Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:47:50 (2123396): wrapper (7.7.26015): starting
06:47:50 (2123396): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 06:47:50] Arguments: --nthreads 4
[2026-03-02 06:47:50] Threads: 4
[2026-03-02 06:47:50] Checking for CVMFS
[2026-03-02 06:47:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 06:47:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 06:47:51] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 06:47:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 06:47:52] 2.13.3.0 1563455 2267 52800 156805 0 55 2056319 4096000 2748 130560 0 1581606 99.987 84360 1185 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-02 06:47:52] CVMFS is ok
[2026-03-02 06:47:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 06:47:52] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-02 06:47:52] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-02 06:47:52] Further information can be found at the LHC@home message board.
[2026-03-02 06:47:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 06:47:52] Checking for apptainer binary...
[2026-03-02 06:47:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 06:47:52] Running /usr/bin/apptainer --version
[2026-03-02 06:47:52] apptainer version 1.4.5
[2026-03-02 06:47:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 06:47:52] T5810-Ubuntu
[2026-03-02 06:47:52] apptainer works
[2026-03-02 06:47:52] Set ATHENA_PROC_NUMBER=4
[2026-03-02 06:47:52] Set ATHENA_CORE_NUMBER=4
[2026-03-02 06:47:52] Starting ATLAS job with PandaID=7035863911
[2026-03-02 06:47:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:17:39 (4946): wrapper (7.7.26015): starting
09:17:39 (4946): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 09:17:39] Arguments: --nthreads 4
[2026-03-02 09:17:39] Threads: 4
[2026-03-02 09:17:39] This job has been restarted, cleaning up previous attempt
[2026-03-02 09:17:39] Checking for CVMFS
[2026-03-02 09:17:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 09:17:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 09:17:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 09:17:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 09:17:42] 2.13.3.0 5427 0 24868 156809 3 1 2074449 4096000 0 130560 0 0 0.000 1336 1442 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-02 09:17:42] CVMFS is ok
[2026-03-02 09:17:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 09:17:42] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-02 09:17:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-02 09:17:42] Further information can be found at the LHC@home message board.
[2026-03-02 09:17:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 09:17:42] Checking for apptainer binary...
[2026-03-02 09:17:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 09:17:42] Running /usr/bin/apptainer --version
[2026-03-02 09:17:42] apptainer version 1.4.5
[2026-03-02 09:17:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 09:17:42] T5810-Ubuntu
[2026-03-02 09:17:42] apptainer works
[2026-03-02 09:17:42] Set ATHENA_PROC_NUMBER=4
[2026-03-02 09:17:42] Set ATHENA_CORE_NUMBER=4
[2026-03-02 09:17:42] Starting ATLAS job with PandaID=7035863911
[2026-03-02 09:17:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 13:11:20]  *** The last 200 lines of the pilot log: ***
[2026-03-02 13:11:21] 2026-03-02 18:10:42,308 | INFO     | job 7035863911 has finished - writing final server update
[2026-03-02 13:11:21] 2026-03-02 18:10:42,308 | INFO     | total number of processed events: 400 (read)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,316 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/21/PanDA_Pilot-7035863911/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,317 | INFO     | extracted standard info from prmon json
[2026-03-02 13:11:21] 2026-03-02 18:10:42,317 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 13:11:21] 2026-03-02 18:10:42,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 13:11:21] 2026-03-02 18:10:42,318 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 13:11:21] 2026-03-02 18:10:42,318 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 13:11:21] 2026-03-02 18:10:42,323 | INFO     | fitting pss+swap vs Time
[2026-03-02 13:11:21] 2026-03-02 18:10:42,323 | INFO     | sum of square deviations: 3723716330.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,325 | INFO     | sum of deviations: -5112630698.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,325 | INFO     | mean x: 1772468045.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,325 | INFO     | mean y: 2335673.628820961
