Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:46:42 (3538230): wrapper (7.7.26015): starting
07:46:42 (3538230): wrapper: running run_atlas (--nthreads 3)
[2026-03-03 07:46:42] Arguments: --nthreads 3
[2026-03-03 07:46:42] Threads: 3
[2026-03-03 07:46:42] Checking for CVMFS
[2026-03-03 07:46:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 07:46:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 07:46:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 07:46:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 07:46:42] 2.9.2.0 2437992 8123 85868 156835 2 50 28500906 36864001 0 130560 0 3102866 99.980 314304 15223 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 07:46:42] CVMFS is ok
[2026-03-03 07:46:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 07:46:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 07:46:42] Further information can be found at the LHC@home message board.
[2026-03-03 07:46:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 07:46:42] Checking for apptainer binary...
[2026-03-03 07:46:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 07:46:42] Running /usr/bin/apptainer --version
[2026-03-03 07:46:42] apptainer version 1.4.1-1.1
[2026-03-03 07:46:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 07:46:42] atlasA303a
[2026-03-03 07:46:42] apptainer works
[2026-03-03 07:46:42] Set ATHENA_PROC_NUMBER=3
[2026-03-03 07:46:42] Set ATHENA_CORE_NUMBER=3
[2026-03-03 07:46:42] Starting ATLAS job with PandaID=7036000460
[2026-03-03 07:46:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:30:09]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:30:09] 2026-03-03 09:29:29,116 | INFO     | did not find any defunct processes belonging to 3546694
[2026-03-03 10:30:09] 2026-03-03 09:29:29,116 | INFO     | ready for new job
[2026-03-03 10:30:09] 2026-03-03 09:29:29,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:30:09] 2026-03-03 09:29:29,117 | INFO     | **************************************
[2026-03-03 10:30:09] 2026-03-03 09:29:29,117 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:30:09] 2026-03-03 09:29:29,117 | INFO     | **************************************
[2026-03-03 10:30:09] 2026-03-03 09:29:29,117 | INFO     | 
[2026-03-03 10:30:09] 2026-03-03 09:29:29,117 | INFO     | architecture information:
[2026-03-03 10:30:09] 2026-03-03 09:29:29,118 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:30:09] 2026-03-03 09:29:29,127 | INFO     | cat /etc/os-release:
[2026-03-03 10:30:09] NAME="CentOS Linux"
[2026-03-03 10:30:09] VERSION="7 (Core)"
[2026-03-03 10:30:09] ID="centos"
[2026-03-03 10:30:09] ID_LIKE="rhel fedora"
[2026-03-03 10:30:09] VERSION_ID="7"
[2026-03-03 10:30:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:30:09] ANSI_COLOR="0;31"
[2026-03-03 10:30:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:30:09] HOME_URL="https://www.centos.org/"
[2026-03-03 10:30:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:30:09] 
[2026-03-03 10:30:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:30:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:30:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:30:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:30:09] 
[2026-03-03 10:30:09] 2026-03-03 09:29:29,127 | INFO     | **************************************
[2026-03-03 10:30:09] 2026-03-03 09:29:29,631 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-03 10:30:09] 2026-03-03 09:29:29,644 | INFO     | sufficient remaining disk space (375705829376 B)
[2026-03-03 10:30:09] 2026-03-03 09:29:29,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:30:09] 2026-03-03 09:29:29,645 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:30:09] 2026-03-03 09:29:29,645 | INFO     | update_server=False
[2026-03-03 10:30:09] 2026-03-03 09:29:29,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:30:09] 2026-03-03 09:29:29,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:30:09] 2026-03-03 09:29:29,645 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:30:09] 2026-03-03 09:29:29,855 | INFO     | all data control threads have been joined
[2026-03-03 10:30:09] 2026-03-03 09:29:30,328 | INFO     | all job control threads have been joined
[2026-03-03 10:30:09] 2026-03-03 09:29:30,648 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:30,650 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:30,860 | INFO     | [data] control thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:30,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:30:09] 2026-03-03 09:29:31,044 | INFO     | all payload control threads have been joined
