Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:27:37 (454643): wrapper (7.7.26015): starting
15:27:37 (454643): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 15:27:37] Arguments: --nthreads 4
[2026-03-03 15:27:37] Threads: 4
[2026-03-03 15:27:37] Checking for CVMFS
[2026-03-03 15:27:37] No cvmfs_config command found, will try listing directly
[2026-03-03 15:27:37] CVMFS is ok
[2026-03-03 15:27:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 15:27:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 15:27:38] Further information can be found at the LHC@home message board.
[2026-03-03 15:27:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 15:27:38] Checking for apptainer binary...
[2026-03-03 15:27:38] which: no apptainer in ((null))
[2026-03-03 15:27:38] apptainer is not installed, using version from CVMFS
[2026-03-03 15:27:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 15:27:38] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-03 15:27:38] apptainer works
[2026-03-03 15:27:38] Set ATHENA_PROC_NUMBER=4
[2026-03-03 15:27:38] Set ATHENA_CORE_NUMBER=4
[2026-03-03 15:27:38] Starting ATLAS job with PandaID=7035851379
[2026-03-03 15:27:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:44:29 (562260): wrapper (7.7.26015): starting
15:44:29 (562260): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 15:44:29] Arguments: --nthreads 4
[2026-03-03 15:44:29] Threads: 4
[2026-03-03 15:44:29] This job has been restarted, cleaning up previous attempt
[2026-03-03 15:44:29] Checking for CVMFS
[2026-03-03 15:44:29] No cvmfs_config command found, will try listing directly
[2026-03-03 15:44:29] CVMFS is ok
[2026-03-03 15:44:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 15:44:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 15:44:29] Further information can be found at the LHC@home message board.
[2026-03-03 15:44:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 15:44:29] Checking for apptainer binary...
[2026-03-03 15:44:29] which: no apptainer in ((null))
[2026-03-03 15:44:29] apptainer is not installed, using version from CVMFS
[2026-03-03 15:44:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 15:44:29] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-03 15:44:29] apptainer works
[2026-03-03 15:44:29] Set ATHENA_PROC_NUMBER=4
[2026-03-03 15:44:29] Set ATHENA_CORE_NUMBER=4
[2026-03-03 15:44:29] Starting ATLAS job with PandaID=7035851379
[2026-03-03 15:44:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 17:59:03]  *** The last 200 lines of the pilot log: ***
[2026-03-03 17:59:03] 2026-03-03 16:57:59,551 | INFO     | job 7035851379 has finished - writing final server update
[2026-03-03 17:59:03] 2026-03-03 16:57:59,551 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_546598/.job.ad'
[2026-03-03 17:59:03] 2026-03-03 16:57:59,554 | INFO     | total number of processed events: 400 (read)
[2026-03-03 17:59:03] 2026-03-03 16:57:59,580 | INFO     | using path: /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7035851379/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 17:59:03] 2026-03-03 16:57:59,581 | INFO     | extracted standard info from prmon json
[2026-03-03 17:59:03] 2026-03-03 16:57:59,581 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 17:59:03] 2026-03-03 16:57:59,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 17:59:03] 2026-03-03 16:57:59,581 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 17:59:03] 2026-03-03 16:57:59,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 17:59:03] 2026-03-03 16:57:59,583 | INFO     | fitting pss+swap vs Time
[2026-03-03 17:59:03] 2026-03-03 16:57:59,583 | INFO     | sum of square deviations: 697054930.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,583 | INFO     | sum of deviations: 4483495608.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | mean x: 1772553098.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | mean y: 2269969.244274809
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | intersect: -11398888946.351938
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | chi2: 1.8886868672479062
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | sum of square deviations: 620244187.5
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | sum of deviations: 12292504212.5
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | mean x: 1772552945.5
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | mean y: 2284969.0714285714