[2026-03-02 13:11:21] 2026-03-02 18:10:42,326 | INFO     | intersect: 2435919151.8018336
[2026-03-02 13:11:21] 2026-03-02 18:10:42,326 | INFO     | chi2: 2.1050185124108496
[2026-03-02 13:11:21] 2026-03-02 18:10:42,327 | INFO     | sum of square deviations: 3485088600.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,328 | INFO     | sum of deviations: 8428853699.499996
[2026-03-02 13:11:21] 2026-03-02 18:10:42,328 | INFO     | mean x: 1772467892.5
[2026-03-02 13:11:21] 2026-03-02 18:10:42,329 | INFO     | mean y: 2344176.2276785714
[2026-03-02 13:11:21] 2026-03-02 18:10:42,329 | INFO     | intersect: -4284454315.1919045
[2026-03-02 13:11:21] 2026-03-02 18:10:42,329 | INFO     | chi2: 1.4188892980837446
[2026-03-02 13:11:21] 2026-03-02 18:10:42,329 | INFO     | current chi2=1.4188892980837446 (change=32.59492542615648 %)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,330 | INFO     | sum of square deviations: 3256879670.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,332 | INFO     | sum of deviations: 8346195680.000005
[2026-03-02 13:11:21] 2026-03-02 18:10:42,332 | INFO     | mean x: 1772467740.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,332 | INFO     | mean y: 2344120.98630137
[2026-03-02 13:11:21] 2026-03-02 18:10:42,332 | INFO     | intersect: -4539844751.016873
[2026-03-02 13:11:21] 2026-03-02 18:10:42,332 | INFO     | chi2: 1.4194525219919838
[2026-03-02 13:11:21] 2026-03-02 18:10:42,333 | INFO     | current chi2=1.4194525219919838 (change=-0.03969470409000928 %)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,333 | INFO     | right removable region: 218
[2026-03-02 13:11:21] 2026-03-02 18:10:42,333 | INFO     | sum of square deviations: 3485088600.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,335 | INFO     | sum of deviations: -34926942203.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,335 | INFO     | mean x: 1772468197.5
[2026-03-02 13:11:21] 2026-03-02 18:10:42,335 | INFO     | mean y: 2354511.598214286
[2026-03-02 13:11:21] 2026-03-02 18:10:42,335 | INFO     | intersect: 17765717626.8826
[2026-03-02 13:11:21] 2026-03-02 18:10:42,336 | INFO     | chi2: 0.7371043876562847
[2026-03-02 13:11:21] 2026-03-02 18:10:42,336 | INFO     | current chi2=0.7371043876562847 (change=64.98347243454458 %)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,336 | INFO     | sum of square deviations: 3256879670.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,338 | INFO     | sum of deviations: -33679093934.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,338 | INFO     | mean x: 1772468350.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,338 | INFO     | mean y: 2353673.484018265
[2026-03-02 13:11:21] 2026-03-02 18:10:42,339 | INFO     | intersect: 18331286303.25231
[2026-03-02 13:11:21] 2026-03-02 18:10:42,339 | INFO     | chi2: 0.7368847738360063
[2026-03-02 13:11:21] 2026-03-02 18:10:42,339 | INFO     | current chi2=0.7368847738360063 (change=0.029794127393102783 %)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,339 | INFO     | left removable region: 20
[2026-03-02 13:11:21] 2026-03-02 18:10:42,340 | INFO     | sum of square deviations: 2406926989.5
[2026-03-02 13:11:21] 2026-03-02 18:10:42,341 | INFO     | sum of deviations: -15699537975.0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,341 | INFO     | mean x: 1772468319.5
[2026-03-02 13:11:21] 2026-03-02 18:10:42,341 | INFO     | mean y: 2360450.01010101
[2026-03-02 13:11:21] 2026-03-02 18:10:42,341 | INFO     | intersect: 11563547728.588617
[2026-03-02 13:11:21] 2026-03-02 18:10:42,342 | INFO     | chi2: 0.03247023469444457
[2026-03-02 13:11:21] 2026-03-02 18:10:42,342 | INFO     | current memory leak: -6.52 B/s (using 198 data points, chi2=0.03)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,343 | INFO     | could have reported an average CPU frequency of 2538 MHz (11 samples)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,343 | INFO     | ..............................
[2026-03-02 13:11:21] 2026-03-02 18:10:42,343 | INFO     | . Timing measurements:
[2026-03-02 13:11:21] 2026-03-02 18:10:42,343 | INFO     | . get job = 0 s
[2026-03-02 13:11:21] 2026-03-02 18:10:42,343 | INFO     | . initial setup = 1 s
[2026-03-02 13:11:21] 2026-03-02 18:10:42,343 | INFO     | . payload setup = 4 s
[2026-03-02 13:11:21] 2026-03-02 18:10:42,343 | INFO     | . stage-in = 0 s
[2026-03-02 13:11:21] 2026-03-02 18:10:42,343 | INFO     | . payload execution = 13944 s
[2026-03-02 13:11:21] 2026-03-02 18:10:42,344 | INFO     | . stage-out = 2 s
[2026-03-02 13:11:21] 2026-03-02 18:10:42,344 | INFO     | . log creation = 0 s
[2026-03-02 13:11:21] 2026-03-02 18:10:42,344 | INFO     | ..............................
