Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:28:54 (2739653): wrapper (7.7.26015): starting
04:28:54 (2739653): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 04:28:54] Arguments: --nthreads 4
[2026-03-03 04:28:54] Threads: 4
[2026-03-03 04:28:54] Checking for CVMFS
[2026-03-03 04:28:54] No cvmfs_config command found, will try listing directly
[2026-03-03 04:28:54] CVMFS is ok
[2026-03-03 04:28:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 04:28:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 04:28:54] Further information can be found at the LHC@home message board.
[2026-03-03 04:28:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 04:28:54] Checking for apptainer binary...
[2026-03-03 04:28:54] which: no apptainer in ((null))
[2026-03-03 04:28:54] apptainer is not installed, using version from CVMFS
[2026-03-03 04:28:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 04:28:54] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-03 04:28:54] apptainer works
[2026-03-03 04:28:54] Set ATHENA_PROC_NUMBER=4
[2026-03-03 04:28:54] Set ATHENA_CORE_NUMBER=4
[2026-03-03 04:28:54] Starting ATLAS job with PandaID=7035726626
[2026-03-03 04:28:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 05:36:18]  *** The last 200 lines of the pilot log: ***
[2026-03-03 05:36:18]  guid=6c12022f-0fd7-47d8-9714-8f38bce1e962
[2026-03-03 05:36:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-03 05:36:18]  is_altstaged=None
[2026-03-03 05:36:18]  is_tar=False
[2026-03-03 05:36:18]  lfn=log.48700858._001540.job.log.tgz.1
[2026-03-03 05:36:18]  mtime=0
[2026-03-03 05:36:18]  protocol_id=None
[2026-03-03 05:36:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 05:36:18]  replicas=None
[2026-03-03 05:36:18]  scope=mc23_13p6TeV
[2026-03-03 05:36:18]  status=None
[2026-03-03 05:36:18]  status_code=0
[2026-03-03 05:36:18]  storage_token=
[2026-03-03 05:36:18]  surl=/var/lib/boinc/var/slot108/slots/0/PanDA_Pilot-7035726626/log.48700858._001540.job.log.tgz.1
[2026-03-03 05:36:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/81/log.48700858._001540.job.log.tgz.1
[2026-03-03 05:36:18]  workdir=None
[2026-03-03 05:36:18] ]
[2026-03-03 05:36:18] 2026-03-03 04:35:34,908 | INFO     | transferring file log.48700858._001540.job.log.tgz.1 from /var/lib/boinc/var/slot108/slots/0/PanDA_Pilot-7035726626/log.48700858._001540.job.log.tgz.1 to /var/lib/
[2026-03-03 05:36:18] 2026-03-03 04:35:34,908 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot108/slots/0/PanDA_Pilot-7035726626/log.48700858._001540.job.log.tgz.1 /var/lib/boinc/var/slot108/slots/0/
[2026-03-03 05:36:18] 2026-03-03 04:35:34,925 | INFO     | adding to output.list: log.48700858._001540.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/81/log.48700858._001540.job.log.tg
[2026-03-03 05:36:18] 2026-03-03 04:35:34,925 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 05:36:18] 2026-03-03 04:35:34,926 | INFO     | summary of transferred files:
[2026-03-03 05:36:18] 2026-03-03 04:35:34,926 | INFO     |  -- lfn=log.48700858._001540.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 05:36:18] 2026-03-03 04:35:34,926 | INFO     | stage-out finished correctly
[2026-03-03 05:36:18] 2026-03-03 04:35:35,583 | INFO     | time since job start (3989s) is within the limit (349056.0s)
[2026-03-03 05:36:18] 2026-03-03 04:35:37,253 | INFO     | monitor loop #293: job 0:7035726626 is in state 'finished'
[2026-03-03 05:36:18] 2026-03-03 04:35:37,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-03 05:36:18] 2026-03-03 04:35:37,588 | INFO     | time since job start (3991s) is within the limit (349056.0s)
[2026-03-03 05:36:18] 2026-03-03 04:35:38,397 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 05:36:18] 2026-03-03 04:35:38,446 | INFO     | job 7035726626 has state=finished
[2026-03-03 05:36:18] 2026-03-03 04:35:38,446 | INFO     | preparing for final server update for job 7035726626 in state='finished'
[2026-03-03 05:36:18] 2026-03-03 04:35:39,018 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,019 | INFO     | reading metadata from: /var/lib/boinc/var/slot108/slots/0/PanDA_Pilot-7035726626/jobReport.json
[2026-03-03 05:36:18] 2026-03-03 04:35:39,020 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot108/slots/0/workernode_map.json
[2026-03-03 05:36:18] 2026-03-03 04:35:39,020 | INFO     | this job has now completed (state=finished)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,020 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,020 | INFO     | log transfer has been attempted: DONE
[2026-03-03 05:36:18] 2026-03-03 04:35:39,020 | INFO     | job 7035726626 has finished - writing final server update
[2026-03-03 05:36:18] 2026-03-03 04:35:39,021 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_16103/.job.ad'
[2026-03-03 05:36:18] 2026-03-03 04:35:39,021 | INFO     | total number of processed events: 400 (read)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,038 | INFO     | using path: /var/lib/boinc/var/slot108/slots/0/PanDA_Pilot-7035726626/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,038 | INFO     | extracted standard info from prmon json
[2026-03-03 05:36:18] 2026-03-03 04:35:39,039 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 05:36:18] 2026-03-03 04:35:39,039 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 05:36:18] 2026-03-03 04:35:39,039 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 05:36:18] 2026-03-03 04:35:39,039 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | fitting pss+swap vs Time
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | sum of square deviations: 60482994.5
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | sum of deviations: -232555942.5
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | mean x: 1772510608.5
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | mean y: 2330320.9827586208
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | intersect: 6817599283.086908
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | chi2: 0.00022458989885701676
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | current memory leak: -3.84 B/s (using 58 data points, chi2=0.00)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | could have reported an average CPU frequency of 3610 MHz (6 samples)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,040 | INFO     | ..............................
