Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:05 (108563): wrapper (7.7.26015): starting
00:01:05 (108563): wrapper: running run_atlas (--nthreads 8)
[2026-03-02 00:01:05] Arguments: --nthreads 8
[2026-03-02 00:01:05] Threads: 8
[2026-03-02 00:01:05] Checking for CVMFS
[2026-03-02 00:01:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 00:01:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 00:01:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 00:01:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 00:01:10] 2.13.3.0 10228 98490 225880 156795 0 345 28285311 32935936 27095 16776704 0 436390362 99.773 285605493 33277 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-02 00:01:10] CVMFS is ok
[2026-03-02 00:01:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 00:01:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 00:01:10] Further information can be found at the LHC@home message board.
[2026-03-02 00:01:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 00:01:10] Checking for apptainer binary...
[2026-03-02 00:01:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 00:01:10] Running /usr/bin/apptainer --version
[2026-03-02 00:01:10] apptainer version 1.4.5-2.el9
[2026-03-02 00:01:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 00:01:11] c-8-1.aglt2.org
[2026-03-02 00:01:11] apptainer works
[2026-03-02 00:01:11] Set ATHENA_PROC_NUMBER=8
[2026-03-02 00:01:11] Set ATHENA_CORE_NUMBER=8
[2026-03-02 00:01:11] Starting ATLAS job with PandaID=7035717482
[2026-03-02 00:01:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 20:42:29]  *** The last 200 lines of the pilot log: ***
[2026-03-02 20:42:29] 2026-03-03 01:41:53,851 | INFO     | total number of processed events: 400 (read)
[2026-03-02 20:42:29] 2026-03-03 01:41:53,862 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7035717482/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 20:42:29] 2026-03-03 01:41:53,862 | INFO     | extracted standard info from prmon json
[2026-03-02 20:42:29] 2026-03-03 01:41:53,863 | INFO     | extracted standard memory fields from prmon json
[2026-03-02 20:42:29] 2026-03-03 01:41:53,863 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-02 20:42:29] 2026-03-03 01:41:53,863 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-02 20:42:29] 2026-03-03 01:41:53,870 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-02 20:42:29] 2026-03-03 01:41:53,918 | INFO     | fitting pss+swap vs Time
[2026-03-02 20:42:29] 2026-03-03 01:41:53,920 | INFO     | sum of square deviations: 557463356303.7369
[2026-03-02 20:42:29] 2026-03-03 01:41:54,028 | INFO     | sum of deviations: 1333197258778.8882
[2026-03-02 20:42:29] 2026-03-03 01:41:54,028 | INFO     | mean x: 1772465002.6907895
[2026-03-02 20:42:29] 2026-03-03 01:41:54,028 | INFO     | mean y: 2514445.6060855263
[2026-03-02 20:42:29] 2026-03-03 01:41:54,029 | INFO     | intersect: -4236410779.070668
[2026-03-02 20:42:29] 2026-03-03 01:41:54,030 | INFO     | chi2: 5.1149800475682925
[2026-03-02 20:42:29] 2026-03-03 01:41:54,036 | INFO     | sum of square deviations: 550614886884.2351
[2026-03-02 20:42:29] 2026-03-03 01:41:54,075 | INFO     | sum of deviations: 1401883780250.5803
[2026-03-02 20:42:29] 2026-03-03 01:41:54,075 | INFO     | mean x: 1772464850.2006607
[2026-03-02 20:42:29] 2026-03-03 01:41:54,075 | INFO     | mean y: 2515969.2774566473
[2026-03-02 20:42:29] 2026-03-03 01:41:54,075 | INFO     | intersect: -4510238378.178099
[2026-03-02 20:42:29] 2026-03-03 01:41:54,077 | INFO     | chi2: 4.4273740353120195
[2026-03-02 20:42:29] 2026-03-03 01:41:54,077 | INFO     | current chi2=4.4273740353120195 (change=13.442985228909487 %)
