Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:29:26 (4049127): wrapper (7.7.26015): starting
00:29:26 (4049127): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 00:29:26] Arguments: --nthreads 4
[2026-03-03 00:29:26] Threads: 4
[2026-03-03 00:29:26] Checking for CVMFS
[2026-03-03 00:29:26] No cvmfs_config command found, will try listing directly
[2026-03-03 00:29:26] CVMFS is ok
[2026-03-03 00:29:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 00:29:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 00:29:26] Further information can be found at the LHC@home message board.
[2026-03-03 00:29:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 00:29:26] Checking for apptainer binary...
[2026-03-03 00:29:26] which: no apptainer in ((null))
[2026-03-03 00:29:26] apptainer is not installed, using version from CVMFS
[2026-03-03 00:29:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 00:29:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2026-03-03 00:29:27] apptainer works
[2026-03-03 00:29:27] Set ATHENA_PROC_NUMBER=4
[2026-03-03 00:29:27] Set ATHENA_CORE_NUMBER=4
[2026-03-03 00:29:27] Starting ATLAS job with PandaID=7035851358
[2026-03-03 00:29:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 05:14:20]  *** The last 200 lines of the pilot log: ***
[2026-03-03 05:14:20] 2026-03-03 04:13:28,553 | INFO     | job 7035851358 has finished - writing final server update
[2026-03-03 05:14:20] 2026-03-03 04:13:28,554 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1638386/.job.ad'
[2026-03-03 05:14:20] 2026-03-03 04:13:28,554 | INFO     | total number of processed events: 400 (read)
[2026-03-03 05:14:20] 2026-03-03 04:13:28,567 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-7035851358/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 05:14:20] 2026-03-03 04:13:28,568 | INFO     | extracted standard info from prmon json
[2026-03-03 05:14:20] 2026-03-03 04:13:28,568 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 05:14:20] 2026-03-03 04:13:28,568 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 05:14:20] 2026-03-03 04:13:28,568 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 05:14:20] 2026-03-03 04:13:28,569 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 05:14:20] 2026-03-03 04:13:28,574 | INFO     | fitting pss+swap vs Time
[2026-03-03 05:14:20] 2026-03-03 04:13:28,575 | INFO     | sum of square deviations: 6734191380.0
[2026-03-03 05:14:20] 2026-03-03 04:13:28,577 | INFO     | sum of deviations: -24745241517.0
[2026-03-03 05:14:20] 2026-03-03 04:13:28,577 | INFO     | mean x: 1772502688.0
[2026-03-03 05:14:20] 2026-03-03 04:13:28,577 | INFO     | mean y: 2332569.283154122
[2026-03-03 05:14:20] 2026-03-03 04:13:28,577 | INFO     | intersect: 6515513533.274661
[2026-03-03 05:14:20] 2026-03-03 04:13:28,578 | INFO     | chi2: 1.437867925332048
[2026-03-03 05:14:20] 2026-03-03 04:13:28,578 | INFO     | sum of square deviations: 6378584712.5
[2026-03-03 05:14:20] 2026-03-03 04:13:28,580 | INFO     | sum of deviations: -24455626144.0
[2026-03-03 05:14:20] 2026-03-03 04:13:28,580 | INFO     | mean x: 1772502535.5
[2026-03-03 05:14:20] 2026-03-03 04:13:28,580 | INFO     | mean y: 2332693.700729927
[2026-03-03 05:14:20] 2026-03-03 04:13:28,581 | INFO     | intersect: 6798144194.413803
