Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:43:55 (11136): wrapper (7.7.26015): starting
15:43:55 (11136): wrapper: running run_atlas (--nthreads 8)
[2026-03-02 15:43:55] Arguments: --nthreads 8
[2026-03-02 15:43:55] Threads: 8
[2026-03-02 15:43:55] Checking for CVMFS
[2026-03-02 15:43:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 15:43:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 15:43:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 15:43:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 15:43:55] 2.11.0.0 4268 203689 98216 156809 2 1 3802794 4096000 0 130560 2 14651224 99.572 12178415 399 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-02 15:43:55] CVMFS is ok
[2026-03-02 15:43:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 15:43:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 15:43:55] Further information can be found at the LHC@home message board.
[2026-03-02 15:43:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 15:43:55] Checking for apptainer binary...
[2026-03-02 15:43:55] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-02 15:43:55] apptainer is not installed, using version from CVMFS
[2026-03-02 15:43:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 15:43:56] WARNING: Environment variable TMPDIR already has value [/tmp/job_11241204/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node064
[2026-03-02 15:43:56] apptainer works
[2026-03-02 15:43:56] Set ATHENA_PROC_NUMBER=8
[2026-03-02 15:43:56] Set ATHENA_CORE_NUMBER=8
[2026-03-02 15:43:56] Starting ATLAS job with PandaID=7035912049
[2026-03-02 15:43:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11241204/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 17:25:17]  *** The last 200 lines of the pilot log: ***
[2026-03-02 17:25:17]  filetype=log
[2026-03-02 17:25:17]  guid=66bca3be-7815-4610-a0be-14308ef0d32b
[2026-03-02 17:25:17]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-02 17:25:17]  is_altstaged=None
[2026-03-02 17:25:17]  is_tar=False
[2026-03-02 17:25:17]  lfn=log.48844921._000056.job.log.tgz.1
[2026-03-02 17:25:17]  mtime=0
[2026-03-02 17:25:17]  protocol_id=None
[2026-03-02 17:25:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-02 17:25:17]  replicas=None
[2026-03-02 17:25:17]  scope=mc23_13p6TeV
[2026-03-02 17:25:17]  status=None
[2026-03-02 17:25:17]  status_code=0
[2026-03-02 17:25:17]  storage_token=
[2026-03-02 17:25:17]  surl=/tmp/job_11241204/atlas/pilot/slots/0/PanDA_Pilot-7035912049/log.48844921._000056.job.log.tgz.1
[2026-03-02 17:25:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/e5/log.48844921._000056.job.log.tgz.1
[2026-03-02 17:25:17]  workdir=None
[2026-03-02 17:25:17] ]
[2026-03-02 17:25:17] 2026-03-02 16:24:29,393 | INFO     | transferring file log.48844921._000056.job.log.tgz.1 from /tmp/job_11241204/atlas/pilot/slots/0/PanDA_Pilot-7035912049/log.48844921._000056.job.log.tgz.1 to /tmp/j
[2026-03-02 17:25:17] 2026-03-02 16:24:29,393 | INFO     | executing command: /usr/bin/env mv /tmp/job_11241204/atlas/pilot/slots/0/PanDA_Pilot-7035912049/log.48844921._000056.job.log.tgz.1 /tmp/job_11241204/atlas/pilot/sl
[2026-03-02 17:25:17] 2026-03-02 16:24:29,401 | INFO     | adding to output.list: log.48844921._000056.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/e5/log.48844921._000056.job.log.tg
[2026-03-02 17:25:17] 2026-03-02 16:24:29,402 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-02 17:25:17] 2026-03-02 16:24:29,402 | INFO     | summary of transferred files:
[2026-03-02 17:25:17] 2026-03-02 16:24:29,402 | INFO     |  -- lfn=log.48844921._000056.job.log.tgz.1, status_code=0, status=transferred
[2026-03-02 17:25:17] 2026-03-02 16:24:29,402 | INFO     | stage-out finished correctly
[2026-03-02 17:25:17] 2026-03-02 16:24:30,838 | INFO     | monitor loop #451: job 0:7035912049 is in state 'finished'
[2026-03-02 17:25:17] 2026-03-02 16:24:30,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,106 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-02 17:25:17] 2026-03-02 16:24:31,153 | INFO     | job 7035912049 has state=finished
[2026-03-02 17:25:17] 2026-03-02 16:24:31,153 | INFO     | preparing for final server update for job 7035912049 in state='finished'
[2026-03-02 17:25:17] 2026-03-02 16:24:31,153 | INFO     | reading metadata from: /tmp/job_11241204/atlas/pilot/slots/0/PanDA_Pilot-7035912049/jobReport.json
[2026-03-02 17:25:17] 2026-03-02 16:24:31,154 | INFO     | added worker_node to metadata from /tmp/job_11241204/atlas/pilot/slots/0/workernode_map.json
[2026-03-02 17:25:17] 2026-03-02 16:24:31,154 | INFO     | this job has now completed (state=finished)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,155 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,155 | INFO     | log transfer has been attempted: DONE
[2026-03-02 17:25:17] 2026-03-02 16:24:31,155 | INFO     | job 7035912049 has finished - writing final server update
[2026-03-02 17:25:17] 2026-03-02 16:24:31,155 | INFO     | total number of processed events: 400 (read)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,173 | INFO     | using path: /tmp/job_11241204/atlas/pilot/slots/0/PanDA_Pilot-7035912049/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,173 | INFO     | extracted standard info from prmon json
