Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:36:04 (745350): wrapper (7.7.26015): starting
12:36:04 (745350): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 12:36:04] Arguments: --nthreads 3
[2026-03-02 12:36:04] Threads: 3
[2026-03-02 12:36:04] Checking for CVMFS
[2026-03-02 12:36:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 12:36:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 12:36:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 12:36:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 12:36:05] 2.9.2.0 2927 5441 81544 156805 2 50 5692191 36864000 0 130560 0 2089257 99.981 202942 13167 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 12:36:05] CVMFS is ok
[2026-03-02 12:36:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 12:36:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 12:36:05] Further information can be found at the LHC@home message board.
[2026-03-02 12:36:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 12:36:05] Checking for apptainer binary...
[2026-03-02 12:36:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 12:36:05] Running /usr/bin/apptainer --version
[2026-03-02 12:36:05] apptainer version 1.4.1-1.1
[2026-03-02 12:36:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 12:36:05] belleA259
[2026-03-02 12:36:05] apptainer works
[2026-03-02 12:36:05] Set ATHENA_PROC_NUMBER=3
[2026-03-02 12:36:05] Set ATHENA_CORE_NUMBER=3
[2026-03-02 12:36:05] Starting ATLAS job with PandaID=7035863627
[2026-03-02 12:36:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 14:10:33]  *** The last 200 lines of the pilot log: ***
[2026-03-02 14:10:33] 2026-03-02 13:10:01,995 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 14:10:33] 2026-03-02 13:10:01,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 14:10:33] 2026-03-02 13:10:01,995 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 14:10:33] 2026-03-02 13:10:01,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 14:10:33] 2026-03-02 13:10:01,995 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 14:10:33] 2026-03-02 13:10:01,995 | INFO     | job 7035863627 has completed (purged errors)
[2026-03-02 14:10:33] 2026-03-02 13:10:01,995 | INFO     | overall cleanup function is called
[2026-03-02 14:10:33] 2026-03-02 13:10:02,999 | INFO     | --- collectZombieJob: --- 10, [753804]
[2026-03-02 14:10:33] 2026-03-02 13:10:02,999 | INFO     | zombie collector waiting for pid 753804
[2026-03-02 14:10:33] 2026-03-02 13:10:03,000 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 14:10:33] 2026-03-02 13:10:03,000 | INFO     | collected zombie processes
[2026-03-02 14:10:33] 2026-03-02 13:10:03,000 | INFO     | will attempt to kill all subprocesses of pid=753804
[2026-03-02 14:10:33] 2026-03-02 13:10:03,040 | INFO     | process IDs to be killed: [753804] (in reverse order)
[2026-03-02 14:10:33] 2026-03-02 13:10:03,065 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 14:10:33] 2026-03-02 13:10:03,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 14:10:33] 2026-03-02 13:10:03,067 | INFO     | did not find any defunct processes belonging to 753804
[2026-03-02 14:10:33] 2026-03-02 13:10:03,068 | INFO     | did not find any defunct processes belonging to 753804
[2026-03-02 14:10:33] 2026-03-02 13:10:03,068 | INFO     | ready for new job
[2026-03-02 14:10:33] 2026-03-02 13:10:03,068 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 14:10:33] 2026-03-02 13:10:03,069 | INFO     | **************************************
[2026-03-02 14:10:33] 2026-03-02 13:10:03,069 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 14:10:33] 2026-03-02 13:10:03,069 | INFO     | **************************************
[2026-03-02 14:10:33] 2026-03-02 13:10:03,069 | INFO     | 
[2026-03-02 14:10:33] 2026-03-02 13:10:03,069 | INFO     | architecture information:
[2026-03-02 14:10:33] 2026-03-02 13:10:03,069 | INFO     | executing command: cat /etc/os-release
[2026-03-02 14:10:33] 2026-03-02 13:10:03,079 | INFO     | cat /etc/os-release:
[2026-03-02 14:10:33] NAME="CentOS Linux"
[2026-03-02 14:10:33] VERSION="7 (Core)"
[2026-03-02 14:10:33] ID="centos"
[2026-03-02 14:10:33] ID_LIKE="rhel fedora"
[2026-03-02 14:10:33] VERSION_ID="7"
[2026-03-02 14:10:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 14:10:33] ANSI_COLOR="0;31"
[2026-03-02 14:10:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 14:10:33] HOME_URL="https://www.centos.org/"
[2026-03-02 14:10:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 14:10:33] 
[2026-03-02 14:10:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 14:10:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 14:10:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 14:10:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 14:10:33] 
[2026-03-02 14:10:33] 2026-03-02 13:10:03,079 | INFO     | **************************************
