Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:24:52 (730559): wrapper (7.7.26015): starting
10:24:52 (730559): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 10:24:52] Arguments: --nthreads 3
[2026-03-02 10:24:52] Threads: 3
[2026-03-02 10:24:52] Checking for CVMFS
[2026-03-02 10:24:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 10:24:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 10:24:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 10:24:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 10:24:52] 2.9.2.0 2927 5310 80260 156801 1 49 5676007 36864001 0 130560 0 2048574 99.981 199080 13051 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 10:24:52] CVMFS is ok
[2026-03-02 10:24:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 10:24:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 10:24:52] Further information can be found at the LHC@home message board.
[2026-03-02 10:24:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 10:24:52] Checking for apptainer binary...
[2026-03-02 10:24:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 10:24:52] Running /usr/bin/apptainer --version
[2026-03-02 10:24:52] apptainer version 1.4.1-1.1
[2026-03-02 10:24:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 10:24:52] belleA259
[2026-03-02 10:24:52] apptainer works
[2026-03-02 10:24:52] Set ATHENA_PROC_NUMBER=3
[2026-03-02 10:24:52] Set ATHENA_CORE_NUMBER=3
[2026-03-02 10:24:52] Starting ATLAS job with PandaID=7035824554
[2026-03-02 10:24:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 12:35:18]  *** The last 200 lines of the pilot log: ***
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | job 7035824554 has completed (purged errors)
[2026-03-02 12:35:18] 2026-03-02 11:34:28,628 | INFO     | overall cleanup function is called
[2026-03-02 12:35:18] 2026-03-02 11:34:29,633 | INFO     | --- collectZombieJob: --- 10, [739036]
[2026-03-02 12:35:18] 2026-03-02 11:34:29,633 | INFO     | zombie collector waiting for pid 739036
[2026-03-02 12:35:18] 2026-03-02 11:34:29,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 12:35:18] 2026-03-02 11:34:29,633 | INFO     | collected zombie processes
[2026-03-02 12:35:18] 2026-03-02 11:34:29,633 | INFO     | will attempt to kill all subprocesses of pid=739036
[2026-03-02 12:35:18] 2026-03-02 11:34:29,675 | INFO     | process IDs to be killed: [739036] (in reverse order)
[2026-03-02 12:35:18] 2026-03-02 11:34:29,700 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 12:35:18] 2026-03-02 11:34:29,700 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 12:35:18] 2026-03-02 11:34:29,701 | INFO     | did not find any defunct processes belonging to 739036
[2026-03-02 12:35:18] 2026-03-02 11:34:29,702 | INFO     | did not find any defunct processes belonging to 739036
[2026-03-02 12:35:18] 2026-03-02 11:34:29,703 | INFO     | ready for new job
[2026-03-02 12:35:18] 2026-03-02 11:34:29,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 12:35:18] 2026-03-02 11:34:29,703 | INFO     | **************************************
[2026-03-02 12:35:18] 2026-03-02 11:34:29,703 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 12:35:18] 2026-03-02 11:34:29,703 | INFO     | **************************************
[2026-03-02 12:35:18] 2026-03-02 11:34:29,703 | INFO     | 
[2026-03-02 12:35:18] 2026-03-02 11:34:29,704 | INFO     | architecture information:
[2026-03-02 12:35:18] 2026-03-02 11:34:29,704 | INFO     | executing command: cat /etc/os-release
[2026-03-02 12:35:18] 2026-03-02 11:34:29,713 | INFO     | cat /etc/os-release:
[2026-03-02 12:35:18] NAME="CentOS Linux"
[2026-03-02 12:35:18] VERSION="7 (Core)"
[2026-03-02 12:35:18] ID="centos"
[2026-03-02 12:35:18] ID_LIKE="rhel fedora"
[2026-03-02 12:35:18] VERSION_ID="7"
[2026-03-02 12:35:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 12:35:18] ANSI_COLOR="0;31"
[2026-03-02 12:35:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 12:35:18] HOME_URL="https://www.centos.org/"
[2026-03-02 12:35:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 12:35:18] 
[2026-03-02 12:35:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 12:35:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 12:35:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 12:35:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 12:35:18] 
[2026-03-02 12:35:18] 2026-03-02 11:34:29,713 | INFO     | **************************************
[2026-03-02 12:35:18] 2026-03-02 11:34:30,217 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 12:35:18] 2026-03-02 11:34:30,231 | INFO     | sufficient remaining disk space (356263133184 B)
