Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:30:48 (21442): wrapper (7.7.26015): starting
02:30:48 (21442): wrapper: running run_atlas (--nthreads 8)
[2026-03-03 02:30:48] Arguments: --nthreads 8
[2026-03-03 02:30:48] Threads: 8
[2026-03-03 02:30:48] Checking for CVMFS
[2026-03-03 02:30:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 02:30:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 02:30:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 02:30:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 02:30:50] 2.11.2.0 21704 111078 136028 156827 2 53 15677840 25165825 899 130560 161 38141622 99.807 30829739 1091 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-03 02:30:50] CVMFS is ok
[2026-03-03 02:30:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 02:30:50] Checking for apptainer binary...
[2026-03-03 02:30:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 02:30:50] Running /usr/bin/apptainer --version
[2026-03-03 02:30:51] apptainer version 1.3.2-1.el7
[2026-03-03 02:30:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 02:31:14] cg-vwn497.simple-grid.lan
[2026-03-03 02:31:14] apptainer works
[2026-03-03 02:31:14] Set ATHENA_PROC_NUMBER=8
[2026-03-03 02:31:14] Set ATHENA_CORE_NUMBER=8
[2026-03-03 02:31:14] Starting ATLAS job with PandaID=7035978547
[2026-03-03 02:31:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 07:03:40]  *** The last 200 lines of the pilot log: ***
[2026-03-03 07:03:40] 2026-03-03 06:02:44,206 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-7035978547/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,207 | INFO     | extracted standard info from prmon json
[2026-03-03 07:03:40] 2026-03-03 06:02:44,207 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 07:03:40] 2026-03-03 06:02:44,207 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 07:03:40] 2026-03-03 06:02:44,208 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 07:03:40] 2026-03-03 06:02:44,208 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 07:03:40] 2026-03-03 06:02:44,213 | INFO     | fitting pss+swap vs Time
[2026-03-03 07:03:40] 2026-03-03 06:02:44,214 | INFO     | sum of square deviations: 5202255680.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,216 | INFO     | sum of deviations: 101659865065.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,216 | INFO     | mean x: 1772509964.5
[2026-03-03 07:03:40] 2026-03-03 06:02:44,216 | INFO     | mean y: 2439326.0390625
[2026-03-03 07:03:40] 2026-03-03 06:02:44,216 | INFO     | intersect: -34635059270.99989
[2026-03-03 07:03:40] 2026-03-03 06:02:44,217 | INFO     | chi2: 8.873775956310224
[2026-03-03 07:03:40] 2026-03-03 06:02:44,217 | INFO     | sum of square deviations: 4903347750.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,220 | INFO     | sum of deviations: 133879011473.00005
[2026-03-03 07:03:40] 2026-03-03 06:02:44,220 | INFO     | mean x: 1772509812.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,220 | INFO     | mean y: 2455554.2270916332
[2026-03-03 07:03:40] 2026-03-03 06:02:44,220 | INFO     | intersect: -48393431002.41234
[2026-03-03 07:03:40] 2026-03-03 06:02:44,220 | INFO     | chi2: 7.382345153705637
[2026-03-03 07:03:40] 2026-03-03 06:02:44,221 | INFO     | current chi2=7.382345153705637 (change=16.807172166027218 %)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,221 | INFO     | right removable region: 250
