Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:56:49 (224654): wrapper (7.7.26015): starting
21:56:49 (224654): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 21:56:49] Arguments: --nthreads 4
[2026-03-02 21:56:49] Threads: 4
[2026-03-02 21:56:49] Checking for CVMFS
[2026-03-02 21:56:49] No cvmfs_config command found, will try listing directly
[2026-03-02 21:56:49] CVMFS is ok
[2026-03-02 21:56:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 21:56:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 21:56:49] Further information can be found at the LHC@home message board.
[2026-03-02 21:56:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 21:56:49] Checking for apptainer binary...
[2026-03-02 21:56:49] which: no apptainer in ((null))
[2026-03-02 21:56:49] apptainer is not installed, using version from CVMFS
[2026-03-02 21:56:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 21:56:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2026-03-02 21:56:49] apptainer works
[2026-03-02 21:56:49] Set ATHENA_PROC_NUMBER=4
[2026-03-02 21:56:49] Set ATHENA_CORE_NUMBER=4
[2026-03-02 21:56:49] Starting ATLAS job with PandaID=7035911142
[2026-03-02 21:56:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:52:53 (638012): wrapper (7.7.26015): starting
04:52:53 (638012): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 04:52:53] Arguments: --nthreads 4
[2026-03-03 04:52:53] Threads: 4
[2026-03-03 04:52:53] This job has been restarted, cleaning up previous attempt
[2026-03-03 04:52:53] Checking for CVMFS
[2026-03-03 04:52:53] No cvmfs_config command found, will try listing directly
[2026-03-03 04:52:53] CVMFS is ok
[2026-03-03 04:52:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 04:52:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 04:52:53] Further information can be found at the LHC@home message board.
[2026-03-03 04:52:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 04:52:53] Checking for apptainer binary...
[2026-03-03 04:52:53] which: no apptainer in ((null))
[2026-03-03 04:52:53] apptainer is not installed, using version from CVMFS
[2026-03-03 04:52:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 04:52:53] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2026-03-03 04:52:53] apptainer works
[2026-03-03 04:52:53] Set ATHENA_PROC_NUMBER=4
[2026-03-03 04:52:53] Set ATHENA_CORE_NUMBER=4
[2026-03-03 04:52:53] Starting ATLAS job with PandaID=7035911142
[2026-03-03 04:52:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 12:04:25]  *** The last 200 lines of the pilot log: ***
[2026-03-03 12:04:25] 2026-03-03 10:55:07,715 | INFO     | reading metadata from: /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-7035911142/jobReport.json
[2026-03-03 12:04:25] 2026-03-03 10:55:07,717 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot20/slots/0/workernode_map.json
[2026-03-03 12:04:25] 2026-03-03 10:55:07,718 | INFO     | this job has now completed (state=finished)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,718 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,718 | INFO     | log transfer has been attempted: DONE
[2026-03-03 12:04:25] 2026-03-03 10:55:07,718 | INFO     | job 7035911142 has finished - writing final server update
[2026-03-03 12:04:25] 2026-03-03 10:55:07,719 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_621586/.job.ad'
[2026-03-03 12:04:25] 2026-03-03 10:55:07,719 | INFO     | total number of processed events: 400 (read)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,730 | INFO     | using path: /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-7035911142/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,731 | INFO     | extracted standard info from prmon json
[2026-03-03 12:04:25] 2026-03-03 10:55:07,731 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 12:04:25] 2026-03-03 10:55:07,731 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 12:04:25] 2026-03-03 10:55:07,732 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 12:04:25] 2026-03-03 10:55:07,732 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 12:04:25] 2026-03-03 10:55:07,738 | INFO     | fitting pss+swap vs Time