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | . Timing measurements:
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | . get job = 0 s
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | . initial setup = 4 s
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | . payload setup = 4 s
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | . stage-in = 0 s
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | . payload execution = 3968 s
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | . stage-out = 0 s
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | . log creation = 0 s
[2026-03-03 05:36:18] 2026-03-03 04:35:39,041 | INFO     | ..............................
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | 
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | job summary report
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | --------------------------------------------------
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | PanDA job id: 7035726626
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | task id: 48700858
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | errors: (none)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | pilot state: finished 
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | transexitcode: 0
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | exeerrorcode: 0
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | exeerrordiag: 
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | exitcode: 0
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | exitmsg: OK
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | cpuconsumptiontime: 15144 s
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | nevents: 400
[2026-03-03 05:36:18] 2026-03-03 04:35:39,091 | INFO     | neventsw: 0
[2026-03-03 05:36:18] 2026-03-03 04:35:39,094 | INFO     | pid: 2750038
[2026-03-03 05:36:18] 2026-03-03 04:35:39,094 | INFO     | pgrp: 2750038
[2026-03-03 05:36:18] 2026-03-03 04:35:39,094 | INFO     | corecount: 4
[2026-03-03 05:36:18] 2026-03-03 04:35:39,094 | INFO     | event service: False
[2026-03-03 05:36:18] 2026-03-03 04:35:39,094 | INFO     | sizes: {0: 2282177, 11: 2282177, 3976: 2308066, 3978: 2317088, 3981: 2317144, 3982: 2317338}
[2026-03-03 05:36:18] 2026-03-03 04:35:39,094 | INFO     | --------------------------------------------------
[2026-03-03 05:36:18] 2026-03-03 04:35:39,094 | INFO     | 
[2026-03-03 05:36:18] 2026-03-03 04:35:39,094 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot108/slots/0
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | job 7035726626 has completed (purged errors)
[2026-03-03 05:36:18] 2026-03-03 04:35:39,113 | INFO     | overall cleanup function is called
[2026-03-03 05:36:18] 2026-03-03 04:35:40,119 | INFO     | --- collectZombieJob: --- 10, [2750038]
[2026-03-03 05:36:18] 2026-03-03 04:35:40,120 | INFO     | zombie collector waiting for pid 2750038
[2026-03-03 05:36:18] 2026-03-03 04:35:40,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 05:36:18] 2026-03-03 04:35:40,120 | INFO     | collected zombie processes
[2026-03-03 05:36:18] 2026-03-03 04:35:40,120 | INFO     | will attempt to kill all subprocesses of pid=2750038
[2026-03-03 05:36:18] 2026-03-03 04:35:40,552 | INFO     | process IDs to be killed: [2750038] (in reverse order)
[2026-03-03 05:36:18] 2026-03-03 04:35:40,754 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 05:36:18] 2026-03-03 04:35:40,755 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 05:36:18] 2026-03-03 04:35:40,780 | INFO     | did not find any defunct processes belonging to 2750038
[2026-03-03 05:36:18] 2026-03-03 04:35:40,803 | INFO     | did not find any defunct processes belonging to 2750038
[2026-03-03 05:36:18] 2026-03-03 04:35:40,804 | INFO     | ready for new job
[2026-03-03 05:36:18] 2026-03-03 04:35:40,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 05:36:18] 2026-03-03 04:35:40,805 | INFO     | **************************************
[2026-03-03 05:36:18] 2026-03-03 04:35:40,805 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 05:36:18] 2026-03-03 04:35:40,805 | INFO     | **************************************
[2026-03-03 05:36:18] 2026-03-03 04:35:40,805 | INFO     | 
[2026-03-03 05:36:18] 2026-03-03 04:35:40,811 | INFO     | architecture information:
[2026-03-03 05:36:18] 2026-03-03 04:35:40,811 | INFO     | executing command: cat /etc/os-release
[2026-03-03 05:36:18] 2026-03-03 04:35:40,825 | INFO     | cat /etc/os-release:
[2026-03-03 05:36:18] NAME="CentOS Linux"
[2026-03-03 05:36:18] VERSION="7 (Core)"
[2026-03-03 05:36:18] ID="centos"
[2026-03-03 05:36:18] ID_LIKE="rhel fedora"
[2026-03-03 05:36:18] VERSION_ID="7"
[2026-03-03 05:36:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 05:36:18] ANSI_COLOR="0;31"