[2026-03-02 13:11:21] 2026-03-02 18:10:42,457 | INFO     | 
[2026-03-02 13:11:21] 2026-03-02 18:10:42,458 | INFO     | job summary report
[2026-03-02 13:11:21] 2026-03-02 18:10:42,458 | INFO     | --------------------------------------------------
[2026-03-02 13:11:21] 2026-03-02 18:10:42,458 | INFO     | PanDA job id: 7035863911
[2026-03-02 13:11:21] 2026-03-02 18:10:42,458 | INFO     | task id: 48838462
[2026-03-02 13:11:21] 2026-03-02 18:10:42,458 | INFO     | errors: (none)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,458 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | pilot state: finished 
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | transexitcode: 0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | exeerrorcode: 0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | exeerrordiag: 
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | exitcode: 0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | exitmsg: OK
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | cpuconsumptiontime: 54530 s
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | nevents: 400
[2026-03-02 13:11:21] 2026-03-02 18:10:42,459 | INFO     | neventsw: 0
[2026-03-02 13:11:21] 2026-03-02 18:10:42,460 | INFO     | pid: 30209
[2026-03-02 13:11:21] 2026-03-02 18:10:42,460 | INFO     | pgrp: 30209
[2026-03-02 13:11:21] 2026-03-02 18:10:42,460 | INFO     | corecount: 4
[2026-03-02 13:11:21] 2026-03-02 18:10:42,460 | INFO     | event service: False
[2026-03-02 13:11:21] 2026-03-02 18:10:42,460 | INFO     | sizes: {0: 2281800, 1: 2282317, 11: 2282317, 13952: 2312829, 13956: 2321913, 13959: 2322051}
[2026-03-02 13:11:21] 2026-03-02 18:10:42,460 | INFO     | --------------------------------------------------
[2026-03-02 13:11:21] 2026-03-02 18:10:42,460 | INFO     | 
[2026-03-02 13:11:21] 2026-03-02 18:10:42,460 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/21
[2026-03-02 13:11:21] 2026-03-02 18:10:42,481 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,481 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,481 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,482 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,482 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,482 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,482 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,482 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,483 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 13:11:21] 2026-03-02 18:10:42,484 | INFO     | job 7035863911 has completed (purged errors)
[2026-03-02 13:11:21] 2026-03-02 18:10:42,484 | INFO     | overall cleanup function is called
[2026-03-02 13:11:21] 2026-03-02 18:10:43,492 | INFO     | --- collectZombieJob: --- 10, [30209]
[2026-03-02 13:11:21] 2026-03-02 18:10:43,492 | INFO     | zombie collector waiting for pid 30209
[2026-03-02 13:11:21] 2026-03-02 18:10:43,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 13:11:21] 2026-03-02 18:10:43,492 | INFO     | collected zombie processes
[2026-03-02 13:11:21] 2026-03-02 18:10:43,492 | INFO     | will attempt to kill all subprocesses of pid=30209
[2026-03-02 13:11:21] 2026-03-02 18:10:43,757 | INFO     | process IDs to be killed: [30209] (in reverse order)
[2026-03-02 13:11:21] 2026-03-02 18:10:43,827 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 13:11:21] 2026-03-02 18:10:43,828 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 13:11:21] 2026-03-02 18:10:43,833 | INFO     | did not find any defunct processes belonging to 30209
[2026-03-02 13:11:21] 2026-03-02 18:10:43,839 | INFO     | did not find any defunct processes belonging to 30209
[2026-03-02 13:11:21] 2026-03-02 18:10:43,839 | INFO     | ready for new job
[2026-03-02 13:11:21] 2026-03-02 18:10:43,840 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 13:11:21] 2026-03-02 18:10:43,842 | INFO     | **************************************
[2026-03-02 13:11:21] 2026-03-02 18:10:43,842 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 13:11:21] 2026-03-02 18:10:43,842 | INFO     | **************************************
[2026-03-02 13:11:21] 2026-03-02 18:10:43,842 | INFO     | 
[2026-03-02 13:11:21] 2026-03-02 18:10:43,844 | INFO     | architecture information:
[2026-03-02 13:11:21] 2026-03-02 18:10:43,845 | INFO     | executing command: cat /etc/os-release
[2026-03-02 13:11:21] 2026-03-02 18:10:43,858 | INFO     | cat /etc/os-release:
[2026-03-02 13:11:21] NAME="CentOS Linux"
[2026-03-02 13:11:21] VERSION="7 (Core)"
[2026-03-02 13:11:21] ID="centos"
[2026-03-02 13:11:21] ID_LIKE="rhel fedora"
[2026-03-02 13:11:21] VERSION_ID="7"
[2026-03-02 13:11:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 13:11:21] ANSI_COLOR="0;31"
[2026-03-02 13:11:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 13:11:21] HOME_URL="https://www.centos.org/"
[2026-03-02 13:11:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 13:11:21] 
