Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:38:25 (1180461): wrapper (7.7.26015): starting
08:38:25 (1180461): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 08:38:25] Arguments: --nthreads 4
[2026-03-03 08:38:25] Threads: 4
[2026-03-03 08:38:25] Checking for CVMFS
[2026-03-03 08:38:25] No cvmfs_config command found, will try listing directly
[2026-03-03 08:38:25] CVMFS is ok
[2026-03-03 08:38:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 08:38:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 08:38:25] Further information can be found at the LHC@home message board.
[2026-03-03 08:38:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 08:38:25] Checking for apptainer binary...
[2026-03-03 08:38:25] which: no apptainer in ((null))
[2026-03-03 08:38:25] apptainer is not installed, using version from CVMFS
[2026-03-03 08:38:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 08:38:25] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-03 08:38:25] apptainer works
[2026-03-03 08:38:25] Set ATHENA_PROC_NUMBER=4
[2026-03-03 08:38:25] Set ATHENA_CORE_NUMBER=4
[2026-03-03 08:38:25] Starting ATLAS job with PandaID=7035863514
[2026-03-03 08:38:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:07:51]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:07:51]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-03 10:07:51]  is_altstaged=None
[2026-03-03 10:07:51]  is_tar=False
[2026-03-03 10:07:51]  lfn=log.48838521._002116.job.log.tgz.1
[2026-03-03 10:07:51]  mtime=0
[2026-03-03 10:07:51]  protocol_id=None
[2026-03-03 10:07:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 10:07:51]  replicas=None
[2026-03-03 10:07:51]  scope=mc23_13p6TeV
[2026-03-03 10:07:51]  status=None
[2026-03-03 10:07:51]  status_code=0
[2026-03-03 10:07:51]  storage_token=
[2026-03-03 10:07:51]  surl=/var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7035863514/log.48838521._002116.job.log.tgz.1
[2026-03-03 10:07:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/5c/log.48838521._002116.job.log.tgz.1
[2026-03-03 10:07:51]  workdir=None
[2026-03-03 10:07:51] ]
[2026-03-03 10:07:51] 2026-03-03 09:06:44,086 | INFO     | transferring file log.48838521._002116.job.log.tgz.1 from /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7035863514/log.48838521._002116.job.log.tgz.1 to /var/lib/
[2026-03-03 10:07:51] 2026-03-03 09:06:44,086 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7035863514/log.48838521._002116.job.log.tgz.1 /var/lib/boinc/var/slot124/slots/0/
[2026-03-03 10:07:51] 2026-03-03 09:06:44,109 | INFO     | adding to output.list: log.48838521._002116.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/5c/log.48838521._002116.job.log.tg
[2026-03-03 10:07:51] 2026-03-03 09:06:44,109 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 10:07:51] 2026-03-03 09:06:44,109 | INFO     | summary of transferred files:
[2026-03-03 10:07:51] 2026-03-03 09:06:44,109 | INFO     |  -- lfn=log.48838521._002116.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 10:07:51] 2026-03-03 09:06:44,109 | INFO     | stage-out finished correctly
[2026-03-03 10:07:51] 2026-03-03 09:06:44,931 | INFO     | time since job start (5288s) is within the limit (349056.0s)
[2026-03-03 10:07:51] 2026-03-03 09:06:45,778 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 10:07:51] 2026-03-03 09:06:45,964 | INFO     | monitor loop #388: job 0:7035863514 is in state 'finished'
[2026-03-03 10:07:51] 2026-03-03 09:06:45,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,097 | INFO     | job 7035863514 has state=finished
[2026-03-03 10:07:51] 2026-03-03 09:06:46,097 | INFO     | preparing for final server update for job 7035863514 in state='finished'
[2026-03-03 10:07:51] 2026-03-03 09:06:46,097 | INFO     | reading metadata from: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7035863514/jobReport.json
[2026-03-03 10:07:51] 2026-03-03 09:06:46,099 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot124/slots/0/workernode_map.json
[2026-03-03 10:07:51] 2026-03-03 09:06:46,099 | INFO     | this job has now completed (state=finished)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,099 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,099 | INFO     | log transfer has been attempted: DONE
[2026-03-03 10:07:51] 2026-03-03 09:06:46,099 | INFO     | job 7035863514 has finished - writing final server update
[2026-03-03 10:07:51] 2026-03-03 09:06:46,099 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_199595/.job.ad'
[2026-03-03 10:07:51] 2026-03-03 09:06:46,100 | INFO     | total number of processed events: 400 (read)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,116 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7035863514/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,116 | INFO     | extracted standard info from prmon json
[2026-03-03 10:07:51] 2026-03-03 09:06:46,116 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:07:51] 2026-03-03 09:06:46,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:07:51] 2026-03-03 09:06:46,116 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:07:51] 2026-03-03 09:06:46,116 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:07:51] 2026-03-03 09:06:46,117 | INFO     | fitting pss+swap vs Time
[2026-03-03 10:07:51] 2026-03-03 09:06:46,117 | INFO     | sum of square deviations: 158737860.0
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | sum of deviations: -40007399.0
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | mean x: 1772526250.5
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | mean y: 2349094.5
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | intersect: 449086658.81973726
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | chi2: 0.0007064601194988072
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | current memory leak: -0.25 B/s (using 80 data points, chi2=0.00)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | could have reported an average CPU frequency of 3636 MHz (6 samples)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | ..............................
