Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:26:27 (16104): wrapper (7.7.26015): starting
21:26:27 (16104): wrapper: running run_atlas (--nthreads 8)
[2026-03-02 21:26:27] Arguments: --nthreads 8
[2026-03-02 21:26:27] Threads: 8
[2026-03-02 21:26:27] Checking for CVMFS
[2026-03-02 21:26:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 21:26:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 21:26:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 21:26:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 21:26:31] 2.11.2.0 10929 110755 134280 156819 1 53 24712300 25165824 899 130560 158 35467136 99.842 20896280 765 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-02 21:26:31] CVMFS is ok
[2026-03-02 21:26:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 21:26:31] Checking for apptainer binary...
[2026-03-02 21:26:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 21:26:31] Running /usr/bin/apptainer --version
[2026-03-02 21:26:31] apptainer version 1.3.2-1.el7
[2026-03-02 21:26:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 21:26:48] cg-vwn424.simple-grid.lan
[2026-03-02 21:26:48] apptainer works
[2026-03-02 21:26:48] Set ATHENA_PROC_NUMBER=8
[2026-03-02 21:26:48] Set ATHENA_CORE_NUMBER=8
[2026-03-02 21:26:48] Starting ATLAS job with PandaID=7035796871
[2026-03-02 21:26:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 06:46:19]  *** The last 200 lines of the pilot log: ***
[2026-03-03 06:46:19] 2026-03-03 05:45:24,559 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7035796871/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 06:46:19] 2026-03-03 05:45:24,560 | INFO     | extracted standard info from prmon json
[2026-03-03 06:46:19] 2026-03-03 05:45:24,560 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 06:46:19] 2026-03-03 05:45:24,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 06:46:19] 2026-03-03 05:45:24,561 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 06:46:19] 2026-03-03 05:45:24,561 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 06:46:19] 2026-03-03 05:45:24,572 | INFO     | fitting pss+swap vs Time
[2026-03-03 06:46:19] 2026-03-03 05:45:24,573 | INFO     | sum of square deviations: 48556035990.0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,587 | INFO     | sum of deviations: 292505411906.99994
[2026-03-03 06:46:19] 2026-03-03 05:45:24,587 | INFO     | mean x: 1772500301.0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,588 | INFO     | mean y: 2505771.5936920224
[2026-03-03 06:46:19] 2026-03-03 05:45:24,588 | INFO     | intersect: -10675176623.156637
[2026-03-03 06:46:19] 2026-03-03 05:45:24,589 | INFO     | chi2: 9.245191668909548
[2026-03-03 06:46:19] 2026-03-03 05:45:24,590 | INFO     | sum of square deviations: 47217248097.5
[2026-03-03 06:46:19] 2026-03-03 05:45:24,599 | INFO     | sum of deviations: 362417481864.49994
[2026-03-03 06:46:19] 2026-03-03 05:45:24,599 | INFO     | mean x: 1772500148.5
[2026-03-03 06:46:19] 2026-03-03 05:45:24,599 | INFO     | mean y: 2513688.3988764044
[2026-03-03 06:46:19] 2026-03-03 05:45:24,599 | INFO     | intersect: -13602367288.513338
[2026-03-03 06:46:19] 2026-03-03 05:45:24,600 | INFO     | chi2: 7.758751899309059
[2026-03-03 06:46:19] 2026-03-03 05:45:24,600 | INFO     | current chi2=7.758751899309059 (change=16.07797677790937 %)
[2026-03-03 06:46:19] 2026-03-03 05:45:24,600 | INFO     | right removable region: 533
[2026-03-03 06:46:19] 2026-03-03 05:45:24,601 | INFO     | sum of square deviations: 47217248097.5
[2026-03-03 06:46:19] 2026-03-03 05:45:24,610 | INFO     | sum of deviations: 97594062778.50005