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | intersect: -35127612236.838356
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | chi2: 1.05893673449127
[2026-03-03 17:59:03] 2026-03-03 16:57:59,584 | INFO     | current chi2=1.05893673449127 (change=43.93264691704581 %)
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | sum of square deviations: 549294020.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | sum of deviations: 11735950064.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | mean x: 1772552793.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | mean y: 2283772.214876033
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | intersect: -37869220935.685875
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | chi2: 1.0601233516612405
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | current chi2=1.0601233516612405 (change=-0.11205741866539967 %)
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | right removable region: 120
[2026-03-03 17:59:03] 2026-03-03 16:57:59,585 | INFO     | sum of square deviations: 620244187.5
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | sum of deviations: -6722270180.5
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | mean x: 1772553250.5
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | mean y: 2291638.992063492
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | intersect: 19213405744.248383
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | chi2: 0.8561450533617343
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | current chi2=0.8561450533617343 (change=54.66982546401336 %)
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | sum of square deviations: 549294020.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | sum of deviations: -6823063927.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | mean x: 1772553403.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | mean y: 2291851.495867769
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | intersect: 22020090593.762157
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | chi2: 0.8567038084757228
[2026-03-03 17:59:03] 2026-03-03 16:57:59,586 | INFO     | current chi2=0.8567038084757228 (change=-0.06526407082473963 %)
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | left removable region: 20
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | sum of square deviations: 310052325.0
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | sum of deviations: 436757102.4999999
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | mean x: 1772553372.5
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | mean y: 2309639.01
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | intersect: -2494608502.144732
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | chi2: 0.00010408035222920067
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | current memory leak: 1.41 B/s (using 100 data points, chi2=0.00)
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | could have reported an average CPU frequency of 3673 MHz (8 samples)
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | ..............................
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | . Timing measurements:
[2026-03-03 17:59:03] 2026-03-03 16:57:59,587 | INFO     | . get job = 0 s
[2026-03-03 17:59:03] 2026-03-03 16:57:59,588 | INFO     | . initial setup = 0 s
[2026-03-03 17:59:03] 2026-03-03 16:57:59,588 | INFO     | . payload setup = 20 s
[2026-03-03 17:59:03] 2026-03-03 16:57:59,588 | INFO     | . stage-in = 0 s
[2026-03-03 17:59:03] 2026-03-03 16:57:59,588 | INFO     | . payload execution = 7956 s
[2026-03-03 17:59:03] 2026-03-03 16:57:59,588 | INFO     | . stage-out = 0 s
[2026-03-03 17:59:03] 2026-03-03 16:57:59,588 | INFO     | . log creation = 0 s
[2026-03-03 17:59:03] 2026-03-03 16:57:59,588 | INFO     | ..............................
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | 
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | job summary report
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | --------------------------------------------------
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | PanDA job id: 7035851379
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | task id: 48844454
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | errors: (none)
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | pilot state: finished 
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | transexitcode: 0