[2026-03-02 17:25:17] 2026-03-02 16:24:31,173 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 17:25:17] 2026-03-02 16:24:31,173 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 17:25:17] 2026-03-02 16:24:31,173 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 17:25:17] 2026-03-02 16:24:31,173 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 17:25:17] 2026-03-02 16:24:31,174 | INFO     | fitting pss+swap vs Time
[2026-03-02 17:25:17] 2026-03-02 16:24:31,174 | INFO     | sum of square deviations: 241429643.0
[2026-03-02 17:25:17] 2026-03-02 16:24:31,174 | INFO     | sum of deviations: -16860412474.499998
[2026-03-02 17:25:17] 2026-03-02 16:24:31,174 | INFO     | mean x: 1772465738.5
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | mean y: 2627039.032608696
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | intersect: 123784044584.47151
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | chi2: 0.196324204637579
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | current memory leak: -69.84 B/s (using 92 data points, chi2=0.20)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | could have reported an average CPU frequency of 2380 MHz (7 samples)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | ..............................
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | . Timing measurements:
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | . get job = 0 s
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | . initial setup = 2 s
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | . payload setup = 2 s
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | . stage-in = 0 s
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | . payload execution = 6009 s
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | . stage-out = 0 s
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | . log creation = 0 s
[2026-03-02 17:25:17] 2026-03-02 16:24:31,175 | INFO     | ..............................
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | 
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | job summary report
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | --------------------------------------------------
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | PanDA job id: 7035912049
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | task id: 48844921
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | errors: (none)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | pilot state: finished 
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | transexitcode: 0
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | exeerrorcode: 0
[2026-03-02 17:25:17] 2026-03-02 16:24:31,221 | INFO     | exeerrordiag: 
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | exitcode: 0
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | exitmsg: OK
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | cpuconsumptiontime: 44444 s
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | nevents: 400
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | neventsw: 0
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | pid: 19881
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | pgrp: 19881
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | corecount: 8
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | event service: False
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | sizes: {0: 2282010, 1: 2282525, 11: 2282525, 6015: 2309486, 6016: 2318514, 6018: 2318892}
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | --------------------------------------------------
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | 
[2026-03-02 17:25:17] 2026-03-02 16:24:31,222 | INFO     | executing command: ls -lF /tmp/job_11241204/atlas/pilot/slots/0
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | job 7035912049 has completed (purged errors)
[2026-03-02 17:25:17] 2026-03-02 16:24:31,232 | INFO     | overall cleanup function is called
[2026-03-02 17:25:17] 2026-03-02 16:24:32,238 | INFO     | --- collectZombieJob: --- 10, [19881]
[2026-03-02 17:25:17] 2026-03-02 16:24:32,238 | INFO     | zombie collector waiting for pid 19881
[2026-03-02 17:25:17] 2026-03-02 16:24:32,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 17:25:17] 2026-03-02 16:24:32,238 | INFO     | collected zombie processes
[2026-03-02 17:25:17] 2026-03-02 16:24:32,238 | INFO     | will attempt to kill all subprocesses of pid=19881
[2026-03-02 17:25:17] 2026-03-02 16:24:32,349 | INFO     | process IDs to be killed: [19881] (in reverse order)
[2026-03-02 17:25:17] 2026-03-02 16:24:32,388 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 17:25:17] 2026-03-02 16:24:32,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 17:25:17] 2026-03-02 16:24:32,392 | INFO     | did not find any defunct processes belonging to 19881
[2026-03-02 17:25:17] 2026-03-02 16:24:32,396 | INFO     | did not find any defunct processes belonging to 19881
[2026-03-02 17:25:17] 2026-03-02 16:24:32,396 | INFO     | ready for new job
[2026-03-02 17:25:17] 2026-03-02 16:24:32,396 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 17:25:17] 2026-03-02 16:24:32,397 | INFO     | **************************************
[2026-03-02 17:25:17] 2026-03-02 16:24:32,397 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 17:25:17] 2026-03-02 16:24:32,397 | INFO     | **************************************