[2026-03-03 06:46:19] 2026-03-03 05:45:24,610 | INFO     | mean x: 1772500453.5
[2026-03-03 06:46:19] 2026-03-03 05:45:24,610 | INFO     | mean y: 2527967.5786516853
[2026-03-03 06:46:19] 2026-03-03 05:45:24,610 | INFO     | intersect: -3661080724.240849
[2026-03-03 06:46:19] 2026-03-03 05:45:24,611 | INFO     | chi2: 4.4672344681990275
[2026-03-03 06:46:19] 2026-03-03 05:45:24,611 | INFO     | current chi2=4.4672344681990275 (change=51.68045587176098 %)
[2026-03-03 06:46:19] 2026-03-03 05:45:24,612 | INFO     | sum of square deviations: 45903297880.0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,621 | INFO     | sum of deviations: -50204748442.999985
[2026-03-03 06:46:19] 2026-03-03 05:45:24,621 | INFO     | mean x: 1772500606.0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,621 | INFO     | mean y: 2545110.257088847
[2026-03-03 06:46:19] 2026-03-03 05:45:24,622 | INFO     | intersect: 1941141053.231089
[2026-03-03 06:46:19] 2026-03-03 05:45:24,622 | INFO     | chi2: 1.806890233478526
[2026-03-03 06:46:19] 2026-03-03 05:45:24,623 | INFO     | current chi2=1.806890233478526 (change=59.55237527062294 %)
[2026-03-03 06:46:19] 2026-03-03 05:45:24,623 | INFO     | sum of square deviations: 44613952775.0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,632 | INFO     | sum of deviations: -73739293009.0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,632 | INFO     | mean x: 1772500758.5
[2026-03-03 06:46:19] 2026-03-03 05:45:24,632 | INFO     | mean y: 2547885.534351145
[2026-03-03 06:46:19] 2026-03-03 05:45:24,632 | INFO     | intersect: 2932190848.328433
[2026-03-03 06:46:19] 2026-03-03 05:45:24,633 | INFO     | chi2: 1.7151454926385727
[2026-03-03 06:46:19] 2026-03-03 05:45:24,633 | INFO     | current chi2=1.7151454926385727 (change=5.077493869859005 %)
[2026-03-03 06:46:19] 2026-03-03 05:45:24,633 | INFO     | left removable region: 30
[2026-03-03 06:46:19] 2026-03-03 05:45:24,634 | INFO     | sum of square deviations: 39462142692.0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,642 | INFO     | sum of deviations: 20710622033.999996
[2026-03-03 06:46:19] 2026-03-03 05:45:24,642 | INFO     | mean x: 1772501033.0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,643 | INFO     | mean y: 2553443.614314115
[2026-03-03 06:46:19] 2026-03-03 05:45:24,643 | INFO     | intersect: -927695053.9357072
[2026-03-03 06:46:19] 2026-03-03 05:45:24,644 | INFO     | chi2: 0.07832815914104597
[2026-03-03 06:46:19] 2026-03-03 05:45:24,644 | INFO     | current memory leak: 0.52 B/s (using 503 data points, chi2=0.08)
[2026-03-03 06:46:19] 2026-03-03 05:45:24,645 | INFO     | could have reported an average CPU frequency of 1999 MHz (22 samples)
[2026-03-03 06:46:19] 2026-03-03 05:45:24,645 | INFO     | ..............................
[2026-03-03 06:46:19] 2026-03-03 05:45:24,645 | INFO     | . Timing measurements:
[2026-03-03 06:46:19] 2026-03-03 05:45:24,646 | INFO     | . get job = 0 s
[2026-03-03 06:46:19] 2026-03-03 05:45:24,646 | INFO     | . initial setup = 124 s
[2026-03-03 06:46:19] 2026-03-03 05:45:24,646 | INFO     | . payload setup = 148 s
[2026-03-03 06:46:19] 2026-03-03 05:45:24,646 | INFO     | . stage-in = 0 s
[2026-03-03 06:46:19] 2026-03-03 05:45:24,646 | INFO     | . payload execution = 32961 s
[2026-03-03 06:46:19] 2026-03-03 05:45:24,646 | INFO     | . stage-out = 4 s
[2026-03-03 06:46:19] 2026-03-03 05:45:24,646 | INFO     | . log creation = 1 s
[2026-03-03 06:46:19] 2026-03-03 05:45:24,646 | INFO     | ..............................