[2026-03-03 05:14:20] 2026-03-03 04:13:28,581 | INFO     | chi2: 1.4362703306529212
[2026-03-03 05:14:20] 2026-03-03 04:13:28,581 | INFO     | current chi2=1.4362703306529212 (change=0.11110858313067715 %)
[2026-03-03 05:14:20] 2026-03-03 04:13:28,581 | INFO     | right removable region: 273
[2026-03-03 05:14:20] 2026-03-03 04:13:28,582 | INFO     | sum of square deviations: 6378584712.5
[2026-03-03 05:14:20] 2026-03-03 04:13:28,584 | INFO     | sum of deviations: -52261585513.49999
[2026-03-03 05:14:20] 2026-03-03 04:13:28,584 | INFO     | mean x: 1772502840.5
[2026-03-03 05:14:20] 2026-03-03 04:13:28,584 | INFO     | mean y: 2344213.689781022
[2026-03-03 05:14:20] 2026-03-03 04:13:28,584 | INFO     | intersect: 14524971559.248043
[2026-03-03 05:14:20] 2026-03-03 04:13:28,585 | INFO     | chi2: 0.23470173408630263
[2026-03-03 05:14:20] 2026-03-03 04:13:28,585 | INFO     | current chi2=0.23470173408630263 (change=83.67710066054205 %)
[2026-03-03 05:14:20] 2026-03-03 04:13:28,585 | INFO     | sum of square deviations: 6035722470.0
[2026-03-03 05:14:20] 2026-03-03 04:13:28,587 | INFO     | sum of deviations: -41616087218.00001
[2026-03-03 05:14:20] 2026-03-03 04:13:28,588 | INFO     | mean x: 1772502993.0
[2026-03-03 05:14:20] 2026-03-03 04:13:28,588 | INFO     | mean y: 2339467.475836431
[2026-03-03 05:14:20] 2026-03-03 04:13:28,588 | INFO     | intersect: 12223683228.308838
[2026-03-03 05:14:20] 2026-03-03 04:13:28,588 | INFO     | chi2: 0.19956789230179808
[2026-03-03 05:14:20] 2026-03-03 04:13:28,588 | INFO     | current chi2=0.19956789230179808 (change=14.969570600439368 %)
[2026-03-03 05:14:20] 2026-03-03 04:13:28,588 | INFO     | left removable region: 20
[2026-03-03 05:14:20] 2026-03-03 04:13:28,589 | INFO     | sum of square deviations: 5021496942.0
[2026-03-03 05:14:20] 2026-03-03 04:13:28,591 | INFO     | sum of deviations: -16495505625.00001
[2026-03-03 05:14:20] 2026-03-03 04:13:28,591 | INFO     | mean x: 1772503115.0
[2026-03-03 05:14:20] 2026-03-03 04:13:28,591 | INFO     | mean y: 2327797.581027668
[2026-03-03 05:14:20] 2026-03-03 04:13:28,591 | INFO     | intersect: 5824961056.452888
[2026-03-03 05:14:20] 2026-03-03 04:13:28,592 | INFO     | chi2: 0.06109237746059973
[2026-03-03 05:14:20] 2026-03-03 04:13:28,592 | INFO     | current memory leak: -3.28 B/s (using 253 data points, chi2=0.06)
[2026-03-03 05:14:20] 2026-03-03 04:13:28,593 | INFO     | could have reported an average CPU frequency of 2523 MHz (13 samples)
[2026-03-03 05:14:20] 2026-03-03 04:13:28,593 | INFO     | ..............................
[2026-03-03 05:14:20] 2026-03-03 04:13:28,593 | INFO     | . Timing measurements:
[2026-03-03 05:14:20] 2026-03-03 04:13:28,593 | INFO     | . get job = 0 s
[2026-03-03 05:14:20] 2026-03-03 04:13:28,593 | INFO     | . initial setup = 6 s
[2026-03-03 05:14:20] 2026-03-03 04:13:28,594 | INFO     | . payload setup = 6 s
[2026-03-03 05:14:20] 2026-03-03 04:13:28,594 | INFO     | . stage-in = 0 s
[2026-03-03 05:14:20] 2026-03-03 04:13:28,594 | INFO     | . payload execution = 16997 s
[2026-03-03 05:14:20] 2026-03-03 04:13:28,594 | INFO     | . stage-out = 1 s
[2026-03-03 05:14:20] 2026-03-03 04:13:28,594 | INFO     | . log creation = 0 s
[2026-03-03 05:14:20] 2026-03-03 04:13:28,594 | INFO     | ..............................
