Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:45:03 (346514): wrapper (7.7.26015): starting
07:45:03 (346514): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 07:45:03] Arguments: --nthreads 4
[2026-03-03 07:45:03] Threads: 4
[2026-03-03 07:45:03] Checking for CVMFS
[2026-03-03 07:45:03] No cvmfs_config command found, will try listing directly
[2026-03-03 07:45:03] CVMFS is ok
[2026-03-03 07:45:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 07:45:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 07:45:03] Further information can be found at the LHC@home message board.
[2026-03-03 07:45:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 07:45:03] Checking for apptainer binary...
[2026-03-03 07:45:03] which: no apptainer in ((null))
[2026-03-03 07:45:03] apptainer is not installed, using version from CVMFS
[2026-03-03 07:45:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 07:45:03] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-03 07:45:03] apptainer works
[2026-03-03 07:45:03] Set ATHENA_PROC_NUMBER=4
[2026-03-03 07:45:03] Set ATHENA_CORE_NUMBER=4
[2026-03-03 07:45:03] Starting ATLAS job with PandaID=7035904736
[2026-03-03 07:45:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 09:11:50]  *** The last 200 lines of the pilot log: ***
[2026-03-03 09:11:50]  protocol_id=None
[2026-03-03 09:11:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 09:11:50]  replicas=None
[2026-03-03 09:11:50]  scope=mc23_13p6TeV
[2026-03-03 09:11:50]  status=None
[2026-03-03 09:11:50]  status_code=0
[2026-03-03 09:11:50]  storage_token=
[2026-03-03 09:11:50]  surl=/var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7035904736/log.48838605._002148.job.log.tgz.1
[2026-03-03 09:11:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/a3/log.48838605._002148.job.log.tgz.1
[2026-03-03 09:11:50]  workdir=None
[2026-03-03 09:11:50] ]
[2026-03-03 09:11:50] 2026-03-03 08:11:12,891 | INFO     | transferring file log.48838605._002148.job.log.tgz.1 from /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7035904736/log.48838605._002148.job.log.tgz.1 to /var/lib/
[2026-03-03 09:11:50] 2026-03-03 08:11:12,891 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7035904736/log.48838605._002148.job.log.tgz.1 /var/lib/boinc/var/slot116/slots/0/
[2026-03-03 09:11:50] 2026-03-03 08:11:12,905 | INFO     | adding to output.list: log.48838605._002148.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/a3/log.48838605._002148.job.log.tg
[2026-03-03 09:11:50] 2026-03-03 08:11:12,906 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 09:11:50] 2026-03-03 08:11:12,906 | INFO     | summary of transferred files:
[2026-03-03 09:11:50] 2026-03-03 08:11:12,906 | INFO     |  -- lfn=log.48838605._002148.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 09:11:50] 2026-03-03 08:11:12,906 | INFO     | stage-out finished correctly
[2026-03-03 09:11:50] 2026-03-03 08:11:13,459 | INFO     | PID=351048 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 09:11:50] 2026-03-03 08:11:13,460 | INFO     | .. there are 47 such processes running
[2026-03-03 09:11:50] 2026-03-03 08:11:13,876 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 09:11:50] 2026-03-03 08:11:14,460 | INFO     | time since job start (5159s) is within the limit (349056.0s)
[2026-03-03 09:11:50] 2026-03-03 08:11:16,464 | INFO     | time since job start (5161s) is within the limit (349056.0s)
[2026-03-03 09:11:50] 2026-03-03 08:11:16,647 | INFO     | job 7035904736 has state=finished
[2026-03-03 09:11:50] 2026-03-03 08:11:16,647 | INFO     | preparing for final server update for job 7035904736 in state='finished'
[2026-03-03 09:11:50] 2026-03-03 08:11:17,210 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,211 | INFO     | reading metadata from: /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7035904736/jobReport.json
[2026-03-03 09:11:50] 2026-03-03 08:11:17,212 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot116/slots/0/workernode_map.json
[2026-03-03 09:11:50] 2026-03-03 08:11:17,212 | INFO     | this job has now completed (state=finished)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,213 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,213 | INFO     | log transfer has been attempted: DONE
[2026-03-03 09:11:50] 2026-03-03 08:11:17,213 | INFO     | job 7035904736 has finished - writing final server update
[2026-03-03 09:11:50] 2026-03-03 08:11:17,213 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_16236/.job.ad'
[2026-03-03 09:11:50] 2026-03-03 08:11:17,213 | INFO     | total number of processed events: 400 (read)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,230 | INFO     | using path: /var/lib/boinc/var/slot116/slots/0/PanDA_Pilot-7035904736/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,230 | INFO     | extracted standard info from prmon json
[2026-03-03 09:11:50] 2026-03-03 08:11:17,230 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 09:11:50] 2026-03-03 08:11:17,230 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 09:11:50] 2026-03-03 08:11:17,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 09:11:50] 2026-03-03 08:11:17,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 09:11:50] 2026-03-03 08:11:17,231 | INFO     | fitting pss+swap vs Time
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | sum of square deviations: 147126479.5
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | sum of deviations: 521778658.5000001
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | mean x: 1772522988.5
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | mean y: 2355998.653846154
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | intersect: -6283831710.336643
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | chi2: 0.0004747871388522631
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | current memory leak: 3.55 B/s (using 78 data points, chi2=0.00)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | could have reported an average CPU frequency of 3619 MHz (6 samples)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | ..............................