[2026-03-02 17:25:17] 2026-03-02 16:24:32,397 | INFO     | 
[2026-03-02 17:25:17] 2026-03-02 16:24:32,410 | INFO     | architecture information:
[2026-03-02 17:25:17] 2026-03-02 16:24:32,410 | INFO     | executing command: cat /etc/os-release
[2026-03-02 17:25:17] 2026-03-02 16:24:32,416 | INFO     | cat /etc/os-release:
[2026-03-02 17:25:17] NAME="CentOS Linux"
[2026-03-02 17:25:17] VERSION="7 (Core)"
[2026-03-02 17:25:17] ID="centos"
[2026-03-02 17:25:17] ID_LIKE="rhel fedora"
[2026-03-02 17:25:17] VERSION_ID="7"
[2026-03-02 17:25:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 17:25:17] ANSI_COLOR="0;31"
[2026-03-02 17:25:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 17:25:17] HOME_URL="https://www.centos.org/"
[2026-03-02 17:25:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 17:25:17] 
[2026-03-02 17:25:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 17:25:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 17:25:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 17:25:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 17:25:17] 
[2026-03-02 17:25:17] 2026-03-02 16:24:32,416 | INFO     | **************************************
[2026-03-02 17:25:17] 2026-03-02 16:24:32,919 | INFO     | executing command: df -mP /tmp/job_11241204/atlas/pilot/slots/0
[2026-03-02 17:25:17] 2026-03-02 16:24:32,925 | INFO     | sufficient remaining disk space (222786748416 B)
[2026-03-02 17:25:17] 2026-03-02 16:24:32,925 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 17:25:17] 2026-03-02 16:24:32,925 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 17:25:17] 2026-03-02 16:24:32,925 | INFO     | update_server=False
[2026-03-02 17:25:17] 2026-03-02 16:24:32,925 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 17:25:17] 2026-03-02 16:24:32,925 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 17:25:17] 2026-03-02 16:24:32,925 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 17:25:17] 2026-03-02 16:24:32,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 17:25:17] 2026-03-02 16:24:33,341 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 17:25:17] 2026-03-02 16:24:33,341 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 17:25:17] 2026-03-02 16:24:33,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 17:25:17] 2026-03-02 16:24:33,341 | INFO     | will abort loop
[2026-03-02 17:25:17] 2026-03-02 16:24:33,608 | INFO     | all data control threads have been joined
[2026-03-02 17:25:17] 2026-03-02 16:24:33,763 | INFO     | all payload control threads have been joined
[2026-03-02 17:25:17] 2026-03-02 16:24:33,930 | INFO     | [job] retrieve thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:33,930 | INFO     | [job] queue monitor thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,163 | INFO     | all job control threads have been joined
[2026-03-02 17:25:17] 2026-03-02 16:24:34,179 | INFO     | [job] validate thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,346 | INFO     | [job] job monitor thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,402 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,471 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,475 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,613 | INFO     | [data] control thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,712 | INFO     | [data] copytool_in thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,768 | INFO     | [payload] control thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,825 | INFO     | [payload] validate_post thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,825 | INFO     | [payload] failed_post thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:34,931 | INFO     | [data] copytool_out thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:35,169 | INFO     | [job] control thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:36,931 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:24:43,788 | INFO     | job.realtimelogging is not enabled
[2026-03-02 17:25:17] 2026-03-02 16:24:44,793 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 17:25:17] 2026-03-02 16:25:02,433 | INFO     | PID=14988 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-02 17:25:17] 2026-03-02 16:25:02,433 | INFO     | .. there are 7 such processes running
[2026-03-02 17:25:17] 2026-03-02 16:25:02,433 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 17:25:17] 2026-03-02 16:25:02,434 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 17:25:17] 2026-03-02 16:25:02,434 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 17:25:17] 2026-03-02 16:25:12,149 | INFO     | [monitor] cgroup control has ended
[2026-03-02 17:25:17] 2026-03-02 16:25:12,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-02 17:25:17] 2026-03-02 16:25:12,482 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 17:25:17] 2026-03-02 16:25:12,483 | INFO     | [monitor] control thread has ended
[2026-03-02 17:25:17] 2026-03-02 16:25:17,347 | INFO     | all workflow threads have been joined
[2026-03-02 17:25:17] 2026-03-02 16:25:17,347 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 17:25:17] 2026-03-02 16:25:17,348 | INFO     | traces error code: 0