[2026-03-03 10:30:09] 2026-03-03 09:29:31,334 | INFO     | [job] control thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:31,336 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:31,401 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:31,581 | INFO     | [job] validate thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:31,616 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:31,658 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:31,833 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:31,836 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:32,050 | INFO     | [payload] control thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:32,976 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:33,229 | WARNING  | process 3546694 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 10:30:09] 2026-03-03 09:29:33,257 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:30:09] 2026-03-03 09:29:33,257 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:30:09] 2026-03-03 09:29:33,257 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-03 10:30:09] 2026-03-03 09:29:33,257 | WARNING  | maxPSS not found in memory monitor output
[2026-03-03 10:30:09] 2026-03-03 09:29:33,257 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7036000460/payload.stdout) since it has not been created yet
[2026-03-03 10:30:09] 2026-03-03 09:29:33,257 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-03 10:30:09] 2026-03-03 09:29:33,268 | INFO     | sufficient remaining disk space (375705829376 B)
[2026-03-03 10:30:09] 2026-03-03 09:29:33,268 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-03 10:30:09] 2026-03-03 09:29:33,269 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7036000460/HITS.48847090._000018.pool.root.1 since it does not exist
[2026-03-03 10:30:09] 2026-03-03 09:29:33,306 | INFO     | number of running child processes to parent process 3546694: 1
[2026-03-03 10:30:09] 2026-03-03 09:29:33,306 | INFO     | maximum number of monitored processes: 6
[2026-03-03 10:30:09] 2026-03-03 09:29:33,306 | INFO     | aborting job monitoring since job object (job id=7036000460) has expired
[2026-03-03 10:30:09] 2026-03-03 09:29:33,306 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:30:09] 2026-03-03 09:29:33,306 | INFO     | will abort loop
[2026-03-03 10:30:09] 2026-03-03 09:29:33,652 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:34,311 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:40,304 | INFO     | job.realtimelogging is not enabled
[2026-03-03 10:30:09] 2026-03-03 09:29:41,309 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:30:09] 2026-03-03 09:29:59,563 | INFO     | PID=3542269 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 10:30:09] 2026-03-03 09:29:59,564 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:30:09] 2026-03-03 09:29:59,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:30:09] 2026-03-03 09:29:59,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:30:09] 2026-03-03 09:30:03,988 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:30:09] 2026-03-03 09:30:04,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139860494144)>', '<ExcThread(monitor, started 140139498018560)>']
[2026-03-03 10:30:09] 2026-03-03 09:30:04,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:30:09] 2026-03-03 09:30:04,589 | INFO     | [monitor] control thread has ended
[2026-03-03 10:30:09] 2026-03-03 09:30:09,488 | INFO     | all workflow threads have been joined
[2026-03-03 10:30:09] 2026-03-03 09:30:09,489 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:30:09] 2026-03-03 09:30:09,489 | INFO     | traces error code: 0
[2026-03-03 10:30:09] 2026-03-03 09:30:09,489 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:30:09] 2026-03-03 09:30:09,540 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:30:09] 2026-03-03 09:30:09,542 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:30:09] 2026-03-03 09:30:09,545 [wrapper] pilotpid: 3542269
[2026-03-03 10:30:09] 2026-03-03 09:30:09,547 [wrapper] Pilot exit status: 0
[2026-03-03 10:30:09] 2026-03-03 09:30:09,555 [wrapper] pandaids: 7036000460
[2026-03-03 10:30:09] 2026-03-03 09:30:09,572 [wrapper] cleanup supervisor_pilot 3552467 3542270
[2026-03-03 10:30:09] 2026-03-03 09:30:09,574 [wrapper] Test setup, not cleaning
[2026-03-03 10:30:09] 2026-03-03 09:30:09,577 [wrapper] apfmon messages muted