[2026-03-02 14:10:33] 2026-03-02 13:10:03,582 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 14:10:33] 2026-03-02 13:10:03,596 | INFO     | sufficient remaining disk space (356111089664 B)
[2026-03-02 14:10:33] 2026-03-02 13:10:03,596 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 14:10:33] 2026-03-02 13:10:03,596 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 14:10:33] 2026-03-02 13:10:03,596 | INFO     | update_server=False
[2026-03-02 14:10:33] 2026-03-02 13:10:03,596 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 14:10:33] 2026-03-02 13:10:03,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 14:10:33] 2026-03-02 13:10:03,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 14:10:33] 2026-03-02 13:10:03,761 | INFO     | all data control threads have been joined
[2026-03-02 14:10:33] 2026-03-02 13:10:04,125 | WARNING  | process 753804 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 14:10:33] 2026-03-02 13:10:04,152 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 14:10:33] 2026-03-02 13:10:04,187 | INFO     | number of running child processes to parent process 753804: 1
[2026-03-02 14:10:33] 2026-03-02 13:10:04,187 | INFO     | maximum number of monitored processes: 6
[2026-03-02 14:10:33] 2026-03-02 13:10:04,187 | INFO     | aborting job monitoring since job object (job id=7035863627) has expired
[2026-03-02 14:10:33] 2026-03-02 13:10:04,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 14:10:33] 2026-03-02 13:10:04,187 | INFO     | will abort loop
[2026-03-02 14:10:33] 2026-03-02 13:10:04,212 | INFO     | all payload control threads have been joined
[2026-03-02 14:10:33] 2026-03-02 13:10:04,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 14:10:33] 2026-03-02 13:10:04,602 | INFO     | [job] queue monitor thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:04,602 | INFO     | [job] retrieve thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:04,767 | INFO     | [data] control thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:04,871 | INFO     | all job control threads have been joined
[2026-03-02 14:10:33] 2026-03-02 13:10:04,885 | INFO     | [payload] failed_post thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:05,193 | INFO     | [job] job monitor thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:05,213 | INFO     | [payload] control thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:05,414 | INFO     | [payload] validate_post thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:05,601 | INFO     | [job] validate thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:05,734 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:05,833 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:05,877 | INFO     | [job] control thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:05,881 | INFO     | [data] copytool_in thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:06,098 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:06,509 | INFO     | [data] copytool_out thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:07,603 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:14,085 | INFO     | job.realtimelogging is not enabled
[2026-03-02 14:10:33] 2026-03-02 13:10:15,090 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 14:10:33] 2026-03-02 13:10:21,289 | INFO     | [monitor] cgroup control has ended
[2026-03-02 14:10:33] 2026-03-02 13:10:22,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139923816978240)>', '<ExcThread(monitor, started 139923189397248)>']
[2026-03-02 14:10:33] 2026-03-02 13:10:27,841 | INFO     | all workflow threads have been joined
[2026-03-02 14:10:33] 2026-03-02 13:10:27,841 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 14:10:33] 2026-03-02 13:10:27,841 | INFO     | traces error code: 0
[2026-03-02 14:10:33] 2026-03-02 13:10:27,842 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 14:10:33] 2026-03-02 13:10:33,298 | INFO     | PID=749382 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 14:10:33] 2026-03-02 13:10:33,298 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 14:10:33] 2026-03-02 13:10:33,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 14:10:33] 2026-03-02 13:10:33,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 14:10:33] 2026-03-02 13:10:33,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 14:10:33] 2026-03-02 13:10:33,298 | INFO     | [monitor] control thread has ended
[2026-03-02 14:10:33] 2026-03-02 13:10:33,344 [wrapper] ==== pilot stdout END ====
[2026-03-02 14:10:33] 2026-03-02 13:10:33,347 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 14:10:33] 2026-03-02 13:10:33,350 [wrapper] pilotpid: 749382
[2026-03-02 14:10:33] 2026-03-02 13:10:33,352 [wrapper] Pilot exit status: 0
[2026-03-02 14:10:33] 2026-03-02 13:10:33,360 [wrapper] pandaids: 7035863627