[2026-03-02 20:42:29] 2026-03-03 01:41:54,077 | INFO     | right removable region: 1210
[2026-03-02 20:42:29] 2026-03-03 01:41:54,079 | INFO     | sum of square deviations: 550612890460.0283
[2026-03-02 20:42:29] 2026-03-03 01:41:54,115 | INFO     | sum of deviations: 964019269292.931
[2026-03-02 20:42:29] 2026-03-03 01:41:54,115 | INFO     | mean x: 1772465155.2031379
[2026-03-02 20:42:29] 2026-03-03 01:41:54,115 | INFO     | mean y: 2522661.386457473
[2026-03-02 20:42:29] 2026-03-03 01:41:54,115 | INFO     | intersect: -3100729357.175125
[2026-03-02 20:42:29] 2026-03-03 01:41:54,117 | INFO     | chi2: 1.880120443502068
[2026-03-02 20:42:29] 2026-03-03 01:41:54,117 | INFO     | current chi2=1.880120443502068 (change=63.24285870096612 %)
[2026-03-02 20:42:29] 2026-03-03 01:41:54,119 | INFO     | sum of square deviations: 543818899616.30597
[2026-03-02 20:42:29] 2026-03-03 01:41:54,165 | INFO     | sum of deviations: 808005689700.0696
[2026-03-02 20:42:29] 2026-03-03 01:41:54,166 | INFO     | mean x: 1772465307.7139304
[2026-03-02 20:42:29] 2026-03-03 01:41:54,166 | INFO     | mean y: 2526161.1625207295
[2026-03-02 20:42:29] 2026-03-03 01:41:54,166 | INFO     | intersect: -2631001387.1431913
[2026-03-02 20:42:29] 2026-03-03 01:41:54,168 | INFO     | chi2: 1.3085182656274603
[2026-03-02 20:42:29] 2026-03-03 01:41:54,168 | INFO     | current chi2=1.3085182656274603 (change=30.40242341123073 %)
[2026-03-02 20:42:29] 2026-03-03 01:41:54,169 | INFO     | sum of square deviations: 537081075684.74976
[2026-03-02 20:42:29] 2026-03-03 01:41:54,206 | INFO     | sum of deviations: 735706033114.9161
[2026-03-02 20:42:29] 2026-03-03 01:41:54,207 | INFO     | mean x: 1772465460.22398
[2026-03-02 20:42:29] 2026-03-03 01:41:54,207 | INFO     | mean y: 2527797.461282265
[2026-03-02 20:42:29] 2026-03-03 01:41:54,207 | INFO     | intersect: -2425436231.82804
[2026-03-02 20:42:29] 2026-03-03 01:41:54,209 | INFO     | chi2: 1.2102647040999954
[2026-03-02 20:42:29] 2026-03-03 01:41:54,209 | INFO     | current chi2=1.2102647040999954 (change=7.508764998427467 %)
[2026-03-02 20:42:29] 2026-03-03 01:41:54,209 | INFO     | left removable region: 30
[2026-03-02 20:42:29] 2026-03-03 01:41:54,211 | INFO     | sum of square deviations: 509393444514.7082
[2026-03-02 20:42:29] 2026-03-03 01:41:54,257 | INFO     | sum of deviations: 585266537458.1422
[2026-03-02 20:42:29] 2026-03-03 01:41:54,257 | INFO     | mean x: 1772465734.744068
[2026-03-02 20:42:29] 2026-03-03 01:41:54,257 | INFO     | mean y: 2534468.0203389833
[2026-03-02 20:42:29] 2026-03-03 01:41:54,257 | INFO     | intersect: -2033936347.4318407
[2026-03-02 20:42:29] 2026-03-03 01:41:54,259 | INFO     | chi2: 0.20522401338125895
[2026-03-02 20:42:29] 2026-03-03 01:41:54,259 | INFO     | current memory leak: 1.15 B/s (using 1180 data points, chi2=0.21)
[2026-03-02 20:42:29] 2026-03-03 01:41:54,260 | INFO     | could have reported an average CPU frequency of 2600 MHz (44 samples)
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | ..............................
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | . Timing measurements:
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | . get job = 3 s
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | . initial setup = 65 s
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | . payload setup = 52 s
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | . stage-in = 1 s
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | . payload execution = 74214 s
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | . stage-out = 4 s
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | . log creation = 1 s
[2026-03-02 20:42:29] 2026-03-03 01:41:54,261 | INFO     | ..............................