[2026-03-03 05:14:20] 2026-03-03 04:13:29,189 | INFO     | 
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | job summary report
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | --------------------------------------------------
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | PanDA job id: 7035851358
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | task id: 48844454
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | errors: (none)
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | pilot state: finished 
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | transexitcode: 0
[2026-03-03 05:14:20] 2026-03-03 04:13:29,190 | INFO     | exeerrorcode: 0
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | exeerrordiag: 
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | exitcode: 0
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | exitmsg: OK
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | cpuconsumptiontime: 64751 s
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | nevents: 400
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | neventsw: 0
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | pid: 4058186
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | pgrp: 4058186
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | corecount: 4
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | event service: False
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | sizes: {0: 2282185, 1: 2282391, 11: 2282419, 17008: 2314376, 17010: 2323396, 17011: 2323774}
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | --------------------------------------------------
[2026-03-03 05:14:20] 2026-03-03 04:13:29,191 | INFO     | 
[2026-03-03 05:14:20] 2026-03-03 04:13:29,192 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2026-03-03 05:14:20] 2026-03-03 04:13:29,217 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 05:14:20] 2026-03-03 04:13:29,219 | INFO     | job 7035851358 has completed (purged errors)
[2026-03-03 05:14:20] 2026-03-03 04:13:29,220 | INFO     | overall cleanup function is called
[2026-03-03 05:14:20] 2026-03-03 04:13:29,784 | INFO     | PID=4053195 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-03 05:14:20] 2026-03-03 04:13:29,785 | INFO     | .. there are 12 such processes running
[2026-03-03 05:14:20] 2026-03-03 04:13:30,227 | INFO     | --- collectZombieJob: --- 10, [4058186]
[2026-03-03 05:14:20] 2026-03-03 04:13:30,228 | INFO     | zombie collector waiting for pid 4058186
[2026-03-03 05:14:20] 2026-03-03 04:13:30,228 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 05:14:20] 2026-03-03 04:13:30,228 | INFO     | collected zombie processes
[2026-03-03 05:14:20] 2026-03-03 04:13:30,228 | INFO     | will attempt to kill all subprocesses of pid=4058186
[2026-03-03 05:14:20] 2026-03-03 04:13:30,602 | INFO     | process IDs to be killed: [4058186] (in reverse order)
[2026-03-03 05:14:20] 2026-03-03 04:13:30,731 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 05:14:20] 2026-03-03 04:13:30,731 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 05:14:20] 2026-03-03 04:13:30,743 | INFO     | did not find any defunct processes belonging to 4058186
[2026-03-03 05:14:20] 2026-03-03 04:13:30,755 | INFO     | did not find any defunct processes belonging to 4058186
[2026-03-03 05:14:20] 2026-03-03 04:13:30,755 | INFO     | ready for new job
[2026-03-03 05:14:20] 2026-03-03 04:13:30,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 05:14:20] 2026-03-03 04:13:30,759 | INFO     | **************************************
[2026-03-03 05:14:20] 2026-03-03 04:13:30,760 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 05:14:20] 2026-03-03 04:13:30,760 | INFO     | **************************************
[2026-03-03 05:14:20] 2026-03-03 04:13:30,760 | INFO     | 
[2026-03-03 05:14:20] 2026-03-03 04:13:30,764 | INFO     | architecture information:
[2026-03-03 05:14:20] 2026-03-03 04:13:30,765 | INFO     | executing command: cat /etc/os-release
[2026-03-03 05:14:20] 2026-03-03 04:13:30,783 | INFO     | cat /etc/os-release:
[2026-03-03 05:14:20] NAME="CentOS Linux"
[2026-03-03 05:14:20] VERSION="7 (Core)"
[2026-03-03 05:14:20] ID="centos"
[2026-03-03 05:14:20] ID_LIKE="rhel fedora"
[2026-03-03 05:14:20] VERSION_ID="7"
[2026-03-03 05:14:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 05:14:20] ANSI_COLOR="0;31"
[2026-03-03 05:14:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 05:14:20] HOME_URL="https://www.centos.org/"
[2026-03-03 05:14:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 05:14:20] 
[2026-03-03 05:14:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 05:14:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 05:14:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 05:14:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 05:14:20] 