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | . Timing measurements:
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | . get job = 0 s
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | . initial setup = 4 s
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | . payload setup = 4 s
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | . stage-in = 0 s
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | . payload execution = 5138 s
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | . stage-out = 0 s
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | . log creation = 0 s
[2026-03-03 09:11:50] 2026-03-03 08:11:17,232 | INFO     | ..............................
[2026-03-03 09:11:50] 2026-03-03 08:11:17,280 | INFO     | 
[2026-03-03 09:11:50] 2026-03-03 08:11:17,280 | INFO     | job summary report
[2026-03-03 09:11:50] 2026-03-03 08:11:17,280 | INFO     | --------------------------------------------------
[2026-03-03 09:11:50] 2026-03-03 08:11:17,280 | INFO     | PanDA job id: 7035904736
[2026-03-03 09:11:50] 2026-03-03 08:11:17,280 | INFO     | task id: 48838605
[2026-03-03 09:11:50] 2026-03-03 08:11:17,280 | INFO     | errors: (none)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,280 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | pilot state: finished 
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | transexitcode: 0
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | exeerrorcode: 0
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | exeerrordiag: 
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | exitcode: 0
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | exitmsg: OK
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | cpuconsumptiontime: 19737 s
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | nevents: 400
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | neventsw: 0
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | pid: 356877
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | pgrp: 356877
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | corecount: 4
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | event service: False
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | sizes: {0: 2282234, 11: 2282234, 5146: 2308613, 5147: 2317635, 5148: 2317691, 5151: 2317885}
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | --------------------------------------------------
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | 
[2026-03-03 09:11:50] 2026-03-03 08:11:17,281 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot116/slots/0
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | job 7035904736 has completed (purged errors)
[2026-03-03 09:11:50] 2026-03-03 08:11:17,301 | INFO     | overall cleanup function is called
[2026-03-03 09:11:50] 2026-03-03 08:11:18,308 | INFO     | --- collectZombieJob: --- 10, [356877]
[2026-03-03 09:11:50] 2026-03-03 08:11:18,308 | INFO     | zombie collector waiting for pid 356877
[2026-03-03 09:11:50] 2026-03-03 08:11:18,308 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 09:11:50] 2026-03-03 08:11:18,308 | INFO     | collected zombie processes
[2026-03-03 09:11:50] 2026-03-03 08:11:18,308 | INFO     | will attempt to kill all subprocesses of pid=356877
[2026-03-03 09:11:50] 2026-03-03 08:11:19,828 | INFO     | process IDs to be killed: [356877] (in reverse order)
[2026-03-03 09:11:50] 2026-03-03 08:11:19,841 | WARNING  | process 356877 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 09:11:50] 2026-03-03 08:11:20,028 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 09:11:50] 2026-03-03 08:11:20,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 09:11:50] 2026-03-03 08:11:20,092 | INFO     | did not find any defunct processes belonging to 356877
[2026-03-03 09:11:50] 2026-03-03 08:11:20,154 | INFO     | did not find any defunct processes belonging to 356877
[2026-03-03 09:11:50] 2026-03-03 08:11:20,154 | INFO     | ready for new job
[2026-03-03 09:11:50] 2026-03-03 08:11:20,155 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 09:11:50] 2026-03-03 08:11:20,156 | INFO     | **************************************
[2026-03-03 09:11:50] 2026-03-03 08:11:20,156 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 09:11:50] 2026-03-03 08:11:20,156 | INFO     | **************************************
[2026-03-03 09:11:50] 2026-03-03 08:11:20,156 | INFO     | 
[2026-03-03 09:11:50] 2026-03-03 08:11:20,165 | INFO     | architecture information:
[2026-03-03 09:11:50] 2026-03-03 08:11:20,165 | INFO     | executing command: cat /etc/os-release
[2026-03-03 09:11:50] 2026-03-03 08:11:20,179 | INFO     | cat /etc/os-release:
[2026-03-03 09:11:50] NAME="CentOS Linux"
[2026-03-03 09:11:50] VERSION="7 (Core)"
[2026-03-03 09:11:50] ID="centos"
[2026-03-03 09:11:50] ID_LIKE="rhel fedora"
[2026-03-03 09:11:50] VERSION_ID="7"
[2026-03-03 09:11:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 09:11:50] ANSI_COLOR="0;31"
[2026-03-03 09:11:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 09:11:50] HOME_URL="https://www.centos.org/"