[2026-03-03 05:36:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 05:36:18] HOME_URL="https://www.centos.org/"
[2026-03-03 05:36:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 05:36:18] 
[2026-03-03 05:36:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 05:36:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 05:36:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 05:36:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 05:36:18] 
[2026-03-03 05:36:18] 2026-03-03 04:35:40,825 | INFO     | **************************************
[2026-03-03 05:36:18] 2026-03-03 04:35:41,328 | INFO     | executing command: df -mP /var/lib/boinc/var/slot108/slots/0
[2026-03-03 05:36:18] 2026-03-03 04:35:41,345 | INFO     | sufficient remaining disk space (21087911936 B)
[2026-03-03 05:36:18] 2026-03-03 04:35:41,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 05:36:18] 2026-03-03 04:35:41,345 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 05:36:18] 2026-03-03 04:35:41,345 | INFO     | update_server=False
[2026-03-03 05:36:18] 2026-03-03 04:35:41,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 05:36:18] 2026-03-03 04:35:41,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 05:36:18] 2026-03-03 04:35:41,346 | INFO     | aborting loop
[2026-03-03 05:36:18] 2026-03-03 04:35:41,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 05:36:18] 2026-03-03 04:35:41,727 | INFO     | all job control threads have been joined
[2026-03-03 05:36:18] 2026-03-03 04:35:42,057 | INFO     | all data control threads have been joined
[2026-03-03 05:36:18] 2026-03-03 04:35:42,350 | INFO     | [job] retrieve thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:42,351 | INFO     | [job] job monitor thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:42,440 | INFO     | all payload control threads have been joined
[2026-03-03 05:36:18] 2026-03-03 04:35:42,731 | INFO     | [job] control thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:42,820 | INFO     | [job] validate thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:42,952 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:42,959 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:43,063 | INFO     | [data] control thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:43,134 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:43,253 | INFO     | [data] copytool_in thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:43,350 | INFO     | [data] copytool_out thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:43,444 | INFO     | [payload] control thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:43,576 | INFO     | [payload] failed_post thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:43,612 | INFO     | [payload] validate_post thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:43,750 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:44,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 05:36:18] 2026-03-03 04:35:44,452 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 05:36:18] 2026-03-03 04:35:45,106 | INFO     | [job] queue monitor thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:35:48,457 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 05:36:18] 2026-03-03 04:36:11,052 | INFO     | PID=2744202 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 05:36:18] 2026-03-03 04:36:11,052 | INFO     | .. there are 47 such processes running
[2026-03-03 05:36:18] 2026-03-03 04:36:11,052 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 05:36:18] 2026-03-03 04:36:11,052 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 05:36:18] 2026-03-03 04:36:11,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 05:36:18] 2026-03-03 04:36:12,125 | INFO     | [monitor] cgroup control has ended
[2026-03-03 05:36:18] 2026-03-03 04:36:12,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22444770813760)>', '<ExcThread(monitor, started 22444535727872)>']
[2026-03-03 05:36:18] 2026-03-03 04:36:13,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 05:36:18] 2026-03-03 04:36:13,063 | INFO     | [monitor] control thread has ended
[2026-03-03 05:36:18] 2026-03-03 04:36:17,886 | INFO     | all workflow threads have been joined
[2026-03-03 05:36:18] 2026-03-03 04:36:17,887 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 05:36:18] 2026-03-03 04:36:17,887 | INFO     | traces error code: 0
[2026-03-03 05:36:18] 2026-03-03 04:36:17,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 05:36:18] 2026-03-03 04:36:17,999 [wrapper] ==== pilot stdout END ====
[2026-03-03 05:36:18] 2026-03-03 04:36:18,003 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 05:36:18] 2026-03-03 04:36:18,006 [wrapper] pilotpid: 2744202
[2026-03-03 05:36:18] 2026-03-03 04:36:18,008 [wrapper] Pilot exit status: 0
[2026-03-03 05:36:18] 2026-03-03 04:36:18,018 [wrapper] pandaids: 7035726626