[2026-03-02 12:35:18] 2026-03-02 11:34:30,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 12:35:18] 2026-03-02 11:34:30,231 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 12:35:18] 2026-03-02 11:34:30,231 | INFO     | update_server=False
[2026-03-02 12:35:18] 2026-03-02 11:34:30,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 12:35:18] 2026-03-02 11:34:30,231 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 12:35:18] 2026-03-02 11:34:30,341 | INFO     | all data control threads have been joined
[2026-03-02 12:35:18] 2026-03-02 11:34:30,694 | WARNING  | process 739036 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 12:35:18] 2026-03-02 11:34:30,721 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 12:35:18] 2026-03-02 11:34:30,756 | INFO     | number of running child processes to parent process 739036: 1
[2026-03-02 12:35:18] 2026-03-02 11:34:30,756 | INFO     | maximum number of monitored processes: 6
[2026-03-02 12:35:18] 2026-03-02 11:34:30,756 | INFO     | aborting job monitoring since job object (job id=7035824554) has expired
[2026-03-02 12:35:18] 2026-03-02 11:34:30,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 12:35:18] 2026-03-02 11:34:30,756 | INFO     | will abort loop
[2026-03-02 12:35:18] 2026-03-02 11:34:30,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 12:35:18] 2026-03-02 11:34:30,847 | INFO     | all job control threads have been joined
[2026-03-02 12:35:18] 2026-03-02 11:34:31,045 | INFO     | all payload control threads have been joined
[2026-03-02 12:35:18] 2026-03-02 11:34:31,237 | INFO     | [job] retrieve thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:31,245 | INFO     | [payload] validate_post thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:31,346 | INFO     | [data] control thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:31,354 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:31,464 | INFO     | [data] copytool_in thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:31,761 | INFO     | [job] job monitor thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:31,853 | INFO     | [job] control thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:32,051 | INFO     | [payload] control thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:32,335 | INFO     | [payload] failed_post thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:32,431 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:32,628 | INFO     | [job] validate thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:32,707 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:32,807 | INFO     | [data] copytool_out thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:33,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 12:35:18] 2026-03-02 11:34:34,179 | INFO     | [job] queue monitor thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:34,238 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:34:41,032 | INFO     | job.realtimelogging is not enabled
[2026-03-02 12:35:18] 2026-03-02 11:34:42,038 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 12:35:18] 2026-03-02 11:35:01,059 | INFO     | PID=734606 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 12:35:18] 2026-03-02 11:35:01,059 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 12:35:18] 2026-03-02 11:35:01,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 12:35:18] 2026-03-02 11:35:01,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 12:35:18] 2026-03-02 11:35:11,217 | INFO     | [monitor] cgroup control has ended
[2026-03-02 12:35:18] 2026-03-02 11:35:13,252 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139905889138496)>', '<ExcThread(monitor, started 139905262937856)>']
[2026-03-02 12:35:18] 2026-03-02 11:35:14,124 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 12:35:18] 2026-03-02 11:35:14,125 | INFO     | [monitor] control thread has ended
[2026-03-02 12:35:18] 2026-03-02 11:35:18,255 | INFO     | all workflow threads have been joined
[2026-03-02 12:35:18] 2026-03-02 11:35:18,255 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 12:35:18] 2026-03-02 11:35:18,256 | INFO     | traces error code: 0
[2026-03-02 12:35:18] 2026-03-02 11:35:18,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 12:35:18] 2026-03-02 11:35:18,305 [wrapper] ==== pilot stdout END ====
[2026-03-02 12:35:18] 2026-03-02 11:35:18,308 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 12:35:18] 2026-03-02 11:35:18,310 [wrapper] pilotpid: 734606
[2026-03-02 12:35:18] 2026-03-02 11:35:18,313 [wrapper] Pilot exit status: 0
[2026-03-02 12:35:18] 2026-03-02 11:35:18,321 [wrapper] pandaids: 7035824554
[2026-03-02 12:35:18] 2026-03-02 11:35:18,338 [wrapper] cleanup supervisor_pilot  744930 734607