[2026-03-03 07:03:40] 2026-03-03 06:02:44,225 | INFO     | sum of square deviations: 4903347750.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,228 | INFO     | sum of deviations: 12243835820.000015
[2026-03-03 07:03:40] 2026-03-03 06:02:44,228 | INFO     | mean x: 1772510117.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,228 | INFO     | mean y: 2484918.262948207
[2026-03-03 07:03:40] 2026-03-03 06:02:44,228 | INFO     | intersect: -4423536642.585356
[2026-03-03 07:03:40] 2026-03-03 06:02:44,228 | INFO     | chi2: 3.9422611842395954
[2026-03-03 07:03:40] 2026-03-03 06:02:44,229 | INFO     | current chi2=3.9422611842395954 (change=55.574028422069674 %)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,229 | INFO     | sum of square deviations: 4616114457.5
[2026-03-03 07:03:40] 2026-03-03 06:02:44,231 | INFO     | sum of deviations: -45811166255.5
[2026-03-03 07:03:40] 2026-03-03 06:02:44,231 | INFO     | mean x: 1772510269.5
[2026-03-03 07:03:40] 2026-03-03 06:02:44,231 | INFO     | mean y: 2515642.573170732
[2026-03-03 07:03:40] 2026-03-03 06:02:44,232 | INFO     | intersect: 17593232552.48757
[2026-03-03 07:03:40] 2026-03-03 06:02:44,232 | INFO     | chi2: 1.82664484599184
[2026-03-03 07:03:40] 2026-03-03 06:02:44,232 | INFO     | current chi2=1.82664484599184 (change=53.665047529209474 %)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,233 | INFO     | sum of square deviations: 4340323240.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,235 | INFO     | sum of deviations: -52558851354.00001
[2026-03-03 07:03:40] 2026-03-03 06:02:44,235 | INFO     | mean x: 1772510422.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,235 | INFO     | mean y: 2519350.0871369294
[2026-03-03 07:03:40] 2026-03-03 06:02:44,235 | INFO     | intersect: 21466614681.685947
[2026-03-03 07:03:40] 2026-03-03 06:02:44,235 | INFO     | chi2: 1.7772205080597145
[2026-03-03 07:03:40] 2026-03-03 06:02:44,236 | INFO     | current chi2=1.7772205080597145 (change=2.705744252396742 %)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,236 | INFO     | left removable region: 30
[2026-03-03 07:03:40] 2026-03-03 06:02:44,236 | INFO     | sum of square deviations: 3301699115.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,238 | INFO     | sum of deviations: 4493918129.0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,238 | INFO     | mean x: 1772510696.5
[2026-03-03 07:03:40] 2026-03-03 06:02:44,238 | INFO     | mean y: 2523177.618181818
[2026-03-03 07:03:40] 2026-03-03 06:02:44,238 | INFO     | intersect: -2410027959.055508
[2026-03-03 07:03:40] 2026-03-03 06:02:44,239 | INFO     | chi2: 0.0140030471152849
[2026-03-03 07:03:40] 2026-03-03 06:02:44,239 | INFO     | current memory leak: 1.36 B/s (using 220 data points, chi2=0.01)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | ..............................
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | . Timing measurements:
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | . get job = 0 s
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | . initial setup = 127 s
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | . payload setup = 161 s
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | . stage-in = 0 s
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | . payload execution = 15695 s
[2026-03-03 07:03:40] 2026-03-03 06:02:44,240 | INFO     | . stage-out = 4 s
[2026-03-03 07:03:40] 2026-03-03 06:02:44,241 | INFO     | . log creation = 1 s
[2026-03-03 07:03:40] 2026-03-03 06:02:44,241 | INFO     | ..............................
