Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:32:49 (1054736): wrapper (7.7.26015): starting
09:32:49 (1054736): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 09:32:49] Arguments: --nthreads 4
[2026-03-03 09:32:49] Threads: 4
[2026-03-03 09:32:49] Checking for CVMFS
[2026-03-03 09:32:49] No cvmfs_config command found, will try listing directly
[2026-03-03 09:32:49] CVMFS is ok
[2026-03-03 09:32:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 09:32:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 09:32:49] Further information can be found at the LHC@home message board.
[2026-03-03 09:32:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 09:32:49] Checking for apptainer binary...
[2026-03-03 09:32:49] which: no apptainer in ((null))
[2026-03-03 09:32:49] apptainer is not installed, using version from CVMFS
[2026-03-03 09:32:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 09:32:50] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot196/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-03-03 09:32:50] apptainer works
[2026-03-03 09:32:50] Set ATHENA_PROC_NUMBER=4
[2026-03-03 09:32:50] Set ATHENA_CORE_NUMBER=4
[2026-03-03 09:32:50] Starting ATLAS job with PandaID=7035864287
[2026-03-03 09:32:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot196/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:59:15]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:59:15]  direct_access_lan=False
[2026-03-03 10:59:15]  direct_access_wan=False
[2026-03-03 10:59:15]  domain=
[2026-03-03 10:59:15]  filesize=261655
[2026-03-03 10:59:15]  filetype=log
[2026-03-03 10:59:15]  guid=2167827f-c281-4a2e-9839-10269db3455f
[2026-03-03 10:59:15]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-03 10:59:15]  is_altstaged=None
[2026-03-03 10:59:15]  is_tar=False
[2026-03-03 10:59:15]  lfn=log.48838521._002495.job.log.tgz.1
[2026-03-03 10:59:15]  mtime=0
[2026-03-03 10:59:15]  protocol_id=None
[2026-03-03 10:59:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 10:59:15]  replicas=None
[2026-03-03 10:59:15]  scope=mc23_13p6TeV
[2026-03-03 10:59:15]  status=None
[2026-03-03 10:59:15]  status_code=0
[2026-03-03 10:59:15]  storage_token=
[2026-03-03 10:59:15]  surl=/var/lib/boinc/var/slot196/slots/0/PanDA_Pilot-7035864287/log.48838521._002495.job.log.tgz.1
[2026-03-03 10:59:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/be/log.48838521._002495.job.log.tgz.1
[2026-03-03 10:59:15]  workdir=None
[2026-03-03 10:59:15] ]
[2026-03-03 10:59:15] 2026-03-03 09:58:13,295 | INFO     | transferring file log.48838521._002495.job.log.tgz.1 from /var/lib/boinc/var/slot196/slots/0/PanDA_Pilot-7035864287/log.48838521._002495.job.log.tgz.1 to /var/lib/
[2026-03-03 10:59:15] 2026-03-03 09:58:13,295 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot196/slots/0/PanDA_Pilot-7035864287/log.48838521._002495.job.log.tgz.1 /var/lib/boinc/var/slot196/slots/0/
[2026-03-03 10:59:15] 2026-03-03 09:58:13,311 | INFO     | adding to output.list: log.48838521._002495.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/be/log.48838521._002495.job.log.tg
[2026-03-03 10:59:15] 2026-03-03 09:58:13,312 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 10:59:15] 2026-03-03 09:58:13,312 | INFO     | summary of transferred files:
[2026-03-03 10:59:15] 2026-03-03 09:58:13,312 | INFO     |  -- lfn=log.48838521._002495.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 10:59:15] 2026-03-03 09:58:13,312 | INFO     | stage-out finished correctly
[2026-03-03 10:59:15] 2026-03-03 09:58:14,395 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 10:59:15] 2026-03-03 09:58:14,441 | INFO     | job 7035864287 has state=finished
[2026-03-03 10:59:15] 2026-03-03 09:58:14,441 | INFO     | preparing for final server update for job 7035864287 in state='finished'
[2026-03-03 10:59:15] 2026-03-03 09:58:14,441 | INFO     | reading metadata from: /var/lib/boinc/var/slot196/slots/0/PanDA_Pilot-7035864287/jobReport.json
[2026-03-03 10:59:15] 2026-03-03 09:58:14,443 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot196/slots/0/workernode_map.json
[2026-03-03 10:59:15] 2026-03-03 09:58:14,443 | INFO     | this job has now completed (state=finished)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,443 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,443 | INFO     | log transfer has been attempted: DONE
[2026-03-03 10:59:15] 2026-03-03 09:58:14,443 | INFO     | job 7035864287 has finished - writing final server update
[2026-03-03 10:59:15] 2026-03-03 09:58:14,443 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_16301/.job.ad'
[2026-03-03 10:59:15] 2026-03-03 09:58:14,443 | INFO     | total number of processed events: 400 (read)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,460 | INFO     | using path: /var/lib/boinc/var/slot196/slots/0/PanDA_Pilot-7035864287/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,460 | INFO     | extracted standard info from prmon json
[2026-03-03 10:59:15] 2026-03-03 09:58:14,460 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:59:15] 2026-03-03 09:58:14,460 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:59:15] 2026-03-03 09:58:14,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:59:15] 2026-03-03 09:58:14,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | fitting pss+swap vs Time
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | sum of square deviations: 141539398.0
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | sum of deviations: -202375491.00000018
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | mean x: 1772529424.0
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | mean y: 2352742.103896104
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | intersect: 2536746116.4062757
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | chi2: 0.00050348143627695
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | current memory leak: -1.43 B/s (using 77 data points, chi2=0.00)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | could have reported an average CPU frequency of 3634 MHz (6 samples)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | ..............................