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | exeerrorcode: 0
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | exeerrordiag: 
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | exitcode: 0
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | exitmsg: OK
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | cpuconsumptiontime: 28233 s
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | nevents: 400
[2026-03-03 17:59:03] 2026-03-03 16:58:00,018 | INFO     | neventsw: 0
[2026-03-03 17:59:03] 2026-03-03 16:58:00,019 | INFO     | pid: 1185624
[2026-03-03 17:59:03] 2026-03-03 16:58:00,019 | INFO     | pgrp: 1185624
[2026-03-03 17:59:03] 2026-03-03 16:58:00,019 | INFO     | corecount: 4
[2026-03-03 17:59:03] 2026-03-03 16:58:00,019 | INFO     | event service: False
[2026-03-03 17:59:03] 2026-03-03 16:58:00,019 | INFO     | sizes: {0: 2287193, 11: 2287193, 7980: 2315046, 7981: 2324068, 7984: 2324318}
[2026-03-03 17:59:03] 2026-03-03 16:58:00,019 | INFO     | --------------------------------------------------
[2026-03-03 17:59:03] 2026-03-03 16:58:00,019 | INFO     | 
[2026-03-03 17:59:03] 2026-03-03 16:58:00,019 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot116/slots/0
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | job 7035851379 has completed (purged errors)
[2026-03-03 17:59:03] 2026-03-03 16:58:00,041 | INFO     | overall cleanup function is called
[2026-03-03 17:59:03] 2026-03-03 16:58:01,047 | INFO     | --- collectZombieJob: --- 10, [1185624]
[2026-03-03 17:59:03] 2026-03-03 16:58:01,047 | INFO     | zombie collector waiting for pid 1185624
[2026-03-03 17:59:03] 2026-03-03 16:58:01,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 17:59:03] 2026-03-03 16:58:01,047 | INFO     | collected zombie processes
[2026-03-03 17:59:03] 2026-03-03 16:58:01,047 | INFO     | will attempt to kill all subprocesses of pid=1185624
[2026-03-03 17:59:03] 2026-03-03 16:58:01,709 | INFO     | process IDs to be killed: [1185624] (in reverse order)
[2026-03-03 17:59:03] 2026-03-03 16:58:01,963 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 17:59:03] 2026-03-03 16:58:01,964 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 17:59:03] 2026-03-03 16:58:01,995 | INFO     | did not find any defunct processes belonging to 1185624
[2026-03-03 17:59:03] 2026-03-03 16:58:02,020 | INFO     | did not find any defunct processes belonging to 1185624
[2026-03-03 17:59:03] 2026-03-03 16:58:02,021 | INFO     | ready for new job
[2026-03-03 17:59:03] 2026-03-03 16:58:02,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 17:59:03] 2026-03-03 16:58:02,022 | INFO     | **************************************
[2026-03-03 17:59:03] 2026-03-03 16:58:02,022 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 17:59:03] 2026-03-03 16:58:02,022 | INFO     | **************************************
[2026-03-03 17:59:03] 2026-03-03 16:58:02,022 | INFO     | 
[2026-03-03 17:59:03] 2026-03-03 16:58:02,028 | INFO     | architecture information:
[2026-03-03 17:59:03] 2026-03-03 16:58:02,028 | INFO     | executing command: cat /etc/os-release
[2026-03-03 17:59:03] 2026-03-03 16:58:02,051 | INFO     | cat /etc/os-release:
[2026-03-03 17:59:03] NAME="CentOS Linux"
[2026-03-03 17:59:03] VERSION="7 (Core)"
[2026-03-03 17:59:03] ID="centos"
[2026-03-03 17:59:03] ID_LIKE="rhel fedora"
[2026-03-03 17:59:03] VERSION_ID="7"
[2026-03-03 17:59:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 17:59:03] ANSI_COLOR="0;31"
[2026-03-03 17:59:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 17:59:03] HOME_URL="https://www.centos.org/"
[2026-03-03 17:59:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 17:59:03] 
[2026-03-03 17:59:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 17:59:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 17:59:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 17:59:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 17:59:03] 
[2026-03-03 17:59:03] 2026-03-03 16:58:02,051 | INFO     | **************************************
[2026-03-03 17:59:03] 2026-03-03 16:58:02,554 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/0
[2026-03-03 17:59:03] 2026-03-03 16:58:02,571 | INFO     | sufficient remaining disk space (24347934720 B)
[2026-03-03 17:59:03] 2026-03-03 16:58:02,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 17:59:03] 2026-03-03 16:58:02,571 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 17:59:03] 2026-03-03 16:58:02,571 | INFO     | update_server=False