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | . Timing measurements:
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | . get job = 0 s
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | . initial setup = 4 s
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | . payload setup = 4 s
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | . stage-in = 0 s
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | . payload execution = 5266 s
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | . stage-out = 0 s
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | . log creation = 0 s
[2026-03-03 10:07:51] 2026-03-03 09:06:46,118 | INFO     | ..............................
[2026-03-03 10:07:51] 2026-03-03 09:06:46,162 | INFO     | 
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | job summary report
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | --------------------------------------------------
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | PanDA job id: 7035863514
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | task id: 48838521
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | errors: (none)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | pilot state: finished 
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | transexitcode: 0
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | exeerrorcode: 0
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | exeerrordiag: 
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | exitcode: 0
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | exitmsg: OK
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | cpuconsumptiontime: 20340 s
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | nevents: 400
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | neventsw: 0
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | pid: 1190726
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | pgrp: 1190726
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | corecount: 4
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | event service: False
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | sizes: {0: 2282284, 11: 2282284, 5274: 2308724, 5276: 2317746, 5278: 2317996}
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | --------------------------------------------------
[2026-03-03 10:07:51] 2026-03-03 09:06:46,163 | INFO     | 
[2026-03-03 10:07:51] 2026-03-03 09:06:46,164 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot124/slots/0
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,182 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,182 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,182 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:07:51] 2026-03-03 09:06:46,182 | INFO     | job 7035863514 has completed (purged errors)
[2026-03-03 10:07:51] 2026-03-03 09:06:46,182 | INFO     | overall cleanup function is called
[2026-03-03 10:07:51] 2026-03-03 09:06:47,188 | INFO     | --- collectZombieJob: --- 10, [1190726]
[2026-03-03 10:07:51] 2026-03-03 09:06:47,188 | INFO     | zombie collector waiting for pid 1190726
[2026-03-03 10:07:51] 2026-03-03 09:06:47,188 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:07:51] 2026-03-03 09:06:47,188 | INFO     | collected zombie processes
[2026-03-03 10:07:51] 2026-03-03 09:06:47,188 | INFO     | will attempt to kill all subprocesses of pid=1190726
[2026-03-03 10:07:51] 2026-03-03 09:06:47,572 | INFO     | process IDs to be killed: [1190726] (in reverse order)
[2026-03-03 10:07:51] 2026-03-03 09:06:47,763 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:07:51] 2026-03-03 09:06:47,764 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:07:51] 2026-03-03 09:06:47,791 | INFO     | did not find any defunct processes belonging to 1190726
[2026-03-03 10:07:51] 2026-03-03 09:06:47,813 | INFO     | did not find any defunct processes belonging to 1190726
[2026-03-03 10:07:51] 2026-03-03 09:06:47,814 | INFO     | ready for new job
[2026-03-03 10:07:51] 2026-03-03 09:06:47,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:07:51] 2026-03-03 09:06:47,815 | INFO     | **************************************
[2026-03-03 10:07:51] 2026-03-03 09:06:47,815 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:07:51] 2026-03-03 09:06:47,815 | INFO     | **************************************
[2026-03-03 10:07:51] 2026-03-03 09:06:47,815 | INFO     | 
[2026-03-03 10:07:51] 2026-03-03 09:06:47,820 | INFO     | architecture information:
[2026-03-03 10:07:51] 2026-03-03 09:06:47,820 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:07:51] 2026-03-03 09:06:47,832 | INFO     | cat /etc/os-release:
[2026-03-03 10:07:51] NAME="CentOS Linux"
[2026-03-03 10:07:51] VERSION="7 (Core)"
[2026-03-03 10:07:51] ID="centos"
[2026-03-03 10:07:51] ID_LIKE="rhel fedora"
[2026-03-03 10:07:51] VERSION_ID="7"