[2026-03-03 06:46:19] 2026-03-03 05:45:24,792 | INFO     | 
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | job summary report
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | --------------------------------------------------
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | PanDA job id: 7035796871
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | task id: 48845306
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | errors: (none)
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | pilot state: finished 
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | transexitcode: 0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,793 | INFO     | exeerrorcode: 0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | exeerrordiag: 
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | exitcode: 0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | exitmsg: OK
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | cpuconsumptiontime: 127762 s
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | nevents: 400
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | neventsw: 0
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | pid: 24509
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | pgrp: 24509
[2026-03-03 06:46:19] 2026-03-03 05:45:24,794 | INFO     | corecount: 8
[2026-03-03 06:46:19] 2026-03-03 05:45:24,795 | INFO     | event service: False
[2026-03-03 06:46:19] 2026-03-03 05:45:24,795 | INFO     | sizes: {0: 2281969, 1: 2245919, 2: 2282430, 12: 2282458, 33114: 2321451, 33119: 2330449, 33120: 2330633, 33123: 2330827}
[2026-03-03 06:46:19] 2026-03-03 05:45:24,795 | INFO     | --------------------------------------------------
[2026-03-03 06:46:19] 2026-03-03 05:45:24,795 | INFO     | 
[2026-03-03 06:46:19] 2026-03-03 05:45:24,795 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-03 06:46:19] 2026-03-03 05:45:25,413 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,413 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,413 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,413 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,415 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 06:46:19] 2026-03-03 05:45:25,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,415 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 06:46:19] 2026-03-03 05:45:25,416 | INFO     | job 7035796871 has completed (purged errors)
[2026-03-03 06:46:19] 2026-03-03 05:45:25,416 | INFO     | overall cleanup function is called
[2026-03-03 06:46:19] 2026-03-03 05:45:26,429 | INFO     | --- collectZombieJob: --- 10, [24509]
[2026-03-03 06:46:19] 2026-03-03 05:45:26,430 | INFO     | zombie collector waiting for pid 24509
[2026-03-03 06:46:19] 2026-03-03 05:45:26,430 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 06:46:19] 2026-03-03 05:45:26,430 | INFO     | collected zombie processes
[2026-03-03 06:46:19] 2026-03-03 05:45:26,430 | INFO     | will attempt to kill all subprocesses of pid=24509
[2026-03-03 06:46:19] 2026-03-03 05:45:26,537 | INFO     | process IDs to be killed: [24509] (in reverse order)
[2026-03-03 06:46:19] 2026-03-03 05:45:27,342 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 06:46:19] 2026-03-03 05:45:27,343 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 06:46:19] 2026-03-03 05:45:27,345 | INFO     | did not find any defunct processes belonging to 24509
[2026-03-03 06:46:19] 2026-03-03 05:45:27,346 | INFO     | did not find any defunct processes belonging to 24509
[2026-03-03 06:46:19] 2026-03-03 05:45:27,347 | INFO     | ready for new job
[2026-03-03 06:46:19] 2026-03-03 05:45:27,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 06:46:19] 2026-03-03 05:45:27,350 | INFO     | **************************************
[2026-03-03 06:46:19] 2026-03-03 05:45:27,350 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 06:46:19] 2026-03-03 05:45:27,350 | INFO     | **************************************
[2026-03-03 06:46:19] 2026-03-03 05:45:27,350 | INFO     | 
[2026-03-03 06:46:19] 2026-03-03 05:45:27,351 | INFO     | pilot is running in a VM
[2026-03-03 06:46:19] 2026-03-03 05:45:27,351 | INFO     | architecture information:
[2026-03-03 06:46:19] 2026-03-03 05:45:27,358 | INFO     | executing command: cat /etc/os-release
[2026-03-03 06:46:19] 2026-03-03 05:45:27,635 | INFO     | cat /etc/os-release:
[2026-03-03 06:46:19] NAME="CentOS Linux"
[2026-03-03 06:46:19] VERSION="7 (Core)"
[2026-03-03 06:46:19] ID="centos"
[2026-03-03 06:46:19] ID_LIKE="rhel fedora"
[2026-03-03 06:46:19] VERSION_ID="7"
[2026-03-03 06:46:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 06:46:19] ANSI_COLOR="0;31"
[2026-03-03 06:46:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 06:46:19] HOME_URL="https://www.centos.org/"
[2026-03-03 06:46:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 06:46:19] 