[2026-03-03 05:36:18] 2026-03-03 04:36:18,134 [wrapper] cleanup supervisor_pilot 3261024 2744203
[2026-03-03 05:36:18] 2026-03-03 04:36:18,137 [wrapper] Test setup, not cleaning
[2026-03-03 05:36:18] 2026-03-03 04:36:18,139 [wrapper] apfmon messages muted
[2026-03-03 05:36:18] 2026-03-03 04:36:18,141 [wrapper] ==== wrapper stdout END ====
[2026-03-03 05:36:18] 2026-03-03 04:36:18,143 [wrapper] ==== wrapper stderr END ====
[2026-03-03 05:36:18]  *** Error codes and diagnostics ***
[2026-03-03 05:36:18]     "exeErrorCode": 0,
[2026-03-03 05:36:18]     "exeErrorDiag": "",
[2026-03-03 05:36:18]     "pilotErrorCode": 0,
[2026-03-03 05:36:18]     "pilotErrorDiag": "",
[2026-03-03 05:36:18]  *** Listing of results directory ***
[2026-03-03 05:36:18] total 338244
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc    584627 Mar  2 01:56 pilot3.tar.gz
[2026-03-03 05:36:18] -rwx------. 1 boinc boinc     36322 Mar  2 01:57 runpilot2-wrapper.sh
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc      5111 Mar  2 01:57 queuedata.json
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc       100 Mar  3 04:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 05:36:18] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 04:28 run_atlas
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc       105 Mar  3 04:28 job.xml
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc      6706 Mar  3 04:28 init_data.xml
[2026-03-03 05:36:18] -rw-r--r--. 2 boinc boinc 191753107 Mar  3 04:28 EVNT.48700856._000062.pool.root.1
[2026-03-03 05:36:18] -rw-r--r--. 2 boinc boinc     15845 Mar  3 04:28 start_atlas.sh
[2026-03-03 05:36:18] drwxrwx--x. 2 boinc boinc      4096 Mar  3 04:28 shared
[2026-03-03 05:36:18] -rw-r--r--. 2 boinc boinc    597938 Mar  3 04:28 input.tar.gz
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc         0 Mar  3 04:28 boinc_lockfile
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc      2520 Mar  3 04:28 pandaJob.out
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc    997730 Mar  3 04:29 agis_schedconf.cvmfs.json
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc   1512931 Mar  3 04:29 agis_ddmendpoints.agis.ALL.json
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc       444 Mar  3 04:29 workernode_map.json
[2026-03-03 05:36:18] drwx------. 5 boinc boinc      4096 Mar  3 04:29 pilot3
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc 148976948 Mar  3 05:35 HITS.48700858._001540.pool.root.1
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc      1025 Mar  3 05:35 memory_monitor_summary.json
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc        95 Mar  3 05:35 pilot_heartbeat.json
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc       529 Mar  3 05:35 boinc_task_state.xml
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc    252157 Mar  3 05:35 log.48700858._001540.job.log.tgz.1
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc      6339 Mar  3 05:35 heartbeat.json
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc      8192 Mar  3 05:36 boinc_mmap_file
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc        27 Mar  3 05:36 wrapper_checkpoint.txt
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc      4830 Mar  3 05:36 pilotlog.txt
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc    597908 Mar  3 05:36 log.48700858._001540.job.log.1
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc       357 Mar  3 05:36 output.list
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc       620 Mar  3 05:36 runtime_log
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc    870400 Mar  3 05:36 result.tar.gz
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc      9221 Mar  3 05:36 runtime_log.err
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc       662 Mar  3 05:36 fGMMDmpm6G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmG99KDmIXW8Oo.diag
[2026-03-03 05:36:18] -rw-r--r--. 1 boinc boinc     21259 Mar  3 05:36 stderr.txt
[2026-03-03 05:36:18] HITS file was successfully produced:
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc 148976948 Mar  3 05:35 shared/HITS.pool.root.1
[2026-03-03 05:36:18]  *** Contents of shared directory: ***
[2026-03-03 05:36:18] total 334208
[2026-03-03 05:36:18] -rw-r--r--. 2 boinc boinc 191753107 Mar  3 04:28 ATLAS.root_0
[2026-03-03 05:36:18] -rw-r--r--. 2 boinc boinc     15845 Mar  3 04:28 start_atlas.sh
[2026-03-03 05:36:18] -rw-r--r--. 2 boinc boinc    597938 Mar  3 04:28 input.tar.gz
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc 148976948 Mar  3 05:35 HITS.pool.root.1
[2026-03-03 05:36:18] -rw-------. 1 boinc boinc    870400 Mar  3 05:36 result.tar.gz
05:36:19 (2739653): run_atlas exited; CPU time 15294.434710
05:36:19 (2739653): called boinc_finish(0)

</stderr_txt>
]]>

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