[2026-03-02 14:10:33] 2026-03-02 13:10:33,377 [wrapper] cleanup supervisor_pilot  759239 749383
[2026-03-02 14:10:33] 2026-03-02 13:10:33,379 [wrapper] Test setup, not cleaning
[2026-03-02 14:10:33] 2026-03-02 13:10:33,382 [wrapper] apfmon messages muted
[2026-03-02 14:10:33] 2026-03-02 13:10:33,384 [wrapper] ==== wrapper stdout END ====
[2026-03-02 14:10:33] 2026-03-02 13:10:33,387 [wrapper] ==== wrapper stderr END ====
[2026-03-02 14:10:33]  *** Error codes and diagnostics ***
[2026-03-02 14:10:33]     "exeErrorCode": 0,
[2026-03-02 14:10:33]     "exeErrorDiag": "",
[2026-03-02 14:10:33]     "pilotErrorCode": 0,
[2026-03-02 14:10:33]     "pilotErrorDiag": "",
[2026-03-02 14:10:33]  *** Listing of results directory ***
[2026-03-02 14:10:33] total 469208
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc    584627 Mar  2 08:34 pilot3.tar.gz
[2026-03-02 14:10:33] -rwx------ 1 boinc boinc     36322 Mar  2 08:34 runpilot2-wrapper.sh
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc      5111 Mar  2 08:35 queuedata.json
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc       100 Mar  2 12:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 14:10:33] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 12:36 run_atlas
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc       105 Mar  2 12:36 job.xml
[2026-03-02 14:10:33] -rw-r--r-- 2 boinc boinc 269689172 Mar  2 12:36 EVNT.48343683._000094.pool.root.1
[2026-03-02 14:10:33] -rw-r--r-- 2 boinc boinc    597959 Mar  2 12:36 input.tar.gz
[2026-03-02 14:10:33] -rw-r--r-- 2 boinc boinc     15845 Mar  2 12:36 start_atlas.sh
[2026-03-02 14:10:33] drwxrwx--x 2 boinc boinc      4096 Mar  2 12:36 shared
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc         0 Mar  2 12:36 boinc_setup_complete
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc      6445 Mar  2 12:36 init_data.xml
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc         0 Mar  2 12:36 boinc_lockfile
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc      2563 Mar  2 12:36 pandaJob.out
[2026-03-02 14:10:33] -rw------- 1 boinc boinc    998151 Mar  2 12:36 agis_schedconf.cvmfs.json
[2026-03-02 14:10:33] -rw------- 1 boinc boinc   1513015 Mar  2 12:36 agis_ddmendpoints.agis.ALL.json
[2026-03-02 14:10:33] -rw------- 1 boinc boinc       426 Mar  2 12:36 workernode_map.json
[2026-03-02 14:10:33] drwx------ 5 boinc boinc      4096 Mar  2 12:36 pilot3
[2026-03-02 14:10:33] -rw------- 1 boinc boinc        95 Mar  2 14:09 pilot_heartbeat.json
[2026-03-02 14:10:33] -rw------- 1 boinc boinc 204692264 Mar  2 14:09 HITS.48838521._002229.pool.root.1
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc       529 Mar  2 14:09 boinc_task_state.xml
[2026-03-02 14:10:33] -rw------- 1 boinc boinc      1024 Mar  2 14:09 memory_monitor_summary.json
[2026-03-02 14:10:33] -rw------- 1 boinc boinc    266898 Mar  2 14:10 log.48838521._002229.job.log.tgz.1
[2026-03-02 14:10:33] -rw------- 1 boinc boinc      6298 Mar  2 14:10 heartbeat.json
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc        27 Mar  2 14:10 wrapper_checkpoint.txt
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc      8192 Mar  2 14:10 boinc_mmap_file
[2026-03-02 14:10:33] -rw------- 1 boinc boinc       746 Mar  2 14:10 pilotlog.txt
[2026-03-02 14:10:33] -rw------- 1 boinc boinc    818286 Mar  2 14:10 log.48838521._002229.job.log.1
[2026-03-02 14:10:33] -rw------- 1 boinc boinc       357 Mar  2 14:10 output.list
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc       620 Mar  2 14:10 runtime_log
[2026-03-02 14:10:33] -rw------- 1 boinc boinc   1105920 Mar  2 14:10 result.tar.gz
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc      8911 Mar  2 14:10 runtime_log.err
[2026-03-02 14:10:33] -rw------- 1 boinc boinc       660 Mar  2 14:10 CMUNDmayCH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmZsCLDmRTkqDn.diag
[2026-03-02 14:10:33] -rw-r--r-- 1 boinc boinc     12028 Mar  2 14:10 stderr.txt
[2026-03-02 14:10:33] HITS file was successfully produced:
[2026-03-02 14:10:33] -rw------- 1 boinc boinc 204692264 Mar  2 14:09 shared/HITS.pool.root.1
[2026-03-02 14:10:33]  *** Contents of shared directory: ***
[2026-03-02 14:10:33] total 464956
[2026-03-02 14:10:33] -rw-r--r-- 2 boinc boinc 269689172 Mar  2 12:36 ATLAS.root_0
[2026-03-02 14:10:33] -rw-r--r-- 2 boinc boinc    597959 Mar  2 12:36 input.tar.gz
[2026-03-02 14:10:33] -rw-r--r-- 2 boinc boinc     15845 Mar  2 12:36 start_atlas.sh
[2026-03-02 14:10:33] -rw------- 1 boinc boinc 204692264 Mar  2 14:09 HITS.pool.root.1
[2026-03-02 14:10:33] -rw------- 1 boinc boinc   1105920 Mar  2 14:10 result.tar.gz
14:10:35 (745350): run_atlas exited; CPU time 16117.721353
14:10:35 (745350): called boinc_finish(0)

</stderr_txt>
]]>

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