[2026-03-03 07:03:40] 2026-03-03 06:02:44,384 | INFO     | time since job start (15882s) is within the limit (349056.0s)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,490 | INFO     | 
[2026-03-03 07:03:40] 2026-03-03 06:02:44,490 | INFO     | job summary report
[2026-03-03 07:03:40] 2026-03-03 06:02:44,490 | INFO     | --------------------------------------------------
[2026-03-03 07:03:40] 2026-03-03 06:02:44,490 | INFO     | PanDA job id: 7035978547
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | task id: 48838586
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | errors: (none)
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | pilot state: finished 
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | transexitcode: 0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | exeerrorcode: 0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | exeerrordiag: 
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | exitcode: 0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | exitmsg: OK
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | cpuconsumptiontime: 59120 s
[2026-03-03 07:03:40] 2026-03-03 06:02:44,491 | INFO     | nevents: 400
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | neventsw: 0
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | pid: 29871
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | pgrp: 29871
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | corecount: 8
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | event service: False
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | sizes: {0: 2281790, 1: 2282251, 12: 2282251, 15860: 2313509, 15861: 2313508, 15865: 2322564, 15867: 2322748, 15870: 2322942}
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | --------------------------------------------------
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | 
[2026-03-03 07:03:40] 2026-03-03 06:02:44,492 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-03-03 07:03:40] 2026-03-03 06:02:45,010 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,011 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,011 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,011 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,011 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,011 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,011 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,011 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,012 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 07:03:40] 2026-03-03 06:02:45,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,013 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 07:03:40] 2026-03-03 06:02:45,013 | INFO     | job 7035978547 has completed (purged errors)
[2026-03-03 07:03:40] 2026-03-03 06:02:45,013 | INFO     | overall cleanup function is called
[2026-03-03 07:03:40] 2026-03-03 06:02:46,022 | INFO     | --- collectZombieJob: --- 10, [29871]
[2026-03-03 07:03:40] 2026-03-03 06:02:46,022 | INFO     | zombie collector waiting for pid 29871
[2026-03-03 07:03:40] 2026-03-03 06:02:46,022 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 07:03:40] 2026-03-03 06:02:46,023 | INFO     | collected zombie processes
[2026-03-03 07:03:40] 2026-03-03 06:02:46,023 | INFO     | will attempt to kill all subprocesses of pid=29871
[2026-03-03 07:03:40] 2026-03-03 06:02:46,090 | INFO     | process IDs to be killed: [29871] (in reverse order)
[2026-03-03 07:03:40] 2026-03-03 06:02:46,977 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 07:03:40] 2026-03-03 06:02:46,977 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 07:03:40] 2026-03-03 06:02:46,979 | INFO     | did not find any defunct processes belonging to 29871
[2026-03-03 07:03:40] 2026-03-03 06:02:46,981 | INFO     | did not find any defunct processes belonging to 29871
[2026-03-03 07:03:40] 2026-03-03 06:02:46,981 | INFO     | ready for new job
[2026-03-03 07:03:40] 2026-03-03 06:02:46,981 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 07:03:40] 2026-03-03 06:02:46,983 | INFO     | **************************************
[2026-03-03 07:03:40] 2026-03-03 06:02:46,983 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 07:03:40] 2026-03-03 06:02:46,983 | INFO     | **************************************
[2026-03-03 07:03:40] 2026-03-03 06:02:46,983 | INFO     | 
[2026-03-03 07:03:40] 2026-03-03 06:02:46,984 | INFO     | pilot is running in a VM
[2026-03-03 07:03:40] 2026-03-03 06:02:46,984 | INFO     | architecture information:
[2026-03-03 07:03:40] 2026-03-03 06:02:46,985 | INFO     | executing command: cat /etc/os-release
[2026-03-03 07:03:40] 2026-03-03 06:02:47,266 | INFO     | cat /etc/os-release:
[2026-03-03 07:03:40] NAME="CentOS Linux"
[2026-03-03 07:03:40] VERSION="7 (Core)"
[2026-03-03 07:03:40] ID="centos"
[2026-03-03 07:03:40] ID_LIKE="rhel fedora"
[2026-03-03 07:03:40] VERSION_ID="7"