[2026-03-03 10:30:09] 2026-03-03 09:30:09,579 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:30:09] 2026-03-03 09:30:09,582 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:30:09]  *** Error codes and diagnostics ***
[2026-03-03 10:30:09]     "exeErrorCode": 0,
[2026-03-03 10:30:09]     "exeErrorDiag": "",
[2026-03-03 10:30:09]     "pilotErrorCode": 0,
[2026-03-03 10:30:09]     "pilotErrorDiag": "",
[2026-03-03 10:30:09]  *** Listing of results directory ***
[2026-03-03 10:30:09] total 452572
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc      5111 Mar  2 14:57 queuedata.json
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc    584627 Mar  2 14:57 pilot3.tar.gz
[2026-03-03 10:30:09] -rwx------ 1 boinc boinc     36322 Mar  2 14:57 runpilot2-wrapper.sh
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc       100 Mar  3 07:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:30:09] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 07:46 run_atlas
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc       105 Mar  3 07:46 job.xml
[2026-03-03 10:30:09] -rw-r--r-- 2 boinc boinc 240594170 Mar  3 07:46 EVNT.48452945._000001.pool.root.1
[2026-03-03 10:30:09] drwxrwx--x 2 boinc boinc      4096 Mar  3 07:46 shared
[2026-03-03 10:30:09] -rw-r--r-- 2 boinc boinc    597956 Mar  3 07:46 input.tar.gz
[2026-03-03 10:30:09] -rw-r--r-- 2 boinc boinc     15845 Mar  3 07:46 start_atlas.sh
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc         0 Mar  3 07:46 boinc_setup_complete
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc      6450 Mar  3 07:46 init_data.xml
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc         0 Mar  3 07:46 boinc_lockfile
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc      2616 Mar  3 07:46 pandaJob.out
[2026-03-03 10:30:09] -rw------- 1 boinc boinc    998412 Mar  3 07:46 agis_schedconf.cvmfs.json
[2026-03-03 10:30:09] -rw------- 1 boinc boinc   1512931 Mar  3 07:46 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:30:09] -rw------- 1 boinc boinc       427 Mar  3 07:46 workernode_map.json
[2026-03-03 10:30:09] drwx------ 5 boinc boinc      4096 Mar  3 07:46 pilot3
[2026-03-03 10:30:09] -rw------- 1 boinc boinc 215478106 Mar  3 10:29 HITS.48847090._000018.pool.root.1
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc       529 Mar  3 10:29 boinc_task_state.xml
[2026-03-03 10:30:09] -rw------- 1 boinc boinc      1014 Mar  3 10:29 memory_monitor_summary.json
[2026-03-03 10:30:09] -rw------- 1 boinc boinc    327835 Mar  3 10:29 log.48847090._000018.job.log.tgz.1
[2026-03-03 10:30:09] -rw------- 1 boinc boinc      6291 Mar  3 10:29 heartbeat.json
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc      8192 Mar  3 10:29 boinc_mmap_file
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc        27 Mar  3 10:29 wrapper_checkpoint.txt
[2026-03-03 10:30:09] -rw------- 1 boinc boinc        95 Mar  3 10:29 pilot_heartbeat.json
[2026-03-03 10:30:09] -rw------- 1 boinc boinc      6321 Mar  3 10:30 pilotlog.txt
[2026-03-03 10:30:09] -rw------- 1 boinc boinc   1392675 Mar  3 10:30 log.48847090._000018.job.log.1
[2026-03-03 10:30:09] -rw------- 1 boinc boinc       357 Mar  3 10:30 output.list
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc       620 Mar  3 10:30 runtime_log
[2026-03-03 10:30:09] -rw------- 1 boinc boinc   1740800 Mar  3 10:30 result.tar.gz
[2026-03-03 10:30:09] -rw------- 1 boinc boinc       661 Mar  3 10:30 wKNLDmixIH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmOUBLDmA46aLm.diag
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc      8916 Mar  3 10:30 runtime_log.err
[2026-03-03 10:30:09] -rw-r--r-- 1 boinc boinc     11523 Mar  3 10:30 stderr.txt
[2026-03-03 10:30:09] HITS file was successfully produced:
[2026-03-03 10:30:09] -rw------- 1 boinc boinc 215478106 Mar  3 10:29 shared/HITS.pool.root.1
[2026-03-03 10:30:09]  *** Contents of shared directory: ***
[2026-03-03 10:30:09] total 447692
[2026-03-03 10:30:09] -rw-r--r-- 2 boinc boinc 240594170 Mar  3 07:46 ATLAS.root_0
[2026-03-03 10:30:09] -rw-r--r-- 2 boinc boinc    597956 Mar  3 07:46 input.tar.gz
[2026-03-03 10:30:09] -rw-r--r-- 2 boinc boinc     15845 Mar  3 07:46 start_atlas.sh
[2026-03-03 10:30:09] -rw------- 1 boinc boinc 215478106 Mar  3 10:29 HITS.pool.root.1
[2026-03-03 10:30:09] -rw------- 1 boinc boinc   1740800 Mar  3 10:30 result.tar.gz
10:30:10 (3538230): run_atlas exited; CPU time 28410.114323
10:30:10 (3538230): called boinc_finish(0)

</stderr_txt>
]]>

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