[2026-03-02 20:42:29] 2026-03-03 01:41:54,999 | INFO     | 
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | job summary report
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | --------------------------------------------------
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | PanDA job id: 7035717482
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | task id: 48838416
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | errors: (none)
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | pilot state: finished 
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | transexitcode: 0
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | exeerrorcode: 0
[2026-03-02 20:42:29] 2026-03-03 01:41:55,000 | INFO     | exeerrordiag: 
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | exitcode: 0
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | exitmsg: OK
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | cpuconsumptiontime: 58668 s
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | nevents: 400
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | neventsw: 0
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | pid: 146087
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | pgrp: 146087
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | corecount: 8
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | event service: False
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | sizes: {0: 2281189, 2: 2281790, 4: 2281874, 5: 2281958, 6: 2281958, 7: 2281958, 9: 2282547, 20: 2282547, 74271: 2337588, 74275: 2346586, 74279: 2346642, 74282: 234
[2026-03-02 20:42:29] 2026-03-03 01:41:55,001 | INFO     | --------------------------------------------------
[2026-03-02 20:42:29] 2026-03-03 01:41:55,002 | INFO     | 
[2026-03-02 20:42:29] 2026-03-03 01:41:55,002 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-03-02 20:42:29] 2026-03-03 01:41:55,158 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,158 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,158 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,158 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,158 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,159 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,160 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,160 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,160 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,160 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 20:42:29] 2026-03-03 01:41:55,160 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,160 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 20:42:29] 2026-03-03 01:41:55,160 | INFO     | job 7035717482 has completed (purged errors)
[2026-03-02 20:42:29] 2026-03-03 01:41:55,160 | INFO     | overall cleanup function is called
[2026-03-02 20:42:29] 2026-03-03 01:41:55,594 | INFO     | PID=123158 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-02 20:42:29] 2026-03-03 01:41:55,599 | INFO     | .. there are 41 such processes running
[2026-03-02 20:42:29] 2026-03-03 01:41:56,177 | INFO     | --- collectZombieJob: --- 10, [146087]
[2026-03-02 20:42:29] 2026-03-03 01:41:56,178 | INFO     | zombie collector waiting for pid 146087
[2026-03-02 20:42:29] 2026-03-03 01:41:56,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 20:42:29] 2026-03-03 01:41:56,178 | INFO     | collected zombie processes
[2026-03-02 20:42:29] 2026-03-03 01:41:56,178 | INFO     | will attempt to kill all subprocesses of pid=146087
[2026-03-02 20:42:29] 2026-03-03 01:41:56,889 | INFO     | process IDs to be killed: [146087] (in reverse order)
[2026-03-02 20:42:29] 2026-03-03 01:41:57,065 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 20:42:29] 2026-03-03 01:41:57,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 20:42:29] 2026-03-03 01:41:57,083 | INFO     | did not find any defunct processes belonging to 146087
[2026-03-02 20:42:29] 2026-03-03 01:41:57,117 | INFO     | did not find any defunct processes belonging to 146087
[2026-03-02 20:42:29] 2026-03-03 01:41:57,117 | INFO     | ready for new job
[2026-03-02 20:42:29] 2026-03-03 01:41:57,117 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 20:42:29] 2026-03-03 01:41:57,125 | INFO     | **************************************
[2026-03-02 20:42:29] 2026-03-03 01:41:57,126 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 20:42:29] 2026-03-03 01:41:57,126 | INFO     | **************************************
[2026-03-02 20:42:29] 2026-03-03 01:41:57,126 | INFO     | 
[2026-03-02 20:42:29] 2026-03-03 01:41:57,132 | INFO     | architecture information:
[2026-03-02 20:42:29] 2026-03-03 01:41:57,144 | INFO     | executing command: cat /etc/os-release
[2026-03-02 20:42:29] 2026-03-03 01:41:57,240 | INFO     | cat /etc/os-release:
[2026-03-02 20:42:29] NAME="CentOS Linux"
[2026-03-02 20:42:29] VERSION="7 (Core)"
[2026-03-02 20:42:29] ID="centos"
[2026-03-02 20:42:29] ID_LIKE="rhel fedora"
[2026-03-02 20:42:29] VERSION_ID="7"