[2026-03-03 12:04:25] 2026-03-03 10:55:07,739 | INFO     | sum of square deviations: 22162573680.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,743 | INFO     | sum of deviations: 68875345647.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,743 | INFO     | mean x: 1772522633.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,743 | INFO     | mean y: 2340686.0072289156
[2026-03-03 12:04:25] 2026-03-03 10:55:07,743 | INFO     | intersect: -5506185118.700012
[2026-03-03 12:04:25] 2026-03-03 10:55:07,744 | INFO     | chi2: 1.340993357856481
[2026-03-03 12:04:25] 2026-03-03 10:55:07,744 | INFO     | sum of square deviations: 21371126282.5
[2026-03-03 12:04:25] 2026-03-03 10:55:07,748 | INFO     | sum of deviations: 67779016742.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,748 | INFO     | mean x: 1772522480.5
[2026-03-03 12:04:25] 2026-03-03 10:55:07,749 | INFO     | mean y: 2340474.751219512
[2026-03-03 12:04:25] 2026-03-03 10:55:07,749 | INFO     | intersect: -5619255190.9745865
[2026-03-03 12:04:25] 2026-03-03 10:55:07,749 | INFO     | chi2: 1.3411447550455162
[2026-03-03 12:04:25] 2026-03-03 10:55:07,749 | INFO     | current chi2=1.3411447550455162 (change=-0.011289928331727999 %)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,749 | INFO     | right removable region: 409
[2026-03-03 12:04:25] 2026-03-03 10:55:07,750 | INFO     | sum of square deviations: 21371126282.5
[2026-03-03 12:04:25] 2026-03-03 10:55:07,754 | INFO     | sum of deviations: 14008709170.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,754 | INFO     | mean x: 1772522785.5
[2026-03-03 12:04:25] 2026-03-03 10:55:07,754 | INFO     | mean y: 2351194.4
[2026-03-03 12:04:25] 2026-03-03 10:55:07,754 | INFO     | intersect: -1159532174.3581898
[2026-03-03 12:04:25] 2026-03-03 10:55:07,755 | INFO     | chi2: 0.02437773248369977
[2026-03-03 12:04:25] 2026-03-03 10:55:07,755 | INFO     | current chi2=0.02437773248369977 (change=98.18211385307184 %)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,755 | INFO     | sum of square deviations: 20598749010.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,759 | INFO     | sum of deviations: 10769573424.000002
[2026-03-03 12:04:25] 2026-03-03 10:55:07,759 | INFO     | mean x: 1772522938.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,759 | INFO     | mean y: 2351830.92345679
[2026-03-03 12:04:25] 2026-03-03 10:55:07,759 | INFO     | intersect: -924370268.4257796
[2026-03-03 12:04:25] 2026-03-03 10:55:07,760 | INFO     | chi2: 0.02039949934112574
[2026-03-03 12:04:25] 2026-03-03 10:55:07,760 | INFO     | current chi2=0.02039949934112574 (change=16.319127077278765 %)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,760 | INFO     | left removable region: 20
[2026-03-03 12:04:25] 2026-03-03 10:55:07,761 | INFO     | sum of square deviations: 18252584090.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,764 | INFO     | sum of deviations: 18833534243.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,764 | INFO     | mean x: 1772523060.0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,764 | INFO     | mean y: 2349933.6323907454
[2026-03-03 12:04:25] 2026-03-03 10:55:07,764 | INFO     | intersect: -1826589661.0251427
[2026-03-03 12:04:25] 2026-03-03 10:55:07,765 | INFO     | chi2: 0.00847393196200176
[2026-03-03 12:04:25] 2026-03-03 10:55:07,765 | INFO     | current memory leak: 1.03 B/s (using 389 data points, chi2=0.01)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,766 | INFO     | could have reported an average CPU frequency of 2640 MHz (18 samples)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,766 | INFO     | ..............................
[2026-03-03 12:04:25] 2026-03-03 10:55:07,766 | INFO     | . Timing measurements:
[2026-03-03 12:04:25] 2026-03-03 10:55:07,766 | INFO     | . get job = 0 s
[2026-03-03 12:04:25] 2026-03-03 10:55:07,766 | INFO     | . initial setup = 1 s
[2026-03-03 12:04:25] 2026-03-03 10:55:07,766 | INFO     | . payload setup = 6 s
[2026-03-03 12:04:25] 2026-03-03 10:55:07,767 | INFO     | . stage-in = 0 s
[2026-03-03 12:04:25] 2026-03-03 10:55:07,767 | INFO     | . payload execution = 25299 s
[2026-03-03 12:04:25] 2026-03-03 10:55:07,767 | INFO     | . stage-out = 1 s
[2026-03-03 12:04:25] 2026-03-03 10:55:07,767 | INFO     | . log creation = 0 s
[2026-03-03 12:04:25] 2026-03-03 10:55:07,767 | INFO     | ..............................