[2026-03-03 06:46:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 06:46:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 06:46:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 06:46:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 06:46:19] 
[2026-03-03 06:46:19] 2026-03-03 05:45:27,635 | INFO     | **************************************
[2026-03-03 06:46:19] 2026-03-03 05:45:28,139 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-03 06:46:19] 2026-03-03 05:45:28,386 | INFO     | sufficient remaining disk space (495784558592 B)
[2026-03-03 06:46:19] 2026-03-03 05:45:28,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 06:46:19] 2026-03-03 05:45:28,387 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 06:46:19] 2026-03-03 05:45:28,387 | INFO     | update_server=False
[2026-03-03 06:46:19] 2026-03-03 05:45:28,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 06:46:19] 2026-03-03 05:45:28,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 06:46:19] 2026-03-03 05:45:28,714 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-03 06:46:19] 2026-03-03 05:45:28,715 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-03 06:46:19] 2026-03-03 05:45:28,715 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 06:46:19] 2026-03-03 05:45:28,715 | INFO     | will abort loop
[2026-03-03 06:46:19] 2026-03-03 05:45:28,850 | INFO     | all payload control threads have been joined
[2026-03-03 06:46:19] 2026-03-03 05:45:29,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 06:46:19] 2026-03-03 05:45:29,379 | INFO     | all data control threads have been joined
[2026-03-03 06:46:19] 2026-03-03 05:45:29,392 | INFO     | [job] retrieve thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:29,501 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:29,654 | INFO     | all job control threads have been joined
[2026-03-03 06:46:19] 2026-03-03 05:45:29,720 | INFO     | [job] job monitor thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:29,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 06:46:19] 2026-03-03 05:45:29,851 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:29,856 | INFO     | [payload] control thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:30,029 | INFO     | [job] validate thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:30,173 | INFO     | [payload] validate_post thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:30,268 | INFO     | [payload] failed_post thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:30,385 | INFO     | [data] control thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:30,437 | INFO     | [data] copytool_in thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:30,511 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:30,660 | INFO     | [job] control thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:30,812 | INFO     | [job] queue monitor thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:31,198 | INFO     | [data] copytool_out thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:32,397 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:38,899 | INFO     | job.realtimelogging is not enabled
[2026-03-03 06:46:19] 2026-03-03 05:45:39,905 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 06:46:19] 2026-03-03 05:45:57,629 | INFO     | PID=20078 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-03 06:46:19] 2026-03-03 05:45:57,629 | INFO     | .. there are 2 such processes running
[2026-03-03 06:46:19] 2026-03-03 05:45:57,630 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 06:46:19] 2026-03-03 05:45:57,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 06:46:19] 2026-03-03 05:45:57,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 06:46:19] 2026-03-03 05:46:06,495 | INFO     | [monitor] cgroup control has ended
[2026-03-03 06:46:19] 2026-03-03 05:46:08,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139750746416960)>', '<ExcThread(monitor, started 139750174353152)>']
[2026-03-03 06:46:19] 2026-03-03 05:46:08,696 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 06:46:19] 2026-03-03 05:46:08,697 | INFO     | [monitor] control thread has ended
[2026-03-03 06:46:19] 2026-03-03 05:46:13,478 | INFO     | all workflow threads have been joined
[2026-03-03 06:46:19] 2026-03-03 05:46:13,479 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 06:46:19] 2026-03-03 05:46:13,479 | INFO     | traces error code: 0
[2026-03-03 06:46:19] 2026-03-03 05:46:13,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 06:46:19] 2026-03-03 05:46:13,930 [wrapper] ==== pilot stdout END ====
[2026-03-03 06:46:19] 2026-03-03 05:46:14,038 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 06:46:19] 2026-03-03 05:46:14,162 [wrapper] pilotpid: 20078
[2026-03-03 06:46:19] 2026-03-03 05:46:14,292 [wrapper] Pilot exit status: 0
[2026-03-03 06:46:19] 2026-03-03 05:46:14,866 [wrapper] pandaids: 7035796871