[2026-03-02 17:25:17] 2026-03-02 16:25:17,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 17:25:17] 2026-03-02 16:25:17,402 [wrapper] ==== pilot stdout END ====
[2026-03-02 17:25:17] 2026-03-02 16:25:17,403 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 17:25:17] 2026-03-02 16:25:17,404 [wrapper] pilotpid: 14988
[2026-03-02 17:25:17] 2026-03-02 16:25:17,405 [wrapper] Pilot exit status: 0
[2026-03-02 17:25:17] 2026-03-02 16:25:17,409 [wrapper] pandaids: 7035912049
[2026-03-02 17:25:17] 2026-03-02 16:25:17,433 [wrapper] cleanup supervisor_pilot  6399 14989
[2026-03-02 17:25:17] 2026-03-02 16:25:17,435 [wrapper] Test setup, not cleaning
[2026-03-02 17:25:17] 2026-03-02 16:25:17,436 [wrapper] apfmon messages muted
[2026-03-02 17:25:17] 2026-03-02 16:25:17,437 [wrapper] ==== wrapper stdout END ====
[2026-03-02 17:25:17] 2026-03-02 16:25:17,438 [wrapper] ==== wrapper stderr END ====
[2026-03-02 17:25:17]  *** Error codes and diagnostics ***
[2026-03-02 17:25:17]     "exeErrorCode": 0,
[2026-03-02 17:25:17]     "exeErrorDiag": "",
[2026-03-02 17:25:17]     "pilotErrorCode": 0,
[2026-03-02 17:25:17]     "pilotErrorDiag": "",
[2026-03-02 17:25:17]  *** Listing of results directory ***
[2026-03-02 17:25:17] total 353976
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user    602657 Feb  3 12:11 pilot3.tar.gz
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user      5111 Mar  2 10:38 queuedata.json
[2026-03-02 17:25:17] -rwx------ 1 mf493845 unix-user     36322 Mar  2 10:38 runpilot2-wrapper.sh
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user       100 Mar  2 15:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 17:25:17] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  2 15:13 run_atlas
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user       105 Mar  2 15:13 job.xml
[2026-03-02 17:25:17] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  2 15:43 start_atlas.sh
[2026-03-02 17:25:17] drwxrwx--x 2 mf493845 unix-user       100 Mar  2 15:43 shared
[2026-03-02 17:25:17] -rw-r--r-- 2 mf493845 unix-user    616326 Mar  2 15:43 input.tar.gz
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user      6390 Mar  2 15:43 init_data.xml
[2026-03-02 17:25:17] -rw-r--r-- 2 mf493845 unix-user 119195772 Mar  2 15:43 EVNT.48454651._000003.pool.root.1
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user         0 Mar  2 15:43 boinc_setup_complete
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user      8192 Mar  2 15:43 boinc_mmap_file
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user         0 Mar  2 15:43 boinc_lockfile
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user      2639 Mar  2 15:43 pandaJob.out
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user    998107 Mar  2 15:44 agis_schedconf.cvmfs.json
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user   1512931 Mar  2 15:44 agis_ddmendpoints.agis.ALL.json
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user       420 Mar  2 15:44 workernode_map.json
[2026-03-02 17:25:17] drwx------ 7 mf493845 unix-user       580 Mar  2 15:44 pilot3
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user 236872525 Mar  2 17:24 HITS.48844921._000056.pool.root.1
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user        95 Mar  2 17:24 pilot_heartbeat.json
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user      1017 Mar  2 17:24 memory_monitor_summary.json
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user    337194 Mar  2 17:24 log.48844921._000056.job.log.tgz.1
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user      6313 Mar  2 17:24 heartbeat.json
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user      5089 Mar  2 17:25 pilotlog.txt
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user    891891 Mar  2 17:25 log.48844921._000056.job.log.1
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user       357 Mar  2 17:25 output.list
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user       620 Mar  2 17:25 runtime_log
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user   1249280 Mar  2 17:25 result.tar.gz
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user      9219 Mar  2 17:25 runtime_log.err
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user       646 Mar  2 17:25 fAwKDmZuEH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm54ALDmxVWmGn.diag
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user     21759 Mar  2 17:25 stderr.txt
[2026-03-02 17:25:17] HITS file was successfully produced:
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user 236872525 Mar  2 17:24 shared/HITS.pool.root.1
[2026-03-02 17:25:17]  *** Contents of shared directory: ***
[2026-03-02 17:25:17] total 349568
[2026-03-02 17:25:17] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  2 15:43 start_atlas.sh
[2026-03-02 17:25:17] -rw-r--r-- 2 mf493845 unix-user    616326 Mar  2 15:43 input.tar.gz
[2026-03-02 17:25:17] -rw-r--r-- 2 mf493845 unix-user 119195772 Mar  2 15:43 ATLAS.root_0
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user 236872525 Mar  2 17:24 HITS.pool.root.1
[2026-03-02 17:25:17] -rw------- 1 mf493845 unix-user   1249280 Mar  2 17:25 result.tar.gz
17:25:18 (11136): run_atlas exited; CPU time 44534.555635
17:25:18 (11136): called boinc_finish(0)

</stderr_txt>
]]>

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