[2026-03-03 12:04:25] 2026-03-03 10:55:07,983 | INFO     | 
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | job summary report
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | --------------------------------------------------
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | PanDA job id: 7035911142
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | task id: 48844157
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | errors: (none)
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | pilot state: finished 
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | transexitcode: 0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | exeerrorcode: 0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | exeerrordiag: 
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | exitcode: 0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | exitmsg: OK
[2026-03-03 12:04:25] 2026-03-03 10:55:07,984 | INFO     | cpuconsumptiontime: 95370 s
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | nevents: 400
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | neventsw: 0
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | pid: 644406
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | pgrp: 644406
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | corecount: 4
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | event service: False
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | sizes: {0: 2282357, 11: 2282357, 25306: 2318626, 25307: 2318625, 25309: 2332528, 25312: 2332584, 25313: 2332906}
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | --------------------------------------------------
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | 
[2026-03-03 12:04:25] 2026-03-03 10:55:07,985 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/0
[2026-03-03 12:04:25] 2026-03-03 10:55:08,009 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 12:04:25] 2026-03-03 10:55:08,011 | INFO     | job 7035911142 has completed (purged errors)
[2026-03-03 12:04:25] 2026-03-03 10:55:08,012 | INFO     | overall cleanup function is called
[2026-03-03 12:04:25] 2026-03-03 10:55:08,785 | INFO     | PID=641809 has CPU usage=16.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 12:04:25] 2026-03-03 10:55:08,785 | INFO     | .. there are 12 such processes running
[2026-03-03 12:04:25] 2026-03-03 10:55:09,019 | INFO     | --- collectZombieJob: --- 10, [644406]
[2026-03-03 12:04:25] 2026-03-03 10:55:09,019 | INFO     | zombie collector waiting for pid 644406
[2026-03-03 12:04:25] 2026-03-03 10:55:09,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 12:04:25] 2026-03-03 10:55:09,019 | INFO     | collected zombie processes
[2026-03-03 12:04:25] 2026-03-03 10:55:09,020 | INFO     | will attempt to kill all subprocesses of pid=644406
[2026-03-03 12:04:25] 2026-03-03 10:55:09,385 | INFO     | process IDs to be killed: [644406] (in reverse order)
[2026-03-03 12:04:25] 2026-03-03 10:55:09,513 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 12:04:25] 2026-03-03 10:55:09,514 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 12:04:25] 2026-03-03 10:55:09,525 | INFO     | did not find any defunct processes belonging to 644406
[2026-03-03 12:04:25] 2026-03-03 10:55:09,537 | INFO     | did not find any defunct processes belonging to 644406
[2026-03-03 12:04:25] 2026-03-03 10:55:09,537 | INFO     | ready for new job
[2026-03-03 12:04:25] 2026-03-03 10:55:09,537 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 12:04:25] 2026-03-03 10:55:09,541 | INFO     | **************************************
[2026-03-03 12:04:25] 2026-03-03 10:55:09,541 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 12:04:25] 2026-03-03 10:55:09,541 | INFO     | **************************************
[2026-03-03 12:04:25] 2026-03-03 10:55:09,541 | INFO     | 
[2026-03-03 12:04:25] 2026-03-03 10:55:09,545 | INFO     | architecture information:
[2026-03-03 12:04:25] 2026-03-03 10:55:09,545 | INFO     | executing command: cat /etc/os-release
[2026-03-03 12:04:25] 2026-03-03 10:55:09,564 | INFO     | cat /etc/os-release:
[2026-03-03 12:04:25] NAME="CentOS Linux"
[2026-03-03 12:04:25] VERSION="7 (Core)"
[2026-03-03 12:04:25] ID="centos"
[2026-03-03 12:04:25] ID_LIKE="rhel fedora"
[2026-03-03 12:04:25] VERSION_ID="7"
[2026-03-03 12:04:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 12:04:25] ANSI_COLOR="0;31"
[2026-03-03 12:04:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 12:04:25] HOME_URL="https://www.centos.org/"
[2026-03-03 12:04:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 12:04:25] 