[2026-03-03 06:46:19] 2026-03-03 05:46:15,861 [wrapper] cleanup supervisor_pilot 32476 20079
[2026-03-03 06:46:19] 2026-03-03 05:46:15,949 [wrapper] Test setup, not cleaning
[2026-03-03 06:46:19] 2026-03-03 05:46:16,054 [wrapper] apfmon messages muted
[2026-03-03 06:46:19] 2026-03-03 05:46:16,147 [wrapper] ==== wrapper stdout END ====
[2026-03-03 06:46:19] 2026-03-03 05:46:16,248 [wrapper] ==== wrapper stderr END ====
[2026-03-03 06:46:19]  *** Error codes and diagnostics ***
[2026-03-03 06:46:19]     "exeErrorCode": 0,
[2026-03-03 06:46:19]     "exeErrorDiag": "",
[2026-03-03 06:46:19]     "pilotErrorCode": 0,
[2026-03-03 06:46:19]     "pilotErrorDiag": "",
[2026-03-03 06:46:19]  *** Listing of results directory ***
[2026-03-03 06:46:19] total 599724
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc    584627 Mar  2 03:17 pilot3.tar.gz
[2026-03-03 06:46:19] -rwx------. 1 boinc boinc     36322 Mar  2 03:30 runpilot2-wrapper.sh
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc      5111 Mar  2 03:31 queuedata.json
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc       100 Mar  2 21:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 06:46:19] -rwxr-xr-x. 1 boinc boinc      7986 Mar  2 21:26 run_atlas
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc       105 Mar  2 21:26 job.xml
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc      6390 Mar  2 21:26 init_data.xml
[2026-03-03 06:46:19] -rw-r--r--. 2 boinc boinc 300950027 Mar  2 21:26 EVNT.48449863._000003.pool.root.1
[2026-03-03 06:46:19] -rw-r--r--. 2 boinc boinc     15845 Mar  2 21:26 start_atlas.sh
[2026-03-03 06:46:19] drwxrwx--x. 2 boinc boinc        68 Mar  2 21:26 shared
[2026-03-03 06:46:19] -rw-r--r--. 2 boinc boinc    597987 Mar  2 21:26 input.tar.gz
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc         0 Mar  2 21:26 boinc_lockfile
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc      2676 Mar  2 21:26 pandaJob.out
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc       415 Mar  2 21:33 workernode_map.json
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc    998454 Mar  2 21:33 agis_schedconf.cvmfs.json
[2026-03-03 06:46:19] drwx------. 5 boinc boinc      4096 Mar  2 21:33 pilot3
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc 298575337 Mar  3 06:43 HITS.48845306._000070.pool.root.1
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc       532 Mar  3 06:43 boinc_task_state.xml
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc      1014 Mar  3 06:45 memory_monitor_summary.json
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc   1512931 Mar  3 06:45 agis_ddmendpoints.agis.ALL.json
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc    734455 Mar  3 06:45 log.48845306._000070.job.log.tgz.1
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc      6312 Mar  3 06:45 heartbeat.json
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc        95 Mar  3 06:45 pilot_heartbeat.json
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc      8192 Mar  3 06:46 boinc_mmap_file
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc        29 Mar  3 06:46 wrapper_checkpoint.txt
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc      5138 Mar  3 06:46 pilotlog.txt
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc   4598520 Mar  3 06:46 log.48845306._000070.job.log.1
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc       357 Mar  3 06:46 output.list
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc       620 Mar  3 06:46 runtime_log
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc   5355520 Mar  3 06:46 result.tar.gz
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc       658 Mar  3 06:46 unVMDm4D8G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmFXALDmqw7P9n.diag
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc      8816 Mar  3 06:46 runtime_log.err
[2026-03-03 06:46:19] -rw-r--r--. 1 boinc boinc     20724 Mar  3 06:46 stderr.txt
[2026-03-03 06:46:19] HITS file was successfully produced:
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc 298575337 Mar  3 06:43 shared/HITS.pool.root.1
[2026-03-03 06:46:19]  *** Contents of shared directory: ***
[2026-03-03 06:46:19] total 591312
[2026-03-03 06:46:19] -rw-r--r--. 2 boinc boinc 300950027 Mar  2 21:26 ATLAS.root_0
[2026-03-03 06:46:19] -rw-r--r--. 2 boinc boinc     15845 Mar  2 21:26 start_atlas.sh
[2026-03-03 06:46:19] -rw-r--r--. 2 boinc boinc    597987 Mar  2 21:26 input.tar.gz
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc 298575337 Mar  3 06:43 HITS.pool.root.1
[2026-03-03 06:46:19] -rw-------. 1 boinc boinc   5355520 Mar  3 06:46 result.tar.gz
06:46:21 (16104): run_atlas exited; CPU time 128142.433686
06:46:21 (16104): called boinc_finish(0)

</stderr_txt>
]]>

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