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | . Timing measurements:
[2026-03-03 10:59:15] 2026-03-03 09:58:14,462 | INFO     | . get job = 0 s
[2026-03-03 10:59:15] 2026-03-03 09:58:14,463 | INFO     | . initial setup = 4 s
[2026-03-03 10:59:15] 2026-03-03 09:58:14,463 | INFO     | . payload setup = 4 s
[2026-03-03 10:59:15] 2026-03-03 09:58:14,463 | INFO     | . stage-in = 0 s
[2026-03-03 10:59:15] 2026-03-03 09:58:14,463 | INFO     | . payload execution = 5092 s
[2026-03-03 10:59:15] 2026-03-03 09:58:14,463 | INFO     | . stage-out = 0 s
[2026-03-03 10:59:15] 2026-03-03 09:58:14,463 | INFO     | . log creation = 0 s
[2026-03-03 10:59:15] 2026-03-03 09:58:14,463 | INFO     | ..............................
[2026-03-03 10:59:15] 2026-03-03 09:58:14,535 | INFO     | 
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | job summary report
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | --------------------------------------------------
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | PanDA job id: 7035864287
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | task id: 48838521
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | errors: (none)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | pilot state: finished 
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | transexitcode: 0
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | exeerrorcode: 0
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | exeerrordiag: 
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | exitcode: 0
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | exitmsg: OK
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | cpuconsumptiontime: 19621 s
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | nevents: 400
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | neventsw: 0
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | pid: 1065463
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | pgrp: 1065463
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | corecount: 4
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | event service: False
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | sizes: {0: 2282024, 1: 2282286, 11: 2282314, 5100: 2308699, 5101: 2317721, 5102: 2318099}
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | --------------------------------------------------
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | 
[2026-03-03 10:59:15] 2026-03-03 09:58:14,536 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot196/slots/0
[2026-03-03 10:59:15] 2026-03-03 09:58:14,552 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | job 7035864287 has completed (purged errors)
[2026-03-03 10:59:15] 2026-03-03 09:58:14,553 | INFO     | overall cleanup function is called
[2026-03-03 10:59:15] 2026-03-03 09:58:15,560 | INFO     | --- collectZombieJob: --- 10, [1065463]
[2026-03-03 10:59:15] 2026-03-03 09:58:15,561 | INFO     | zombie collector waiting for pid 1065463
[2026-03-03 10:59:15] 2026-03-03 09:58:15,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:59:15] 2026-03-03 09:58:15,561 | INFO     | collected zombie processes
[2026-03-03 10:59:15] 2026-03-03 09:58:15,561 | INFO     | will attempt to kill all subprocesses of pid=1065463
[2026-03-03 10:59:15] 2026-03-03 09:58:15,937 | INFO     | process IDs to be killed: [1065463] (in reverse order)
[2026-03-03 10:59:15] 2026-03-03 09:58:16,115 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:59:15] 2026-03-03 09:58:16,115 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:59:15] 2026-03-03 09:58:16,139 | INFO     | did not find any defunct processes belonging to 1065463
[2026-03-03 10:59:15] 2026-03-03 09:58:16,161 | INFO     | did not find any defunct processes belonging to 1065463
[2026-03-03 10:59:15] 2026-03-03 09:58:16,162 | INFO     | ready for new job
[2026-03-03 10:59:15] 2026-03-03 09:58:16,162 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:59:15] 2026-03-03 09:58:16,163 | INFO     | **************************************
[2026-03-03 10:59:15] 2026-03-03 09:58:16,163 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:59:15] 2026-03-03 09:58:16,163 | INFO     | **************************************
[2026-03-03 10:59:15] 2026-03-03 09:58:16,163 | INFO     | 
[2026-03-03 10:59:15] 2026-03-03 09:58:16,169 | INFO     | architecture information:
[2026-03-03 10:59:15] 2026-03-03 09:58:16,170 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:59:15] 2026-03-03 09:58:16,185 | INFO     | cat /etc/os-release:
[2026-03-03 10:59:15] NAME="CentOS Linux"
[2026-03-03 10:59:15] VERSION="7 (Core)"
[2026-03-03 10:59:15] ID="centos"
[2026-03-03 10:59:15] ID_LIKE="rhel fedora"
[2026-03-03 10:59:15] VERSION_ID="7"