[2026-03-02 12:35:18] 2026-03-02 11:35:18,340 [wrapper] Test setup, not cleaning
[2026-03-02 12:35:18] 2026-03-02 11:35:18,343 [wrapper] apfmon messages muted
[2026-03-02 12:35:18] 2026-03-02 11:35:18,345 [wrapper] ==== wrapper stdout END ====
[2026-03-02 12:35:18] 2026-03-02 11:35:18,348 [wrapper] ==== wrapper stderr END ====
[2026-03-02 12:35:18]  *** Error codes and diagnostics ***
[2026-03-02 12:35:18]     "exeErrorCode": 0,
[2026-03-02 12:35:18]     "exeErrorDiag": "",
[2026-03-02 12:35:18]     "pilotErrorCode": 0,
[2026-03-02 12:35:18]     "pilotErrorDiag": "",
[2026-03-02 12:35:18]  *** Listing of results directory ***
[2026-03-02 12:35:18] total 561096
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc    584627 Mar  2 03:17 pilot3.tar.gz
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc      5111 Mar  2 03:27 queuedata.json
[2026-03-02 12:35:18] -rwx------ 1 boinc boinc     36322 Mar  2 03:28 runpilot2-wrapper.sh
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc       100 Mar  2 10:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 12:35:18] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 10:24 run_atlas
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc       105 Mar  2 10:24 job.xml
[2026-03-02 12:35:18] -rw-r--r-- 2 boinc boinc 308109571 Mar  2 10:24 EVNT.48450722._000001.pool.root.1
[2026-03-02 12:35:18] drwxrwx--x 2 boinc boinc      4096 Mar  2 10:24 shared
[2026-03-02 12:35:18] -rw-r--r-- 2 boinc boinc    597955 Mar  2 10:24 input.tar.gz
[2026-03-02 12:35:18] -rw-r--r-- 2 boinc boinc     15845 Mar  2 10:24 start_atlas.sh
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc         0 Mar  2 10:24 boinc_setup_complete
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc      6445 Mar  2 10:24 init_data.xml
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc         0 Mar  2 10:24 boinc_lockfile
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc      2601 Mar  2 10:24 pandaJob.out
[2026-03-02 12:35:18] -rw------- 1 boinc boinc    997501 Mar  2 10:24 agis_schedconf.cvmfs.json
[2026-03-02 12:35:18] -rw------- 1 boinc boinc   1513015 Mar  2 10:24 agis_ddmendpoints.agis.ALL.json
[2026-03-02 12:35:18] -rw------- 1 boinc boinc       426 Mar  2 10:25 workernode_map.json
[2026-03-02 12:35:18] drwx------ 5 boinc boinc      4096 Mar  2 10:25 pilot3
[2026-03-02 12:35:18] -rw------- 1 boinc boinc 259686150 Mar  2 12:34 HITS.48845809._000024.pool.root.1
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc       529 Mar  2 12:34 boinc_task_state.xml
[2026-03-02 12:35:18] -rw------- 1 boinc boinc      1015 Mar  2 12:34 memory_monitor_summary.json
[2026-03-02 12:35:18] -rw------- 1 boinc boinc    310361 Mar  2 12:34 log.48845809._000024.job.log.tgz.1
[2026-03-02 12:35:18] -rw------- 1 boinc boinc      6306 Mar  2 12:34 heartbeat.json
[2026-03-02 12:35:18] -rw------- 1 boinc boinc        95 Mar  2 12:35 pilot_heartbeat.json
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc      8192 Mar  2 12:35 boinc_mmap_file
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc        27 Mar  2 12:35 wrapper_checkpoint.txt
[2026-03-02 12:35:18] -rw------- 1 boinc boinc      5341 Mar  2 12:35 pilotlog.txt
[2026-03-02 12:35:18] -rw------- 1 boinc boinc   1112796 Mar  2 12:35 log.48845809._000024.job.log.1
[2026-03-02 12:35:18] -rw------- 1 boinc boinc       357 Mar  2 12:35 output.list
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc       620 Mar  2 12:35 runtime_log
[2026-03-02 12:35:18] -rw------- 1 boinc boinc   1443840 Mar  2 12:35 result.tar.gz
[2026-03-02 12:35:18] -rw------- 1 boinc boinc       660 Mar  2 12:35 ujaKDmFC8G9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVRCLDmLQH2Ao.diag
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc      8911 Mar  2 12:35 runtime_log.err
[2026-03-02 12:35:18] -rw-r--r-- 1 boinc boinc     12646 Mar  2 12:35 stderr.txt
[2026-03-02 12:35:18] HITS file was successfully produced:
[2026-03-02 12:35:18] -rw------- 1 boinc boinc 259686150 Mar  2 12:34 shared/HITS.pool.root.1
[2026-03-02 12:35:18]  *** Contents of shared directory: ***
[2026-03-02 12:35:18] total 556508
[2026-03-02 12:35:18] -rw-r--r-- 2 boinc boinc 308109571 Mar  2 10:24 ATLAS.root_0
[2026-03-02 12:35:18] -rw-r--r-- 2 boinc boinc    597955 Mar  2 10:24 input.tar.gz
[2026-03-02 12:35:18] -rw-r--r-- 2 boinc boinc     15845 Mar  2 10:24 start_atlas.sh
[2026-03-02 12:35:18] -rw------- 1 boinc boinc 259686150 Mar  2 12:34 HITS.pool.root.1
[2026-03-02 12:35:18] -rw------- 1 boinc boinc   1443840 Mar  2 12:35 result.tar.gz
12:35:40 (730559): run_atlas exited; CPU time 22591.423513
12:35:40 (730559): called boinc_finish(0)

</stderr_txt>
]]>

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