[2026-03-03 05:14:20] 2026-03-03 04:13:30,784 | INFO     | **************************************
[2026-03-03 05:14:20] 2026-03-03 04:13:31,287 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2026-03-03 05:14:20] 2026-03-03 04:13:31,308 | INFO     | sufficient remaining disk space (677660065792 B)
[2026-03-03 05:14:20] 2026-03-03 04:13:31,308 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 05:14:20] 2026-03-03 04:13:31,308 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 05:14:20] 2026-03-03 04:13:31,309 | INFO     | update_server=False
[2026-03-03 05:14:20] 2026-03-03 04:13:31,309 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 05:14:20] 2026-03-03 04:13:31,414 | INFO     | all job control threads have been joined
[2026-03-03 05:14:20] 2026-03-03 04:13:31,414 | INFO     | all payload control threads have been joined
[2026-03-03 05:14:20] 2026-03-03 04:13:31,559 | WARNING  | process 4058186 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 05:14:20] 2026-03-03 04:13:31,682 | INFO     | all data control threads have been joined
[2026-03-03 05:14:20] 2026-03-03 04:13:31,832 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 05:14:20] 2026-03-03 04:13:32,203 | INFO     | number of running child processes to parent process 4058186: 1
[2026-03-03 05:14:20] 2026-03-03 04:13:32,203 | INFO     | maximum number of monitored processes: 6
[2026-03-03 05:14:20] 2026-03-03 04:13:32,203 | INFO     | aborting job monitoring since job object (job id=7035851358) has expired
[2026-03-03 05:14:20] 2026-03-03 04:13:32,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 05:14:20] 2026-03-03 04:13:32,204 | INFO     | will abort loop
[2026-03-03 05:14:20] 2026-03-03 04:13:32,314 | INFO     | [job] retrieve thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:32,385 | INFO     | [payload] validate_post thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:32,416 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:32,419 | INFO     | [job] control thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:32,420 | INFO     | [payload] control thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:32,512 | INFO     | [data] copytool_in thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:32,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 05:14:20] 2026-03-03 04:13:32,687 | INFO     | [data] control thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:33,059 | INFO     | [payload] failed_post thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:33,121 | INFO     | [job] validate thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:33,208 | INFO     | [job] job monitor thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:33,376 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:33,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 05:14:20] 2026-03-03 04:13:33,758 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:34,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 05:14:20] 2026-03-03 04:13:34,624 | INFO     | [data] copytool_out thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:34,706 | INFO     | [job] queue monitor thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:38,557 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:13:41,635 | INFO     | job.realtimelogging is not enabled
[2026-03-03 05:14:20] 2026-03-03 04:13:42,640 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 05:14:20] 2026-03-03 04:14:02,305 | INFO     | PID=4053195 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 05:14:20] 2026-03-03 04:14:02,306 | INFO     | .. there are 12 such processes running
[2026-03-03 05:14:20] 2026-03-03 04:14:02,306 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 05:14:20] 2026-03-03 04:14:02,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 05:14:20] 2026-03-03 04:14:02,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 05:14:20] 2026-03-03 04:14:13,730 | INFO     | [monitor] cgroup control has ended
[2026-03-03 05:14:20] 2026-03-03 04:14:15,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23097036031808)>', '<ExcThread(monitor, started 23096719300352)>']
[2026-03-03 05:14:20] 2026-03-03 04:14:16,375 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 05:14:20] 2026-03-03 04:14:16,376 | INFO     | [monitor] control thread has ended
[2026-03-03 05:14:20] 2026-03-03 04:14:20,527 | INFO     | all workflow threads have been joined
[2026-03-03 05:14:20] 2026-03-03 04:14:20,528 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 05:14:20] 2026-03-03 04:14:20,528 | INFO     | traces error code: 0
[2026-03-03 05:14:20] 2026-03-03 04:14:20,528 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 05:14:20] 2026-03-03 04:14:20,695 [wrapper] ==== pilot stdout END ====
[2026-03-03 05:14:20] 2026-03-03 04:14:20,698 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 05:14:20] 2026-03-03 04:14:20,701 [wrapper] pilotpid: 4053195