[2026-03-03 12:04:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 12:04:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 12:04:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 12:04:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 12:04:25] 
[2026-03-03 12:04:25] 2026-03-03 10:55:09,564 | INFO     | **************************************
[2026-03-03 12:04:25] 2026-03-03 10:55:10,066 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/0
[2026-03-03 12:04:25] 2026-03-03 10:55:10,085 | INFO     | sufficient remaining disk space (669152968704 B)
[2026-03-03 12:04:25] 2026-03-03 10:55:10,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 12:04:25] 2026-03-03 10:55:10,086 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 12:04:25] 2026-03-03 10:55:10,086 | INFO     | update_server=False
[2026-03-03 12:04:25] 2026-03-03 10:55:10,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 12:04:25] 2026-03-03 10:55:10,174 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 12:04:25] 2026-03-03 10:55:10,584 | INFO     | all data control threads have been joined
[2026-03-03 12:04:25] 2026-03-03 10:55:10,588 | INFO     | all job control threads have been joined
[2026-03-03 12:04:25] 2026-03-03 10:55:10,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 12:04:25] 2026-03-03 10:55:10,763 | INFO     | aborting loop
[2026-03-03 12:04:25] 2026-03-03 10:55:11,090 | INFO     | [job] retrieve thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:11,120 | INFO     | [payload] validate_post thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:11,286 | INFO     | all payload control threads have been joined
[2026-03-03 12:04:25] 2026-03-03 10:55:11,474 | INFO     | [payload] failed_post thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:11,522 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:11,589 | INFO     | [data] control thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:11,594 | INFO     | [job] control thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:11,767 | INFO     | [job] job monitor thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:11,784 | INFO     | [job] validate thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:12,077 | INFO     | [data] copytool_in thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:12,149 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:12,152 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:12,179 | INFO     | [data] copytool_out thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:12,291 | INFO     | [payload] control thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:12,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 12:04:25] 2026-03-03 10:55:13,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 12:04:25] 2026-03-03 10:55:13,871 | INFO     | [job] queue monitor thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:17,467 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:20,936 | INFO     | job.realtimelogging is not enabled
[2026-03-03 12:04:25] 2026-03-03 10:55:21,941 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 12:04:25] 2026-03-03 10:55:41,289 | INFO     | PID=641809 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-03 12:04:25] 2026-03-03 10:55:41,289 | INFO     | .. there are 12 such processes running
[2026-03-03 12:04:25] 2026-03-03 10:55:41,289 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 12:04:25] 2026-03-03 10:55:41,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 12:04:25] 2026-03-03 10:55:41,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 12:04:25] 2026-03-03 10:55:45,811 | INFO     | [monitor] cgroup control has ended
[2026-03-03 12:04:25] 2026-03-03 10:55:46,190 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23414079027008)>', '<ExcThread(monitor, started 23413841467136)>']
[2026-03-03 12:04:25] 2026-03-03 10:55:46,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 12:04:25] 2026-03-03 10:55:46,315 | INFO     | [monitor] control thread has ended
[2026-03-03 12:04:25] 2026-03-03 10:55:51,216 | INFO     | all workflow threads have been joined
[2026-03-03 12:04:25] 2026-03-03 10:55:51,216 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 12:04:25] 2026-03-03 10:55:51,216 | INFO     | traces error code: 0
[2026-03-03 12:04:25] 2026-03-03 10:55:51,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 12:04:25] 2026-03-03 10:55:51,370 [wrapper] ==== pilot stdout END ====
[2026-03-03 12:04:25] 2026-03-03 10:55:51,372 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 12:04:25] 2026-03-03 10:55:51,375 [wrapper] pilotpid: 641809
[2026-03-03 12:04:25] 2026-03-03 10:55:51,377 [wrapper] Pilot exit status: 0
[2026-03-03 12:04:25] 2026-03-03 10:55:51,388 [wrapper] pandaids: 7035911142 7035911142
[2026-03-03 12:04:25] 2026-03-03 10:55:51,461 [wrapper] cleanup supervisor_pilot 1002971 641810