[2026-03-03 09:11:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 09:11:50] 
[2026-03-03 09:11:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 09:11:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 09:11:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 09:11:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 09:11:50] 
[2026-03-03 09:11:50] 2026-03-03 08:11:20,180 | INFO     | **************************************
[2026-03-03 09:11:50] 2026-03-03 08:11:20,237 | INFO     | using path: /var/lib/boinc/var/slot116/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 09:11:50] 2026-03-03 08:11:20,654 | INFO     | number of running child processes to parent process 356877: 1
[2026-03-03 09:11:50] 2026-03-03 08:11:20,654 | INFO     | maximum number of monitored processes: 6
[2026-03-03 09:11:50] 2026-03-03 08:11:20,654 | INFO     | aborting job monitoring since job object (job id=7035904736) has expired
[2026-03-03 09:11:50] 2026-03-03 08:11:20,683 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/0
[2026-03-03 09:11:50] 2026-03-03 08:11:20,698 | INFO     | sufficient remaining disk space (21655191552 B)
[2026-03-03 09:11:50] 2026-03-03 08:11:20,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 09:11:50] 2026-03-03 08:11:20,699 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 09:11:50] 2026-03-03 08:11:20,699 | INFO     | update_server=False
[2026-03-03 09:11:50] 2026-03-03 08:11:20,699 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 09:11:50] 2026-03-03 08:11:20,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 09:11:50] 2026-03-03 08:11:20,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 09:11:50] 2026-03-03 08:11:20,700 | INFO     | will abort loop
[2026-03-03 09:11:50] 2026-03-03 08:11:20,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 09:11:50] 2026-03-03 08:11:21,489 | INFO     | all payload control threads have been joined
[2026-03-03 09:11:50] 2026-03-03 08:11:21,491 | INFO     | all data control threads have been joined
[2026-03-03 09:11:50] 2026-03-03 08:11:21,645 | INFO     | all job control threads have been joined
[2026-03-03 09:11:50] 2026-03-03 08:11:21,704 | INFO     | [job] retrieve thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:21,705 | INFO     | [job] job monitor thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,291 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 09:11:50] 2026-03-03 08:11:22,357 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,494 | INFO     | [payload] control thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,496 | INFO     | [data] control thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,504 | INFO     | [job] validate thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,584 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,645 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,651 | INFO     | [job] control thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,769 | INFO     | [data] copytool_in thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,971 | INFO     | [data] copytool_out thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:22,996 | INFO     | [payload] validate_post thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:23,059 | INFO     | [payload] failed_post thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:23,070 | INFO     | [monitor] cgroup control has ended
[2026-03-03 09:11:50] 2026-03-03 08:11:23,296 | INFO     | [job] queue monitor thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:24,705 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:31,020 | INFO     | job.realtimelogging is not enabled
[2026-03-03 09:11:50] 2026-03-03 08:11:32,025 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 09:11:50] 2026-03-03 08:11:33,131 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23253610354496)>', '<ExcThread(monitor, started 23253371598592)>']
[2026-03-03 09:11:50] 2026-03-03 08:11:38,157 | INFO     | all workflow threads have been joined
[2026-03-03 09:11:50] 2026-03-03 08:11:38,157 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 09:11:50] 2026-03-03 08:11:38,157 | INFO     | traces error code: 0
[2026-03-03 09:11:50] 2026-03-03 08:11:38,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 09:11:50] 2026-03-03 08:11:49,880 | INFO     | PID=351048 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-03 09:11:50] 2026-03-03 08:11:49,881 | INFO     | .. there are 47 such processes running
[2026-03-03 09:11:50] 2026-03-03 08:11:49,881 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 09:11:50] 2026-03-03 08:11:49,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 09:11:50] 2026-03-03 08:11:49,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 09:11:50] 2026-03-03 08:11:49,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 09:11:50] 2026-03-03 08:11:49,881 | INFO     | [monitor] control thread has ended
[2026-03-03 09:11:50] 2026-03-03 08:11:50,054 [wrapper] ==== pilot stdout END ====
[2026-03-03 09:11:50] 2026-03-03 08:11:50,056 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 09:11:50] 2026-03-03 08:11:50,057 [wrapper] pilotpid: 351048
