boinc     36322 Mar  2 12:00 runpilot2-wrapper.sh
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc      5111 Mar  2 12:02 queuedata.json
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc       100 Mar  2 15:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 17:26:17] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 15:45 run_atlas
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc       105 Mar  2 15:45 job.xml
[2026-03-02 17:26:17] -rw-r--r-- 2 boinc boinc 286258236 Mar  2 15:45 EVNT.48220101._000242.pool.root.1
[2026-03-02 17:26:17] -rw-r--r-- 2 boinc boinc    597974 Mar  2 15:45 input.tar.gz
[2026-03-02 17:26:17] -rw-r--r-- 2 boinc boinc     15845 Mar  2 15:45 start_atlas.sh
[2026-03-02 17:26:17] drwxrwx--x 2 boinc boinc      4096 Mar  2 15:45 shared
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc         0 Mar  2 15:45 boinc_setup_complete
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc      6445 Mar  2 15:45 init_data.xml
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc         0 Mar  2 15:45 boinc_lockfile
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc      2580 Mar  2 15:45 pandaJob.out
[2026-03-02 17:26:17] -rw------- 1 boinc boinc    998107 Mar  2 15:46 agis_schedconf.cvmfs.json
[2026-03-02 17:26:17] -rw------- 1 boinc boinc   1512931 Mar  2 15:46 agis_ddmendpoints.agis.ALL.json
[2026-03-02 17:26:17] -rw------- 1 boinc boinc       426 Mar  2 15:46 workernode_map.json
[2026-03-02 17:26:17] drwx------ 5 boinc boinc      4096 Mar  2 15:46 pilot3
[2026-03-02 17:26:17] -rw------- 1 boinc boinc        95 Mar  2 17:25 pilot_heartbeat.json
[2026-03-02 17:26:17] -rw------- 1 boinc boinc 227387794 Mar  2 17:25 HITS.48838432._006401.pool.root.1
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc       529 Mar  2 17:25 boinc_task_state.xml
[2026-03-02 17:26:17] -rw------- 1 boinc boinc      1011 Mar  2 17:25 memory_monitor_summary.json
[2026-03-02 17:26:17] -rw------- 1 boinc boinc    278783 Mar  2 17:25 log.48838432._006401.job.log.tgz.1
[2026-03-02 17:26:17] -rw------- 1 boinc boinc      6295 Mar  2 17:26 heartbeat.json
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc        27 Mar  2 17:26 wrapper_checkpoint.txt
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc      8192 Mar  2 17:26 boinc_mmap_file
[2026-03-02 17:26:17] -rw------- 1 boinc boinc      4552 Mar  2 17:26 pilotlog.txt
[2026-03-02 17:26:17] -rw------- 1 boinc boinc    868153 Mar  2 17:26 log.48838432._006401.job.log.1
[2026-03-02 17:26:17] -rw------- 1 boinc boinc       357 Mar  2 17:26 output.list
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc       620 Mar  2 17:26 runtime_log
[2026-03-02 17:26:17] -rw------- 1 boinc boinc   1167360 Mar  2 17:26 result.tar.gz
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc      8911 Mar  2 17:26 runtime_log.err
[2026-03-02 17:26:17] -rw------- 1 boinc boinc       660 Mar  2 17:26 UcUKDm3BGH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQHDLDm96Vbwn.diag
[2026-03-02 17:26:17] -rw-r--r-- 1 boinc boinc     10616 Mar  2 17:26 stderr.txt
[2026-03-02 17:26:17] HITS file was successfully produced:
[2026-03-02 17:26:17] -rw------- 1 boinc boinc 227387794 Mar  2 17:25 shared/HITS.pool.root.1
[2026-03-02 17:26:17]  *** Contents of shared directory: ***
[2026-03-02 17:26:17] total 503360
[2026-03-02 17:26:17] -rw-r--r-- 2 boinc boinc 286258236 Mar  2 15:45 ATLAS.root_0
[2026-03-02 17:26:17] -rw-r--r-- 2 boinc boinc    597974 Mar  2 15:45 input.tar.gz
[2026-03-02 17:26:17] -rw-r--r-- 2 boinc boinc     15845 Mar  2 15:45 start_atlas.sh
[2026-03-02 17:26:17] -rw------- 1 boinc boinc 227387794 Mar  2 17:25 HITS.pool.root.1
[2026-03-02 17:26:17] -rw------- 1 boinc boinc   1167360 Mar  2 17:26 result.tar.gz
17:26:18 (774062): run_atlas exited; CPU time 17192.691277
17:26:18 (774062): called boinc_finish(0)

</stderr_txt>
]]>

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