[2026-03-03 10:59:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:59:15] ANSI_COLOR="0;31"
[2026-03-03 10:59:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:59:15] HOME_URL="https://www.centos.org/"
[2026-03-03 10:59:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:59:15] 
[2026-03-03 10:59:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:59:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:59:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:59:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:59:15] 
[2026-03-03 10:59:15] 2026-03-03 09:58:16,185 | INFO     | **************************************
[2026-03-03 10:59:15] 2026-03-03 09:58:16,689 | INFO     | executing command: df -mP /var/lib/boinc/var/slot196/slots/0
[2026-03-03 10:59:15] 2026-03-03 09:58:16,702 | INFO     | sufficient remaining disk space (21169700864 B)
[2026-03-03 10:59:15] 2026-03-03 09:58:16,703 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:59:15] 2026-03-03 09:58:16,703 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:59:15] 2026-03-03 09:58:16,703 | INFO     | update_server=False
[2026-03-03 10:59:15] 2026-03-03 09:58:16,703 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:59:15] 2026-03-03 09:58:16,703 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:59:15] 2026-03-03 09:58:16,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:59:15] 2026-03-03 09:58:16,704 | INFO     | aborting loop
[2026-03-03 10:59:15] 2026-03-03 09:58:16,704 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:59:15] 2026-03-03 09:58:16,820 | INFO     | all job control threads have been joined
[2026-03-03 10:59:15] 2026-03-03 09:58:17,555 | INFO     | all data control threads have been joined
[2026-03-03 10:59:15] 2026-03-03 09:58:17,708 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:17,709 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:17,751 | INFO     | all payload control threads have been joined
[2026-03-03 10:59:15] 2026-03-03 09:58:17,826 | INFO     | [job] control thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:17,826 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,187 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,235 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,508 | INFO     | [job] validate thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,561 | INFO     | [data] control thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,668 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,709 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,742 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,756 | INFO     | [payload] control thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,820 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:18,840 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:19,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:59:15] 2026-03-03 09:58:20,524 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:20,712 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:59:15] 2026-03-03 09:58:46,272 | INFO     | PID=1059254 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 10:59:15] 2026-03-03 09:58:46,272 | INFO     | .. there are 45 such processes running
[2026-03-03 10:59:15] 2026-03-03 09:58:46,273 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:59:15] 2026-03-03 09:58:46,273 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:59:15] 2026-03-03 09:58:46,273 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:59:15] 2026-03-03 09:59:09,134 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:59:15] 2026-03-03 09:59:10,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22601431562048)>', '<ExcThread(monitor, started 22601118238464)>']
[2026-03-03 10:59:15] 2026-03-03 09:59:11,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:59:15] 2026-03-03 09:59:11,393 | INFO     | [monitor] control thread has ended
[2026-03-03 10:59:15] 2026-03-03 09:59:15,519 | INFO     | all workflow threads have been joined
[2026-03-03 10:59:15] 2026-03-03 09:59:15,519 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:59:15] 2026-03-03 09:59:15,519 | INFO     | traces error code: 0
[2026-03-03 10:59:15] 2026-03-03 09:59:15,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:59:15] 2026-03-03 09:59:15,654 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:59:15] 2026-03-03 09:59:15,657 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:59:15] 2026-03-03 09:59:15,659 [wrapper] pilotpid: 1059254
[2026-03-03 10:59:15] 2026-03-03 09:59:15,661 [wrapper] Pilot exit status: 0
[2026-03-03 10:59:15] 2026-03-03 09:59:15,670 [wrapper] pandaids: 7035864287
[2026-03-03 10:59:15] 2026-03-03 09:59:15,773 [wrapper] cleanup supervisor_pilot 1689307 1059255