[2026-03-02 20:42:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 20:42:29] ANSI_COLOR="0;31"
[2026-03-02 20:42:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 20:42:29] HOME_URL="https://www.centos.org/"
[2026-03-02 20:42:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 20:42:29] 
[2026-03-02 20:42:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 20:42:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 20:42:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 20:42:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 20:42:29] 
[2026-03-02 20:42:29] 2026-03-03 01:41:57,240 | INFO     | **************************************
[2026-03-02 20:42:29] 2026-03-03 01:41:57,747 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-03-02 20:42:29] 2026-03-03 01:41:57,829 | INFO     | sufficient remaining disk space (75507957760 B)
[2026-03-02 20:42:29] 2026-03-03 01:41:57,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 20:42:29] 2026-03-03 01:41:57,829 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 20:42:29] 2026-03-03 01:41:57,830 | INFO     | update_server=False
[2026-03-02 20:42:29] 2026-03-03 01:41:57,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 20:42:29] 2026-03-03 01:41:57,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 20:42:29] 2026-03-03 01:41:57,834 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 20:42:29] 2026-03-03 01:41:57,835 | INFO     | aborting loop
[2026-03-02 20:42:29] 2026-03-03 01:41:58,392 | INFO     | all job control threads have been joined
[2026-03-02 20:42:29] 2026-03-03 01:41:58,465 | INFO     | all data control threads have been joined
[2026-03-02 20:42:29] 2026-03-03 01:41:58,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 20:42:29] 2026-03-03 01:41:58,835 | INFO     | [job] retrieve thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:58,840 | INFO     | [job] job monitor thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:59,002 | INFO     | all payload control threads have been joined
[2026-03-02 20:42:29] 2026-03-03 01:41:59,253 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:59,254 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:59,398 | INFO     | [job] control thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:59,471 | INFO     | [data] control thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:59,487 | INFO     | [payload] validate_post thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:59,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 20:42:29] 2026-03-03 01:41:59,777 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:59,918 | INFO     | [data] copytool_in thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:41:59,992 | INFO     | [job] validate thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:42:00,009 | INFO     | [payload] control thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:42:00,175 | INFO     | [payload] failed_post thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:42:00,568 | INFO     | [job] queue monitor thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:42:00,632 | INFO     | [data] copytool_out thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:42:01,843 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:42:08,242 | INFO     | job.realtimelogging is not enabled
[2026-03-02 20:42:29] 2026-03-03 01:42:09,251 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 20:42:29] 2026-03-03 01:42:20,693 | INFO     | [monitor] cgroup control has ended
[2026-03-02 20:42:29] 2026-03-03 01:42:21,700 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140549188273984)>', '<ExcThread(monitor, started 140548794980096)>']
[2026-03-02 20:42:29] 2026-03-03 01:42:26,726 | INFO     | all workflow threads have been joined
[2026-03-02 20:42:29] 2026-03-03 01:42:26,727 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 20:42:29] 2026-03-03 01:42:26,727 | INFO     | traces error code: 0
[2026-03-02 20:42:29] 2026-03-03 01:42:26,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 20:42:29] 2026-03-03 01:42:28,552 | INFO     | PID=123158 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 20:42:29] 2026-03-03 01:42:28,552 | INFO     | .. there are 41 such processes running
[2026-03-02 20:42:29] 2026-03-03 01:42:28,552 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 20:42:29] 2026-03-03 01:42:28,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 20:42:29] 2026-03-03 01:42:28,553 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 20:42:29] 2026-03-03 01:42:28,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 20:42:29] 2026-03-03 01:42:28,553 | INFO     | [monitor] control thread has ended
[2026-03-02 20:42:29] 2026-03-03 01:42:28,689 [wrapper] ==== pilot stdout END ====
[2026-03-02 20:42:29] 2026-03-03 01:42:28,700 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 20:42:29] 2026-03-03 01:42:28,767 [wrapper] pilotpid: 123158
[2026-03-02 20:42:29] 2026-03-03 01:42:28,784 [wrapper] Pilot exit status: 0
[2026-03-02 20:42:29] 2026-03-03 01:42:28,890 [wrapper] pandaids: 7035717482