[2026-03-03 10:07:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:07:51] ANSI_COLOR="0;31"
[2026-03-03 10:07:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:07:51] HOME_URL="https://www.centos.org/"
[2026-03-03 10:07:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:07:51] 
[2026-03-03 10:07:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:07:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:07:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:07:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:07:51] 
[2026-03-03 10:07:51] 2026-03-03 09:06:47,832 | INFO     | **************************************
[2026-03-03 10:07:51] 2026-03-03 09:06:48,334 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-03-03 10:07:51] 2026-03-03 09:06:48,350 | INFO     | sufficient remaining disk space (22103982080 B)
[2026-03-03 10:07:51] 2026-03-03 09:06:48,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:07:51] 2026-03-03 09:06:48,350 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:07:51] 2026-03-03 09:06:48,353 | INFO     | update_server=False
[2026-03-03 10:07:51] 2026-03-03 09:06:48,353 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:07:51] 2026-03-03 09:06:48,399 | INFO     | all job control threads have been joined
[2026-03-03 10:07:51] 2026-03-03 09:06:48,467 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-03 10:07:51] 2026-03-03 09:06:48,467 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-03 10:07:51] 2026-03-03 09:06:48,467 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:07:51] 2026-03-03 09:06:48,467 | INFO     | will abort loop
[2026-03-03 10:07:51] 2026-03-03 09:06:49,075 | INFO     | all data control threads have been joined
[2026-03-03 10:07:51] 2026-03-03 09:06:49,354 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:49,366 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:49,404 | INFO     | [job] control thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:49,472 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:49,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:07:51] 2026-03-03 09:06:49,779 | INFO     | all payload control threads have been joined
[2026-03-03 10:07:51] 2026-03-03 09:06:49,815 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:49,927 | INFO     | [job] validate thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:50,080 | INFO     | [data] control thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:50,107 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:50,180 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:50,358 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:50,360 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:50,784 | INFO     | [payload] control thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:51,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:07:51] 2026-03-03 09:06:51,674 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:51,834 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:07:51] 2026-03-03 09:06:52,174 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:55,839 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:06:59,035 | INFO     | job.realtimelogging is not enabled
[2026-03-03 10:07:51] 2026-03-03 09:07:00,040 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:07:51] 2026-03-03 09:07:18,462 | INFO     | PID=1184998 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 10:07:51] 2026-03-03 09:07:18,465 | INFO     | .. there are 45 such processes running
[2026-03-03 10:07:51] 2026-03-03 09:07:18,465 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:07:51] 2026-03-03 09:07:18,465 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:07:51] 2026-03-03 09:07:18,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:07:51] 2026-03-03 09:07:44,828 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:07:51] 2026-03-03 09:07:46,411 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22706069002048)>', '<ExcThread(monitor, started 22705824073472)>']
[2026-03-03 10:07:51] 2026-03-03 09:07:46,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:07:51] 2026-03-03 09:07:46,594 | INFO     | [monitor] control thread has ended
[2026-03-03 10:07:51] 2026-03-03 09:07:51,436 | INFO     | all workflow threads have been joined
[2026-03-03 10:07:51] 2026-03-03 09:07:51,439 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:07:51] 2026-03-03 09:07:51,439 | INFO     | traces error code: 0
[2026-03-03 10:07:51] 2026-03-03 09:07:51,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:07:51] 2026-03-03 09:07:51,540 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:07:51] 2026-03-03 09:07:51,543 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:07:51] 2026-03-03 09:07:51,544 [wrapper] pilotpid: 1184998
[2026-03-03 10:07:51] 2026-03-03 09:07:51,546 [wrapper] Pilot exit status: 0