[2026-03-03 17:59:03] 2026-03-03 16:58:02,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 17:59:03] 2026-03-03 16:58:02,793 | INFO     | all payload control threads have been joined
[2026-03-03 17:59:03] 2026-03-03 16:58:02,973 | INFO     | all job control threads have been joined
[2026-03-03 17:59:03] 2026-03-03 16:58:03,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 17:59:03] 2026-03-03 16:58:03,263 | INFO     | aborting loop
[2026-03-03 17:59:03] 2026-03-03 16:58:03,396 | INFO     | all data control threads have been joined
[2026-03-03 17:59:03] 2026-03-03 16:58:03,576 | INFO     | [job] retrieve thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:03,798 | INFO     | [payload] control thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:03,893 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:03,911 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:03,952 | INFO     | [payload] failed_post thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:03,978 | INFO     | [job] control thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:03,999 | INFO     | [data] copytool_in thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:04,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 17:59:03] 2026-03-03 16:58:04,268 | INFO     | [job] job monitor thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:04,401 | INFO     | [data] control thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:04,474 | INFO     | [payload] validate_post thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:04,662 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 17:59:03] 2026-03-03 16:58:04,759 | INFO     | [job] validate thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:05,031 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:05,554 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 17:59:03] 2026-03-03 16:58:05,667 | INFO     | [job] queue monitor thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:06,062 | INFO     | [data] copytool_out thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:09,559 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:13,412 | INFO     | job.realtimelogging is not enabled
[2026-03-03 17:59:03] 2026-03-03 16:58:14,417 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 17:59:03] 2026-03-03 16:58:32,180 | INFO     | PID=858746 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-03 17:59:03] 2026-03-03 16:58:32,180 | INFO     | .. there are 58 such processes running
[2026-03-03 17:59:03] 2026-03-03 16:58:32,180 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 17:59:03] 2026-03-03 16:58:32,180 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 17:59:03] 2026-03-03 16:58:32,180 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 17:59:03] 2026-03-03 16:58:57,082 | INFO     | [monitor] cgroup control has ended
[2026-03-03 17:59:03] 2026-03-03 16:58:57,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23431338899264)>', '<ExcThread(monitor, started 23431101028096)>']
[2026-03-03 17:59:03] 2026-03-03 16:58:58,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 17:59:03] 2026-03-03 16:58:58,310 | INFO     | [monitor] control thread has ended
[2026-03-03 17:59:03] 2026-03-03 16:59:02,798 | INFO     | all workflow threads have been joined
[2026-03-03 17:59:03] 2026-03-03 16:59:02,798 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 17:59:03] 2026-03-03 16:59:02,798 | INFO     | traces error code: 0
[2026-03-03 17:59:03] 2026-03-03 16:59:02,798 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 17:59:03] 2026-03-03 16:59:02,909 [wrapper] ==== pilot stdout END ====
[2026-03-03 17:59:03] 2026-03-03 16:59:02,911 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 17:59:03] 2026-03-03 16:59:02,915 [wrapper] pilotpid: 858746
[2026-03-03 17:59:03] 2026-03-03 16:59:02,917 [wrapper] Pilot exit status: 0
[2026-03-03 17:59:03] 2026-03-03 16:59:02,962 [wrapper] pandaids: 7035851379 7035851379
[2026-03-03 17:59:03] 2026-03-03 16:59:03,080 [wrapper] cleanup supervisor_pilot 2218199 858748
[2026-03-03 17:59:03] 2026-03-03 16:59:03,083 [wrapper] Test setup, not cleaning
[2026-03-03 17:59:03] 2026-03-03 16:59:03,085 [wrapper] apfmon messages muted
[2026-03-03 17:59:03] 2026-03-03 16:59:03,087 [wrapper] ==== wrapper stdout END ====
[2026-03-03 17:59:03] 2026-03-03 16:59:03,118 [wrapper] ==== wrapper stderr END ====