[2026-03-02 20:42:29] 2026-03-03 01:42:29,195 [wrapper] cleanup supervisor_pilot 4070108 123159
[2026-03-02 20:42:29] 2026-03-03 01:42:29,199 [wrapper] Test setup, not cleaning
[2026-03-02 20:42:29] 2026-03-03 01:42:29,208 [wrapper] apfmon messages muted
[2026-03-02 20:42:29] 2026-03-03 01:42:29,221 [wrapper] ==== wrapper stdout END ====
[2026-03-02 20:42:29] 2026-03-03 01:42:29,225 [wrapper] ==== wrapper stderr END ====
[2026-03-02 20:42:29]  *** Error codes and diagnostics ***
[2026-03-02 20:42:29]     "exeErrorCode": 0,
[2026-03-02 20:42:29]     "exeErrorDiag": "",
[2026-03-02 20:42:29]     "pilotErrorCode": 0,
[2026-03-02 20:42:29]     "pilotErrorDiag": "",
[2026-03-02 20:42:29]  *** Listing of results directory ***
[2026-03-02 20:42:29] total 522048
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas    584627 Mar  1 19:56 pilot3.tar.gz
[2026-03-02 20:42:29] -rwx------. 1 boincer umatlas     36322 Mar  1 20:00 runpilot2-wrapper.sh
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas      5111 Mar  1 20:01 queuedata.json
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas       100 Mar  2 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 20:42:29] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  2 00:01 run_atlas
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas       105 Mar  2 00:01 job.xml
[2026-03-02 20:42:29] -rw-r--r--. 2 boincer umatlas 288923057 Mar  2 00:01 EVNT.48220085._000401.pool.root.1
[2026-03-02 20:42:29] -rw-r--r--. 2 boincer umatlas     15845 Mar  2 00:01 start_atlas.sh
[2026-03-02 20:42:29] drwxrwx--x. 2 boincer umatlas      4096 Mar  2 00:01 shared
[2026-03-02 20:42:29] -rw-r--r--. 2 boincer umatlas    597952 Mar  2 00:01 input.tar.gz
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas         0 Mar  2 00:01 boinc_lockfile
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas      2567 Mar  2 00:01 pandaJob.out
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas        57 Mar  2 00:01 setup.sh.local
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas       439 Mar  2 00:03 workernode_map.json
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas    998242 Mar  2 00:03 agis_schedconf.cvmfs.json
[2026-03-02 20:42:29] drwx------. 5 boincer umatlas      4096 Mar  2 00:03 pilot3
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas      6658 Mar  2 20:37 init_data.xml
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas 225022725 Mar  2 20:40 HITS.48838416._010296.pool.root.1
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas       529 Mar  2 20:40 boinc_task_state.xml
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas        95 Mar  2 20:41 pilot_heartbeat.json
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas      1044 Mar  2 20:41 memory_monitor_summary.json
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas   1512931 Mar  2 20:41 agis_ddmendpoints.agis.ALL.json
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas   1067983 Mar  2 20:41 log.48838416._010296.job.log.tgz.1
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas      6386 Mar  2 20:41 heartbeat.json
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas      8192 Mar  2 20:42 boinc_mmap_file
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas        27 Mar  2 20:42 wrapper_checkpoint.txt
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas       822 Mar  2 20:42 pilotlog.txt
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas   7282724 Mar  2 20:42 log.48838416._010296.job.log.1
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas       357 Mar  2 20:42 output.list
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas       620 Mar  2 20:42 runtime_log
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas   8366080 Mar  2 20:42 result.tar.gz
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas      9327 Mar  2 20:42 runtime_log.err
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas       654 Mar  2 20:42 KEINDmto6G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmkDALDm0U0TGo.diag
[2026-03-02 20:42:29] -rw-r--r--. 1 boincer umatlas     21253 Mar  2 20:42 stderr.txt
[2026-03-02 20:42:29] HITS file was successfully produced:
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas 225022725 Mar  2 20:40 shared/HITS.pool.root.1
[2026-03-02 20:42:29]  *** Contents of shared directory: ***
[2026-03-02 20:42:29] total 510684
[2026-03-02 20:42:29] -rw-r--r--. 2 boincer umatlas 288923057 Mar  2 00:01 ATLAS.root_0
[2026-03-02 20:42:29] -rw-r--r--. 2 boincer umatlas     15845 Mar  2 00:01 start_atlas.sh
[2026-03-02 20:42:29] -rw-r--r--. 2 boincer umatlas    597952 Mar  2 00:01 input.tar.gz
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas 225022725 Mar  2 20:40 HITS.pool.root.1
[2026-03-02 20:42:29] -rw-------. 1 boincer umatlas   8366080 Mar  2 20:42 result.tar.gz
20:42:51 (108563): run_atlas exited; CPU time 61711.278739
20:42:51 (108563): called boinc_finish(0)

</stderr_txt>
]]>

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