[2026-03-03 12:04:25] 2026-03-03 10:55:51,464 [wrapper] Test setup, not cleaning
[2026-03-03 12:04:25] 2026-03-03 10:55:51,467 [wrapper] apfmon messages muted
[2026-03-03 12:04:25] 2026-03-03 10:55:51,469 [wrapper] ==== wrapper stdout END ====
[2026-03-03 12:04:25] 2026-03-03 10:55:51,471 [wrapper] ==== wrapper stderr END ====
[2026-03-03 12:04:25]  *** Error codes and diagnostics ***
[2026-03-03 12:04:25]     "exeErrorCode": 0,
[2026-03-03 12:04:25]     "exeErrorDiag": "",
[2026-03-03 12:04:25]     "pilotErrorCode": 0,
[2026-03-03 12:04:25]     "pilotErrorDiag": "",
[2026-03-03 12:04:25]  *** Listing of results directory ***
[2026-03-03 12:04:25] total 715100
[2026-03-03 12:04:25] drwx------ 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc    584627 Mar  2 10:36 pilot3.tar.gz
[2026-03-03 12:04:25] -rwx------ 1 boinc boinc     36322 Mar  2 10:40 runpilot2-wrapper.sh
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc      5111 Mar  2 10:40 queuedata.json
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc       100 Mar  2 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 12:04:25] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 21:56 run_atlas
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc       105 Mar  2 21:56 job.xml
[2026-03-03 12:04:25] -rw-r--r-- 3 boinc boinc 241970227 Mar  2 21:56 EVNT.48452644._000001.pool.root.1
[2026-03-03 12:04:25] -rw-r--r-- 3 boinc boinc 241970227 Mar  2 21:56 ATLAS.root_0
[2026-03-03 12:04:25] -rw-r--r-- 2 boinc boinc     15845 Mar  2 21:56 start_atlas.sh
[2026-03-03 12:04:25] drwxrwx--x 2 boinc boinc      4096 Mar  2 21:56 shared
[2026-03-03 12:04:25] -rw-r--r-- 2 boinc boinc    597944 Mar  2 21:56 input.tar.gz
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc         0 Mar  2 21:56 boinc_lockfile
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc      2615 Mar  3 04:52 pandaJob.out
[2026-03-03 12:04:25] -rw------- 1 boinc boinc    997730 Mar  3 04:53 agis_schedconf.cvmfs.json
[2026-03-03 12:04:25] -rw------- 1 boinc boinc       451 Mar  3 04:53 workernode_map.json
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc      6647 Mar  3 08:57 init_data.xml
[2026-03-03 12:04:25] -rw------- 1 boinc boinc 236226629 Mar  3 11:54 HITS.48844157._000025.pool.root.1
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc       531 Mar  3 11:54 boinc_task_state.xml
[2026-03-03 12:04:25] -rw------- 1 boinc boinc        97 Mar  3 11:54 pilot_heartbeat.json
[2026-03-03 12:04:25] -rw------- 1 boinc boinc      1031 Mar  3 11:55 memory_monitor_summary.json
[2026-03-03 12:04:25] -rw------- 1 boinc boinc   1516104 Mar  3 11:55 agis_ddmendpoints.agis.ALL.json
[2026-03-03 12:04:25] -rw------- 1 boinc boinc    568111 Mar  3 11:55 log.48844157._000025.job.log.tgz.1
[2026-03-03 12:04:25] -rw------- 1 boinc boinc      6388 Mar  3 11:55 heartbeat.json
[2026-03-03 12:04:25] -rw------- 1 boinc boinc      4901 Mar  3 11:55 pilotlog.txt
[2026-03-03 12:04:25] -rw------- 1 boinc boinc   3512642 Mar  3 11:55 log.48844157._000025.job.log.1
[2026-03-03 12:04:25] -rw------- 1 boinc boinc       357 Mar  3 11:55 output.list
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc       620 Mar  3 11:55 runtime_log
[2026-03-03 12:04:25] -rw------- 1 boinc boinc   4096000 Mar  3 11:55 result.tar.gz
[2026-03-03 12:04:25] -rw------- 1 boinc boinc       791 Mar  3 11:55 xdFKDmXwEH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm47ALDm3w2wmm.diag
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc      9282 Mar  3 11:55 runtime_log.err
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc        29 Mar  3 12:04 wrapper_checkpoint.txt
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc      8192 Mar  3 12:04 boinc_mmap_file
[2026-03-03 12:04:25] -rw-r--r-- 1 boinc boinc     23101 Mar  3 12:04 stderr.txt
[2026-03-03 12:04:25] HITS file was successfully produced:
[2026-03-03 12:04:25] -rw------- 1 boinc boinc 236226629 Mar  3 11:54 shared/HITS.pool.root.1
[2026-03-03 12:04:25]  *** Contents of shared directory: ***
[2026-03-03 12:04:25] total 471600
[2026-03-03 12:04:25] -rw-r--r-- 3 boinc boinc 241970227 Mar  2 21:56 ATLAS.root_0
[2026-03-03 12:04:25] -rw-r--r-- 2 boinc boinc     15845 Mar  2 21:56 start_atlas.sh
[2026-03-03 12:04:25] -rw-r--r-- 2 boinc boinc    597944 Mar  2 21:56 input.tar.gz
[2026-03-03 12:04:25] -rw------- 1 boinc boinc 236226629 Mar  3 11:54 HITS.pool.root.1
[2026-03-03 12:04:25] -rw------- 1 boinc boinc   4096000 Mar  3 11:55 result.tar.gz
12:04:27 (638012): run_atlas exited; CPU time 96426.866680
12:04:27 (638012): called boinc_finish(0)

</stderr_txt>
]]>

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