[2026-03-03 09:11:50] 2026-03-03 08:11:50,059 [wrapper] Pilot exit status: 0
[2026-03-03 09:11:50] 2026-03-03 08:11:50,064 [wrapper] pandaids: 7035904736
[2026-03-03 09:11:50] 2026-03-03 08:11:50,168 [wrapper] cleanup supervisor_pilot 1016446 351049
[2026-03-03 09:11:50] 2026-03-03 08:11:50,169 [wrapper] Test setup, not cleaning
[2026-03-03 09:11:50] 2026-03-03 08:11:50,170 [wrapper] apfmon messages muted
[2026-03-03 09:11:50] 2026-03-03 08:11:50,171 [wrapper] ==== wrapper stdout END ====
[2026-03-03 09:11:50] 2026-03-03 08:11:50,172 [wrapper] ==== wrapper stderr END ====
[2026-03-03 09:11:50]  *** Error codes and diagnostics ***
[2026-03-03 09:11:50]     "exeErrorCode": 0,
[2026-03-03 09:11:50]     "exeErrorDiag": "",
[2026-03-03 09:11:50]     "pilotErrorCode": 0,
[2026-03-03 09:11:50]     "pilotErrorDiag": "",
[2026-03-03 09:11:50]  *** Listing of results directory ***
[2026-03-03 09:11:50] total 485448
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc      5111 Mar  2 10:36 queuedata.json
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc    584627 Mar  2 10:36 pilot3.tar.gz
[2026-03-03 09:11:50] -rwx------. 1 boinc boinc     36322 Mar  2 10:37 runpilot2-wrapper.sh
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc       100 Mar  3 07:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 09:11:50] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 07:44 run_atlas
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc       105 Mar  3 07:44 job.xml
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc      6705 Mar  3 07:45 init_data.xml
[2026-03-03 09:11:50] -rw-r--r--. 2 boinc boinc 281456101 Mar  3 07:45 EVNT.48343768._000082.pool.root.1
[2026-03-03 09:11:50] -rw-r--r--. 2 boinc boinc     15845 Mar  3 07:45 start_atlas.sh
[2026-03-03 09:11:50] drwxrwx--x. 2 boinc boinc      4096 Mar  3 07:45 shared
[2026-03-03 09:11:50] -rw-r--r--. 2 boinc boinc    597955 Mar  3 07:45 input.tar.gz
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc         0 Mar  3 07:45 boinc_lockfile
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc      2562 Mar  3 07:45 pandaJob.out
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc    998412 Mar  3 07:45 agis_schedconf.cvmfs.json
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc   1512931 Mar  3 07:45 agis_ddmendpoints.agis.ALL.json
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc       444 Mar  3 07:45 workernode_map.json
[2026-03-03 09:11:50] drwx------. 5 boinc boinc      4096 Mar  3 07:45 pilot3
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc 209684421 Mar  3 09:10 HITS.48838605._002148.pool.root.1
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc        95 Mar  3 09:11 pilot_heartbeat.json
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc       529 Mar  3 09:11 boinc_task_state.xml
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc      1030 Mar  3 09:11 memory_monitor_summary.json
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc    259859 Mar  3 09:11 log.48838605._002148.job.log.tgz.1
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc      6347 Mar  3 09:11 heartbeat.json
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc      8192 Mar  3 09:11 boinc_mmap_file
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc        27 Mar  3 09:11 wrapper_checkpoint.txt
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc       822 Mar  3 09:11 pilotlog.txt
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc    754947 Mar  3 09:11 log.48838605._002148.job.log.1
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc       357 Mar  3 09:11 output.list
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc       620 Mar  3 09:11 runtime_log
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc   1034240 Mar  3 09:11 result.tar.gz
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc      9221 Mar  3 09:11 runtime_log.err
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc       662 Mar  3 09:11 mPzMDmFtEH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmr1ALDmNeI8Lo.diag
[2026-03-03 09:11:50] -rw-r--r--. 1 boinc boinc     21739 Mar  3 09:11 stderr.txt
[2026-03-03 09:11:50] HITS file was successfully produced:
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc 209684421 Mar  3 09:10 shared/HITS.pool.root.1
[2026-03-03 09:11:50]  *** Contents of shared directory: ***
[2026-03-03 09:11:50] total 481252
[2026-03-03 09:11:50] -rw-r--r--. 2 boinc boinc 281456101 Mar  3 07:45 ATLAS.root_0
[2026-03-03 09:11:50] -rw-r--r--. 2 boinc boinc     15845 Mar  3 07:45 start_atlas.sh
[2026-03-03 09:11:50] -rw-r--r--. 2 boinc boinc    597955 Mar  3 07:45 input.tar.gz
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc 209684421 Mar  3 09:10 HITS.pool.root.1
[2026-03-03 09:11:50] -rw-------. 1 boinc boinc   1034240 Mar  3 09:11 result.tar.gz
09:11:51 (346514): run_atlas exited; CPU time 19954.563873
09:11:51 (346514): called boinc_finish(0)

</stderr_txt>
]]>

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