[2026-03-03 05:14:20] 2026-03-03 04:14:20,703 [wrapper] Pilot exit status: 0
[2026-03-03 05:14:20] 2026-03-03 04:14:20,714 [wrapper] pandaids: 7035851358
[2026-03-03 05:14:20] 2026-03-03 04:14:20,790 [wrapper] cleanup supervisor_pilot  164373 4053196
[2026-03-03 05:14:20] 2026-03-03 04:14:20,793 [wrapper] Test setup, not cleaning
[2026-03-03 05:14:20] 2026-03-03 04:14:20,796 [wrapper] apfmon messages muted
[2026-03-03 05:14:20] 2026-03-03 04:14:20,799 [wrapper] ==== wrapper stdout END ====
[2026-03-03 05:14:20] 2026-03-03 04:14:20,801 [wrapper] ==== wrapper stderr END ====
[2026-03-03 05:14:20]  *** Error codes and diagnostics ***
[2026-03-03 05:14:20]     "exeErrorCode": 0,
[2026-03-03 05:14:20]     "exeErrorDiag": "",
[2026-03-03 05:14:20]     "pilotErrorCode": 0,
[2026-03-03 05:14:20]     "pilotErrorDiag": "",
[2026-03-03 05:14:20]  *** Listing of results directory ***
[2026-03-03 05:14:20] total 346416
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc    584627 Mar  2 07:15 pilot3.tar.gz
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc      5111 Mar  2 07:15 queuedata.json
[2026-03-03 05:14:20] -rwx------ 1 boinc boinc     36322 Mar  2 07:15 runpilot2-wrapper.sh
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc       100 Mar  3 00:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 05:14:20] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 00:29 run_atlas
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc       105 Mar  3 00:29 job.xml
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc      6640 Mar  3 00:29 init_data.xml
[2026-03-03 05:14:20] -rw-r--r-- 2 boinc boinc 200099818 Mar  3 00:29 EVNT.48453336._000001.pool.root.1
[2026-03-03 05:14:20] drwxrwx--x 2 boinc boinc      4096 Mar  3 00:29 shared
[2026-03-03 05:14:20] -rw-r--r-- 2 boinc boinc    597977 Mar  3 00:29 input.tar.gz
[2026-03-03 05:14:20] -rw-r--r-- 2 boinc boinc     15845 Mar  3 00:29 start_atlas.sh
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc         0 Mar  3 00:29 boinc_lockfile
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc      2649 Mar  3 00:29 pandaJob.out
[2026-03-03 05:14:20] -rw------- 1 boinc boinc    997722 Mar  3 00:29 agis_schedconf.cvmfs.json
[2026-03-03 05:14:20] -rw------- 1 boinc boinc       448 Mar  3 00:29 workernode_map.json
[2026-03-03 05:14:20] drwx------ 5 boinc boinc      4096 Mar  3 00:29 pilot3
[2026-03-03 05:14:20] -rw------- 1 boinc boinc 145051972 Mar  3 05:12 HITS.48844454._000013.pool.root.1
[2026-03-03 05:14:20] -rw------- 1 boinc boinc        95 Mar  3 05:13 pilot_heartbeat.json
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc       530 Mar  3 05:13 boinc_task_state.xml
[2026-03-03 05:14:20] -rw------- 1 boinc boinc      1033 Mar  3 05:13 memory_monitor_summary.json
[2026-03-03 05:14:20] -rw------- 1 boinc boinc   1512931 Mar  3 05:13 agis_ddmendpoints.agis.ALL.json
[2026-03-03 05:14:20] -rw------- 1 boinc boinc    443420 Mar  3 05:13 log.48844454._000013.job.log.tgz.1
[2026-03-03 05:14:20] -rw------- 1 boinc boinc      6386 Mar  3 05:13 heartbeat.json
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc      8192 Mar  3 05:13 boinc_mmap_file
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc        28 Mar  3 05:13 wrapper_checkpoint.txt
[2026-03-03 05:14:20] -rw------- 1 boinc boinc      5434 Mar  3 05:14 pilotlog.txt
[2026-03-03 05:14:20] -rw------- 1 boinc boinc   2380062 Mar  3 05:14 log.48844454._000013.job.log.1
[2026-03-03 05:14:20] -rw------- 1 boinc boinc       357 Mar  3 05:14 output.list
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc       620 Mar  3 05:14 runtime_log
[2026-03-03 05:14:20] -rw------- 1 boinc boinc   2836480 Mar  3 05:14 result.tar.gz
[2026-03-03 05:14:20] -rw------- 1 boinc boinc       665 Mar  3 05:14 CsjMDmNkBH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmyjCLDmDrKTOo.diag
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc      9205 Mar  3 05:14 runtime_log.err
[2026-03-03 05:14:20] -rw-r--r-- 1 boinc boinc     21191 Mar  3 05:14 stderr.txt
[2026-03-03 05:14:20] HITS file was successfully produced:
[2026-03-03 05:14:20] -rw------- 1 boinc boinc 145051972 Mar  3 05:12 shared/HITS.pool.root.1
[2026-03-03 05:14:20]  *** Contents of shared directory: ***
[2026-03-03 05:14:20] total 340448
[2026-03-03 05:14:20] -rw-r--r-- 2 boinc boinc 200099818 Mar  3 00:29 ATLAS.root_0
[2026-03-03 05:14:20] -rw-r--r-- 2 boinc boinc    597977 Mar  3 00:29 input.tar.gz
[2026-03-03 05:14:20] -rw-r--r-- 2 boinc boinc     15845 Mar  3 00:29 start_atlas.sh
[2026-03-03 05:14:20] -rw------- 1 boinc boinc 145051972 Mar  3 05:12 HITS.pool.root.1
[2026-03-03 05:14:20] -rw------- 1 boinc boinc   2836480 Mar  3 05:14 result.tar.gz
05:14:22 (4049127): run_atlas exited; CPU time 65465.688227
05:14:22 (4049127): called boinc_finish(0)

</stderr_txt>
]]>

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