[2026-03-02 13:11:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 13:11:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 13:11:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 13:11:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 13:11:21] 
[2026-03-02 13:11:21] 2026-03-02 18:10:43,858 | INFO     | **************************************
[2026-03-02 13:11:21] 2026-03-02 18:10:44,361 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/21
[2026-03-02 13:11:21] 2026-03-02 18:10:44,377 | INFO     | sufficient remaining disk space (408725487616 B)
[2026-03-02 13:11:21] 2026-03-02 18:10:44,377 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 13:11:21] 2026-03-02 18:10:44,377 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 13:11:21] 2026-03-02 18:10:44,377 | INFO     | update_server=False
[2026-03-02 13:11:21] 2026-03-02 18:10:44,377 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 13:11:21] 2026-03-02 18:10:44,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 13:11:21] 2026-03-02 18:10:44,677 | INFO     | all job control threads have been joined
[2026-03-02 13:11:21] 2026-03-02 18:10:44,753 | INFO     | all data control threads have been joined
[2026-03-02 13:11:21] 2026-03-02 18:10:44,787 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 13:11:21] 2026-03-02 18:10:44,787 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 13:11:21] 2026-03-02 18:10:44,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 13:11:21] 2026-03-02 18:10:44,787 | INFO     | will abort loop
[2026-03-02 13:11:21] 2026-03-02 18:10:44,860 | INFO     | all payload control threads have been joined
[2026-03-02 13:11:21] 2026-03-02 18:10:45,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 13:11:21] 2026-03-02 18:10:45,383 | INFO     | [job] retrieve thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:45,387 | INFO     | [job] queue monitor thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:45,682 | INFO     | [job] control thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:45,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 13:11:21] 2026-03-02 18:10:45,758 | INFO     | [data] control thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:45,793 | INFO     | [job] job monitor thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:45,843 | INFO     | [job] validate thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:45,865 | INFO     | [payload] control thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:45,926 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:45,966 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:46,006 | INFO     | [payload] validate_post thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:46,112 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:46,434 | INFO     | [data] copytool_in thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:46,831 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:46,932 | INFO     | [payload] failed_post thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:47,096 | INFO     | [data] copytool_out thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:10:49,713 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 13:11:21] 2026-03-02 18:11:14,328 | INFO     | PID=21106 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-02 13:11:21] 2026-03-02 18:11:14,328 | INFO     | .. there are 4 such processes running
[2026-03-02 13:11:21] 2026-03-02 18:11:14,328 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 13:11:21] 2026-03-02 18:11:14,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 13:11:21] 2026-03-02 18:11:14,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 13:11:21] 2026-03-02 18:11:14,700 | INFO     | [monitor] cgroup control has ended
[2026-03-02 13:11:21] 2026-03-02 18:11:15,706 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135166713636672)>', '<ExcThread(monitor, started 135166076892928)>']
[2026-03-02 13:11:21] 2026-03-02 18:11:16,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 13:11:21] 2026-03-02 18:11:16,339 | INFO     | [monitor] control thread has ended
[2026-03-02 13:11:21] 2026-03-02 18:11:20,731 | INFO     | all workflow threads have been joined
[2026-03-02 13:11:21] 2026-03-02 18:11:20,731 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 13:11:21] 2026-03-02 18:11:20,732 | INFO     | traces error code: 0
[2026-03-02 13:11:21] 2026-03-02 18:11:20,732 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 13:11:21] 2026-03-02 18:11:20,854 [wrapper] ==== pilot stdout END ====
[2026-03-02 13:11:21] 2026-03-02 18:11:20,860 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 13:11:21] 2026-03-02 18:11:20,863 [wrapper] pilotpid: 21106
[2026-03-02 13:11:21] 2026-03-02 18:11:20,866 [wrapper] Pilot exit status: 0
[2026-03-02 13:11:21] 2026-03-02 18:11:20,878 [wrapper] pandaids: 7035863911 7035863911
[2026-03-02 13:11:21] 2026-03-02 18:11:20,916 [wrapper] cleanup supervisor_pilot   57204 21109