[2026-03-03 10:07:51] 2026-03-03 09:07:51,553 [wrapper] pandaids: 7035863514
[2026-03-03 10:07:51] 2026-03-03 09:07:51,654 [wrapper] cleanup supervisor_pilot 1705403 1184999
[2026-03-03 10:07:51] 2026-03-03 09:07:51,657 [wrapper] Test setup, not cleaning
[2026-03-03 10:07:51] 2026-03-03 09:07:51,658 [wrapper] apfmon messages muted
[2026-03-03 10:07:51] 2026-03-03 09:07:51,663 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:07:51] 2026-03-03 09:07:51,665 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:07:51]  *** Error codes and diagnostics ***
[2026-03-03 10:07:51]     "exeErrorCode": 0,
[2026-03-03 10:07:51]     "exeErrorDiag": "",
[2026-03-03 10:07:51]     "pilotErrorCode": 0,
[2026-03-03 10:07:51]     "pilotErrorDiag": "",
[2026-03-03 10:07:51]  *** Listing of results directory ***
[2026-03-03 10:07:51] total 468400
[2026-03-03 10:07:51] -rwx------. 1 boinc boinc     36322 Mar  2 08:36 runpilot2-wrapper.sh
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc      5111 Mar  2 08:38 queuedata.json
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc    584627 Mar  2 08:38 pilot3.tar.gz
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc       100 Mar  3 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:07:51] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 08:38 run_atlas
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc       105 Mar  3 08:38 job.xml
[2026-03-03 10:07:51] -rw-r--r--. 2 boinc boinc    597954 Mar  3 08:38 input.tar.gz
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc      6708 Mar  3 08:38 init_data.xml
[2026-03-03 10:07:51] -rw-r--r--. 2 boinc boinc 269232932 Mar  3 08:38 EVNT.48343683._000085.pool.root.1
[2026-03-03 10:07:51] -rw-r--r--. 2 boinc boinc     15845 Mar  3 08:38 start_atlas.sh
[2026-03-03 10:07:51] drwxrwx--x. 2 boinc boinc      4096 Mar  3 08:38 shared
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc         0 Mar  3 08:38 boinc_lockfile
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc      2562 Mar  3 08:38 pandaJob.out
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc    998412 Mar  3 08:38 agis_schedconf.cvmfs.json
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc   1512931 Mar  3 08:38 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc       445 Mar  3 08:38 workernode_map.json
[2026-03-03 10:07:51] drwx------. 5 boinc boinc      4096 Mar  3 08:38 pilot3
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc 204402366 Mar  3 10:06 HITS.48838521._002116.pool.root.1
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc        95 Mar  3 10:06 pilot_heartbeat.json
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc       529 Mar  3 10:06 boinc_task_state.xml
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc      1028 Mar  3 10:06 memory_monitor_summary.json
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc    264006 Mar  3 10:06 log.48838521._002116.job.log.tgz.1
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc      6348 Mar  3 10:06 heartbeat.json
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc      8192 Mar  3 10:07 boinc_mmap_file
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc        27 Mar  3 10:07 wrapper_checkpoint.txt
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc      5088 Mar  3 10:07 pilotlog.txt
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc    774517 Mar  3 10:07 log.48838521._002116.job.log.1
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc       357 Mar  3 10:07 output.list
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc       620 Mar  3 10:07 runtime_log
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc   1054720 Mar  3 10:07 result.tar.gz
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc       661 Mar  3 10:07 x1sLDmP0CH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmszALDmafuSem.diag
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc      9221 Mar  3 10:07 runtime_log.err
[2026-03-03 10:07:51] -rw-r--r--. 1 boinc boinc     21254 Mar  3 10:07 stderr.txt
[2026-03-03 10:07:51] HITS file was successfully produced:
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc 204402366 Mar  3 10:06 shared/HITS.pool.root.1
[2026-03-03 10:07:51]  *** Contents of shared directory: ***
[2026-03-03 10:07:51] total 464176
[2026-03-03 10:07:51] -rw-r--r--. 2 boinc boinc    597954 Mar  3 08:38 input.tar.gz
[2026-03-03 10:07:51] -rw-r--r--. 2 boinc boinc 269232932 Mar  3 08:38 ATLAS.root_0
[2026-03-03 10:07:51] -rw-r--r--. 2 boinc boinc     15845 Mar  3 08:38 start_atlas.sh
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc 204402366 Mar  3 10:06 HITS.pool.root.1
[2026-03-03 10:07:51] -rw-------. 1 boinc boinc   1054720 Mar  3 10:07 result.tar.gz
10:07:52 (1180461): run_atlas exited; CPU time 20552.529109
10:07:52 (1180461): called boinc_finish(0)

</stderr_txt>
]]>

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