[2026-03-03 07:03:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 07:03:40] ANSI_COLOR="0;31"
[2026-03-03 07:03:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 07:03:40] HOME_URL="https://www.centos.org/"
[2026-03-03 07:03:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 07:03:40] 
[2026-03-03 07:03:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 07:03:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 07:03:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 07:03:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 07:03:40] 
[2026-03-03 07:03:40] 2026-03-03 06:02:47,267 | INFO     | **************************************
[2026-03-03 07:03:40] 2026-03-03 06:02:47,770 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-03-03 07:03:40] 2026-03-03 06:02:48,072 | INFO     | sufficient remaining disk space (497406705664 B)
[2026-03-03 07:03:40] 2026-03-03 06:02:48,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 07:03:40] 2026-03-03 06:02:48,073 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 07:03:40] 2026-03-03 06:02:48,073 | INFO     | update_server=False
[2026-03-03 07:03:40] 2026-03-03 06:02:48,073 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 07:03:40] 2026-03-03 06:02:48,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 07:03:40] 2026-03-03 06:02:48,082 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 07:03:40] 2026-03-03 06:02:48,299 | INFO     | all data control threads have been joined
[2026-03-03 07:03:40] 2026-03-03 06:02:48,375 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-03 07:03:40] 2026-03-03 06:02:48,375 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-03 07:03:40] 2026-03-03 06:02:48,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 07:03:40] 2026-03-03 06:02:48,376 | INFO     | will abort loop
[2026-03-03 07:03:40] 2026-03-03 06:02:48,411 | INFO     | all payload control threads have been joined
[2026-03-03 07:03:40] 2026-03-03 06:02:48,746 | INFO     | all job control threads have been joined
[2026-03-03 07:03:40] 2026-03-03 06:02:49,079 | INFO     | [job] retrieve thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,261 | INFO     | [payload] failed_post thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,278 | INFO     | [data] copytool_in thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,305 | INFO     | [data] control thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 07:03:40] 2026-03-03 06:02:49,381 | INFO     | [job] job monitor thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,409 | INFO     | [job] validate thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,417 | INFO     | [payload] control thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,455 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,752 | INFO     | [job] control thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:49,872 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:50,081 | INFO     | [data] copytool_out thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:50,381 | INFO     | [job] queue monitor thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:50,469 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:50,532 | INFO     | [payload] validate_post thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:50,538 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:02:52,091 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 07:03:40] 2026-03-03 06:03:17,534 | INFO     | PID=25440 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-03 07:03:40] 2026-03-03 06:03:17,535 | INFO     | .. there are 2 such processes running
[2026-03-03 07:03:40] 2026-03-03 06:03:17,535 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 07:03:40] 2026-03-03 06:03:17,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 07:03:40] 2026-03-03 06:03:17,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 07:03:40] 2026-03-03 06:03:28,481 | INFO     | [monitor] cgroup control has ended
[2026-03-03 07:03:40] 2026-03-03 06:03:30,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140254021330752)>', '<ExcThread(monitor, started 140253222397696)>']
[2026-03-03 07:03:40] 2026-03-03 06:03:30,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 07:03:40] 2026-03-03 06:03:30,613 | INFO     | [monitor] control thread has ended
[2026-03-03 07:03:40] 2026-03-03 06:03:35,297 | INFO     | all workflow threads have been joined
[2026-03-03 07:03:40] 2026-03-03 06:03:35,297 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 07:03:40] 2026-03-03 06:03:35,297 | INFO     | traces error code: 0
[2026-03-03 07:03:40] 2026-03-03 06:03:35,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 07:03:40] 2026-03-03 06:03:35,687 [wrapper] ==== pilot stdout END ====
[2026-03-03 07:03:40] 2026-03-03 06:03:35,752 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 07:03:40] 2026-03-03 06:03:35,842 [wrapper] pilotpid: 25440
[2026-03-03 07:03:40] 2026-03-03 06:03:35,941 [wrapper] Pilot exit status: 0