[2026-03-03 17:59:03]  *** Error codes and diagnostics ***
[2026-03-03 17:59:03]     "exeErrorCode": 0,
[2026-03-03 17:59:03]     "exeErrorDiag": "",
[2026-03-03 17:59:03]     "pilotErrorCode": 0,
[2026-03-03 17:59:03]     "pilotErrorDiag": "",
[2026-03-03 17:59:03]  *** Listing of results directory ***
[2026-03-03 17:59:03] total 528448
[2026-03-03 17:59:03] drwx------. 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc    584627 Mar  2 07:15 pilot3.tar.gz
[2026-03-03 17:59:03] -rwx------. 1 boinc boinc     36322 Mar  2 07:18 runpilot2-wrapper.sh
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc      5111 Mar  2 07:20 queuedata.json
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc       100 Mar  3 15:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 17:59:03] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 15:27 run_atlas
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc       105 Mar  3 15:27 job.xml
[2026-03-03 17:59:03] -rw-r--r--. 3 boinc boinc 197797611 Mar  3 15:27 EVNT.48453336._000002.pool.root.1
[2026-03-03 17:59:03] -rw-r--r--. 3 boinc boinc 197797611 Mar  3 15:27 ATLAS.root_0
[2026-03-03 17:59:03] -rw-r--r--. 2 boinc boinc     15845 Mar  3 15:27 start_atlas.sh
[2026-03-03 17:59:03] drwxrwx--x. 2 boinc boinc      4096 Mar  3 15:27 shared
[2026-03-03 17:59:03] -rw-r--r--. 2 boinc boinc    597990 Mar  3 15:27 input.tar.gz
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc         0 Mar  3 15:27 boinc_lockfile
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc   1516104 Mar  3 15:27 agis_ddmendpoints.agis.ALL.json
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc      2650 Mar  3 15:44 pandaJob.out
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc    998442 Mar  3 15:44 agis_schedconf.cvmfs.json
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc       445 Mar  3 15:44 workernode_map.json
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc      6715 Mar  3 16:28 init_data.xml
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc 138719960 Mar  3 17:57 HITS.48844454._000034.pool.root.1
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc       529 Mar  3 17:57 boinc_task_state.xml
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc      1027 Mar  3 17:57 memory_monitor_summary.json
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc    309245 Mar  3 17:57 log.48844454._000034.job.log.tgz.1
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc        96 Mar  3 17:57 pilot_heartbeat.json
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc      6339 Mar  3 17:57 heartbeat.json
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc        27 Mar  3 17:58 wrapper_checkpoint.txt
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc      8192 Mar  3 17:58 boinc_mmap_file
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc      4901 Mar  3 17:59 pilotlog.txt
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc   1128339 Mar  3 17:59 log.48844454._000034.job.log.1
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc       357 Mar  3 17:59 output.list
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc       620 Mar  3 17:59 runtime_log
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc   1454080 Mar  3 17:59 result.tar.gz
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc      9298 Mar  3 17:59 runtime_log.err
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc       787 Mar  3 17:59 7t7KDmGnBH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHpCLDmtflzom.diag
[2026-03-03 17:59:03] -rw-r--r--. 1 boinc boinc     22753 Mar  3 17:59 stderr.txt
[2026-03-03 17:59:03] HITS file was successfully produced:
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc 138719960 Mar  3 17:57 shared/HITS.pool.root.1
[2026-03-03 17:59:03]  *** Contents of shared directory: ***
[2026-03-03 17:59:03] total 330664
[2026-03-03 17:59:03] -rw-r--r--. 3 boinc boinc 197797611 Mar  3 15:27 ATLAS.root_0
[2026-03-03 17:59:03] -rw-r--r--. 2 boinc boinc     15845 Mar  3 15:27 start_atlas.sh
[2026-03-03 17:59:03] -rw-r--r--. 2 boinc boinc    597990 Mar  3 15:27 input.tar.gz
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc 138719960 Mar  3 17:57 HITS.pool.root.1
[2026-03-03 17:59:03] -rw-------. 1 boinc boinc   1454080 Mar  3 17:59 result.tar.gz
17:59:04 (562260): run_atlas exited; CPU time 28535.767250
17:59:04 (562260): called boinc_finish(0)

</stderr_txt>
]]>

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