[2026-03-03 10:59:15] 2026-03-03 09:59:15,776 [wrapper] Test setup, not cleaning
[2026-03-03 10:59:15] 2026-03-03 09:59:15,778 [wrapper] apfmon messages muted
[2026-03-03 10:59:15] 2026-03-03 09:59:15,780 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:59:15] 2026-03-03 09:59:15,782 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:59:15]  *** Error codes and diagnostics ***
[2026-03-03 10:59:15]     "exeErrorCode": 0,
[2026-03-03 10:59:15]     "exeErrorDiag": "",
[2026-03-03 10:59:15]     "pilotErrorCode": 0,
[2026-03-03 10:59:15]     "pilotErrorDiag": "",
[2026-03-03 10:59:15]  *** Listing of results directory ***
[2026-03-03 10:59:15] total 473300
[2026-03-03 10:59:15] -rwx------. 1 boinc boinc     36322 Mar  2 08:36 runpilot2-wrapper.sh
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc      5111 Mar  2 08:38 queuedata.json
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc    584627 Mar  2 08:38 pilot3.tar.gz
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc       100 Mar  3 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:59:15] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 09:32 run_atlas
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc       105 Mar  3 09:32 job.xml
[2026-03-03 10:59:15] -rw-r--r--. 2 boinc boinc     15845 Mar  3 09:32 start_atlas.sh
[2026-03-03 10:59:15] drwxrwx--x. 2 boinc boinc      4096 Mar  3 09:32 shared
[2026-03-03 10:59:15] -rw-r--r--. 2 boinc boinc    597968 Mar  3 09:32 input.tar.gz
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc      6705 Mar  3 09:32 init_data.xml
[2026-03-03 10:59:15] -rw-r--r--. 2 boinc boinc 271365537 Mar  3 09:32 EVNT.48343683._000105.pool.root.1
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc         0 Mar  3 09:32 boinc_lockfile
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc      2563 Mar  3 09:32 pandaJob.out
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc    998420 Mar  3 09:32 agis_schedconf.cvmfs.json
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc   1512931 Mar  3 09:32 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc       445 Mar  3 09:33 workernode_map.json
[2026-03-03 10:59:15] drwx------. 5 boinc boinc      4096 Mar  3 09:33 pilot3
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc 207349678 Mar  3 10:57 HITS.48838521._002495.pool.root.1
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc        95 Mar  3 10:57 pilot_heartbeat.json
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc       529 Mar  3 10:58 boinc_task_state.xml
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc      1043 Mar  3 10:58 memory_monitor_summary.json
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc    261655 Mar  3 10:58 log.48838521._002495.job.log.tgz.1
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc      6351 Mar  3 10:58 heartbeat.json
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc      8192 Mar  3 10:59 boinc_mmap_file
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc        27 Mar  3 10:59 wrapper_checkpoint.txt
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc      4830 Mar  3 10:59 pilotlog.txt
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc    749212 Mar  3 10:59 log.48838521._002495.job.log.1
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc       357 Mar  3 10:59 output.list
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc       620 Mar  3 10:59 runtime_log
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc   1024000 Mar  3 10:59 result.tar.gz
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc      9221 Mar  3 10:59 runtime_log.err
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc       662 Mar  3 10:59 elzKDmX0CH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHyCLDmZ4NbDo.diag
[2026-03-03 10:59:15] -rw-r--r--. 1 boinc boinc     20843 Mar  3 10:59 stderr.txt
[2026-03-03 10:59:15] HITS file was successfully produced:
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc 207349678 Mar  3 10:57 shared/HITS.pool.root.1
[2026-03-03 10:59:15]  *** Contents of shared directory: ***
[2026-03-03 10:59:15] total 469108
[2026-03-03 10:59:15] -rw-r--r--. 2 boinc boinc     15845 Mar  3 09:32 start_atlas.sh
[2026-03-03 10:59:15] -rw-r--r--. 2 boinc boinc    597968 Mar  3 09:32 input.tar.gz
[2026-03-03 10:59:15] -rw-r--r--. 2 boinc boinc 271365537 Mar  3 09:32 ATLAS.root_0
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc 207349678 Mar  3 10:57 HITS.pool.root.1
[2026-03-03 10:59:15] -rw-------. 1 boinc boinc   1024000 Mar  3 10:59 result.tar.gz
10:59:17 (1054736): run_atlas exited; CPU time 19816.886641
10:59:17 (1054736): called boinc_finish(0)

</stderr_txt>
]]>

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