[2026-03-03 07:03:40] 2026-03-03 06:03:36,429 [wrapper] pandaids: 7035978547
[2026-03-03 07:03:40] 2026-03-03 06:03:37,358 [wrapper] cleanup supervisor_pilot  3640 25441
[2026-03-03 07:03:40] 2026-03-03 06:03:37,470 [wrapper] Test setup, not cleaning
[2026-03-03 07:03:40] 2026-03-03 06:03:37,564 [wrapper] apfmon messages muted
[2026-03-03 07:03:40] 2026-03-03 06:03:37,686 [wrapper] ==== wrapper stdout END ====
[2026-03-03 07:03:40] 2026-03-03 06:03:37,788 [wrapper] ==== wrapper stderr END ====
[2026-03-03 07:03:40]  *** Error codes and diagnostics ***
[2026-03-03 07:03:40]     "exeErrorCode": 0,
[2026-03-03 07:03:40]     "exeErrorDiag": "",
[2026-03-03 07:03:40]     "pilotErrorCode": 0,
[2026-03-03 07:03:40]     "pilotErrorDiag": "",
[2026-03-03 07:03:40]  *** Listing of results directory ***
[2026-03-03 07:03:40] total 484824
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc    584627 Mar  2 11:57 pilot3.tar.gz
[2026-03-03 07:03:40] -rwx------. 1 boinc boinc     36322 Mar  2 12:00 runpilot2-wrapper.sh
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc      5111 Mar  2 12:02 queuedata.json
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc       100 Mar  3 02:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 07:03:40] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 02:30 run_atlas
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc       105 Mar  3 02:30 job.xml
[2026-03-03 07:03:40] -rw-r--r--. 2 boinc boinc 277955740 Mar  3 02:30 EVNT.48220221._000045.pool.root.1
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc      6391 Mar  3 02:30 init_data.xml
[2026-03-03 07:03:40] -rw-r--r--. 2 boinc boinc     15845 Mar  3 02:30 start_atlas.sh
[2026-03-03 07:03:40] drwxrwx--x. 2 boinc boinc        68 Mar  3 02:30 shared
[2026-03-03 07:03:40] -rw-r--r--. 2 boinc boinc    597955 Mar  3 02:30 input.tar.gz
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc         0 Mar  3 02:30 boinc_lockfile
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc      2561 Mar  3 02:31 pandaJob.out
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc       415 Mar  3 02:37 workernode_map.json
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc    997722 Mar  3 02:38 agis_schedconf.cvmfs.json
[2026-03-03 07:03:40] drwx------. 5 boinc boinc      4096 Mar  3 02:38 pilot3
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc 209174556 Mar  3 07:01 HITS.48838586._001174.pool.root.1
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc       531 Mar  3 07:01 boinc_task_state.xml
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc      1011 Mar  3 07:02 memory_monitor_summary.json
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc   1512931 Mar  3 07:02 agis_ddmendpoints.agis.ALL.json
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc    476010 Mar  3 07:02 log.48838586._001174.job.log.tgz.1
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc      6309 Mar  3 07:02 heartbeat.json
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc        95 Mar  3 07:03 pilot_heartbeat.json
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc      8192 Mar  3 07:03 boinc_mmap_file
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc        28 Mar  3 07:03 wrapper_checkpoint.txt
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc      5067 Mar  3 07:03 pilotlog.txt
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc   2231435 Mar  3 07:03 log.48838586._001174.job.log.1
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc       357 Mar  3 07:03 output.list
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc       620 Mar  3 07:03 runtime_log
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc   2723840 Mar  3 07:03 result.tar.gz
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc       655 Mar  3 07:03 zO2NDmACGH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmrHBLDmbnhpwm.diag
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc      8832 Mar  3 07:03 runtime_log.err
[2026-03-03 07:03:40] -rw-r--r--. 1 boinc boinc     20739 Mar  3 07:03 stderr.txt
[2026-03-03 07:03:40] HITS file was successfully produced:
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc 209174556 Mar  3 07:01 shared/HITS.pool.root.1
[2026-03-03 07:03:40]  *** Contents of shared directory: ***
[2026-03-03 07:03:40] total 478980
[2026-03-03 07:03:40] -rw-r--r--. 2 boinc boinc 277955740 Mar  3 02:30 ATLAS.root_0
[2026-03-03 07:03:40] -rw-r--r--. 2 boinc boinc     15845 Mar  3 02:30 start_atlas.sh
[2026-03-03 07:03:40] -rw-r--r--. 2 boinc boinc    597955 Mar  3 02:30 input.tar.gz
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc 209174556 Mar  3 07:01 HITS.pool.root.1
[2026-03-03 07:03:40] -rw-------. 1 boinc boinc   2723840 Mar  3 07:03 result.tar.gz
07:03:42 (21442): run_atlas exited; CPU time 59277.125692
07:03:42 (21442): called boinc_finish(0)

</stderr_txt>
]]>

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