[2026-03-02 13:11:21] 2026-03-02 18:11:20,921 [wrapper] Test setup, not cleaning
[2026-03-02 13:11:21] 2026-03-02 18:11:20,923 [wrapper] apfmon messages muted
[2026-03-02 13:11:21] 2026-03-02 18:11:20,926 [wrapper] ==== wrapper stdout END ====
[2026-03-02 13:11:21] 2026-03-02 18:11:20,928 [wrapper] ==== wrapper stderr END ====
[2026-03-02 13:11:21]  *** Error codes and diagnostics ***
[2026-03-02 13:11:21]     "exeErrorCode": 0,
[2026-03-02 13:11:21]     "exeErrorDiag": "",
[2026-03-02 13:11:21]     "pilotErrorCode": 0,
[2026-03-02 13:11:21]     "pilotErrorDiag": "",
[2026-03-02 13:11:21]  *** Listing of results directory ***
[2026-03-02 13:11:21] total 756916
[2026-03-02 13:11:21] drwx------ 5 whitlerd whitlerd      4096 Feb  2 10:00 pilot3
[2026-03-02 13:11:21] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  2 02:34 queuedata.json
[2026-03-02 13:11:21] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  2 02:34 pilot3.tar.gz
[2026-03-02 13:11:21] -rwx------ 1 whitlerd whitlerd     36322 Mar  2 02:34 runpilot2-wrapper.sh
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  2 06:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 13:11:21] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  2 06:47 run_atlas
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  2 06:47 job.xml
[2026-03-02 13:11:21] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  2 06:47 start_atlas.sh
[2026-03-02 13:11:21] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  2 06:47 shared
[2026-03-02 13:11:21] -rw-r--r-- 2 whitlerd whitlerd    597956 Mar  2 06:47 input.tar.gz
[2026-03-02 13:11:21] -rw-r--r-- 3 whitlerd whitlerd 279510973 Mar  2 06:47 EVNT.48220133._000236.pool.root.1
[2026-03-02 13:11:21] -rw-r--r-- 3 whitlerd whitlerd 279510973 Mar  2 06:47 ATLAS.root_0
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  2 06:47 boinc_setup_complete
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  2 06:47 boinc_lockfile
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd      2562 Mar  2 09:17 pandaJob.out
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd    998107 Mar  2 09:17 agis_schedconf.cvmfs.json
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd       423 Mar  2 09:17 workernode_map.json
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd      9094 Mar  2 09:18 init_data.xml
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd 207325760 Mar  2 13:09 HITS.48838462._005533.pool.root.1
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd       531 Mar  2 13:09 boinc_task_state.xml
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd        96 Mar  2 13:10 pilot_heartbeat.json
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd      1039 Mar  2 13:10 memory_monitor_summary.json
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd   1512931 Mar  2 13:10 agis_ddmendpoints.agis.ALL.json
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd    399863 Mar  2 13:10 log.48838462._005533.job.log.tgz.1
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd      6350 Mar  2 13:10 heartbeat.json
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  2 13:11 boinc_mmap_file
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar  2 13:11 wrapper_checkpoint.txt
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd      5019 Mar  2 13:11 pilotlog.txt
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd   2001232 Mar  2 13:11 log.48838462._005533.job.log.1
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd       357 Mar  2 13:11 output.list
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  2 13:11 runtime_log
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd   2416640 Mar  2 13:11 result.tar.gz
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd       779 Mar  2 13:11 wGYNDmRyCH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm6rALDmIDnk0n.diag
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd      9121 Mar  2 13:11 runtime_log.err
[2026-03-02 13:11:21] -rw-rw-r-- 1 whitlerd whitlerd     23330 Mar  2 13:11 stderr.txt
[2026-03-02 13:11:21] HITS file was successfully produced:
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd 207325760 Mar  2 13:09 shared/HITS.pool.root.1
[2026-03-02 13:11:21]  *** Contents of shared directory: ***
[2026-03-02 13:11:21] total 478396
[2026-03-02 13:11:21] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  2 06:47 start_atlas.sh
[2026-03-02 13:11:21] -rw-r--r-- 2 whitlerd whitlerd    597956 Mar  2 06:47 input.tar.gz
[2026-03-02 13:11:21] -rw-r--r-- 3 whitlerd whitlerd 279510973 Mar  2 06:47 ATLAS.root_0
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd 207325760 Mar  2 13:09 HITS.pool.root.1
[2026-03-02 13:11:21] -rw------- 1 whitlerd whitlerd   2416640 Mar  2 13:11 result.tar.gz
13:11:22 (4946): run_atlas exited; CPU time 54976.141181
13:11:22 (4946): called boinc_finish(0)

</stderr_txt>
]]>

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