Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:53:28 (810602): wrapper (7.7.26015): starting
16:53:28 (810602): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 16:53:28] Arguments: --nthreads 3
[2026-03-02 16:53:28] Threads: 3
[2026-03-02 16:53:28] Checking for CVMFS
[2026-03-02 16:53:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 16:53:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 16:53:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 16:53:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 16:53:28] 2.9.2.0 2934 5693 83904 156811 3 50 20908311 36864001 0 130560 0 2248036 99.983 211246 7150 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 16:53:28] CVMFS is ok
[2026-03-02 16:53:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 16:53:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 16:53:28] Further information can be found at the LHC@home message board.
[2026-03-02 16:53:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 16:53:28] Checking for apptainer binary...
[2026-03-02 16:53:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 16:53:28] Running /usr/bin/apptainer --version
[2026-03-02 16:53:28] apptainer version 1.4.1-1.1
[2026-03-02 16:53:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 16:53:29] belleA263b
[2026-03-02 16:53:29] apptainer works
[2026-03-02 16:53:29] Set ATHENA_PROC_NUMBER=3
[2026-03-02 16:53:29] Set ATHENA_CORE_NUMBER=3
[2026-03-02 16:53:29] Starting ATLAS job with PandaID=7035726579
[2026-03-02 16:53:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 17:58:51]  *** The last 200 lines of the pilot log: ***
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | job 7035726579 has completed (purged errors)
[2026-03-02 17:58:51] 2026-03-02 16:58:15,573 | INFO     | overall cleanup function is called
[2026-03-02 17:58:51] 2026-03-02 16:58:16,580 | INFO     | --- collectZombieJob: --- 10, [819074]
[2026-03-02 17:58:51] 2026-03-02 16:58:16,580 | INFO     | zombie collector waiting for pid 819074
[2026-03-02 17:58:51] 2026-03-02 16:58:16,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 17:58:51] 2026-03-02 16:58:16,580 | INFO     | collected zombie processes
[2026-03-02 17:58:51] 2026-03-02 16:58:16,580 | INFO     | will attempt to kill all subprocesses of pid=819074
[2026-03-02 17:58:51] 2026-03-02 16:58:16,623 | INFO     | process IDs to be killed: [819074] (in reverse order)
[2026-03-02 17:58:51] 2026-03-02 16:58:16,649 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 17:58:51] 2026-03-02 16:58:16,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 17:58:51] 2026-03-02 16:58:16,651 | INFO     | did not find any defunct processes belonging to 819074
[2026-03-02 17:58:51] 2026-03-02 16:58:16,652 | INFO     | did not find any defunct processes belonging to 819074
[2026-03-02 17:58:51] 2026-03-02 16:58:16,652 | INFO     | ready for new job
[2026-03-02 17:58:51] 2026-03-02 16:58:16,652 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 17:58:51] 2026-03-02 16:58:16,653 | INFO     | **************************************
[2026-03-02 17:58:51] 2026-03-02 16:58:16,653 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 17:58:51] 2026-03-02 16:58:16,653 | INFO     | **************************************
[2026-03-02 17:58:51] 2026-03-02 16:58:16,653 | INFO     | 
[2026-03-02 17:58:51] 2026-03-02 16:58:16,653 | INFO     | architecture information:
[2026-03-02 17:58:51] 2026-03-02 16:58:16,654 | INFO     | executing command: cat /etc/os-release
[2026-03-02 17:58:51] 2026-03-02 16:58:16,663 | INFO     | cat /etc/os-release:
[2026-03-02 17:58:51] NAME="CentOS Linux"
[2026-03-02 17:58:51] VERSION="7 (Core)"
[2026-03-02 17:58:51] ID="centos"
[2026-03-02 17:58:51] ID_LIKE="rhel fedora"
[2026-03-02 17:58:51] VERSION_ID="7"
[2026-03-02 17:58:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 17:58:51] ANSI_COLOR="0;31"
[2026-03-02 17:58:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 17:58:51] HOME_URL="https://www.centos.org/"
[2026-03-02 17:58:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 17:58:51] 
[2026-03-02 17:58:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 17:58:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 17:58:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 17:58:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 17:58:51] 
[2026-03-02 17:58:51] 2026-03-02 16:58:16,663 | INFO     | **************************************
[2026-03-02 17:58:51] 2026-03-02 16:58:17,166 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 17:58:51] 2026-03-02 16:58:17,180 | INFO     | sufficient remaining disk space (383638306816 B)
[2026-03-02 17:58:51] 2026-03-02 16:58:17,180 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 17:58:51] 2026-03-02 16:58:17,180 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 17:58:51] 2026-03-02 16:58:17,181 | INFO     | update_server=False
[2026-03-02 17:58:51] 2026-03-02 16:58:17,181 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 17:58:51] 2026-03-02 16:58:17,181 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 17:58:51] 2026-03-02 16:58:17,181 | INFO     | aborting loop
[2026-03-02 17:58:51] 2026-03-02 16:58:17,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 17:58:51] 2026-03-02 16:58:17,181 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 17:58:51] 2026-03-02 16:58:17,254 | INFO     | all data control threads have been joined
[2026-03-02 17:58:51] 2026-03-02 16:58:17,673 | INFO     | all job control threads have been joined
[2026-03-02 17:58:51] 2026-03-02 16:58:18,186 | INFO     | [job] retrieve thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:18,187 | INFO     | [job] job monitor thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:18,187 | INFO     | [job] queue monitor thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:18,205 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:18,260 | INFO     | [data] control thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:18,448 | INFO     | all payload control threads have been joined
[2026-03-02 17:58:51] 2026-03-02 16:58:18,488 | INFO     | [payload] failed_post thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:18,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 17:58:51] 2026-03-02 16:58:18,679 | INFO     | [job] control thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:19,020 | INFO     | [payload] validate_post thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:19,349 | INFO     | [job] validate thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:19,414 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:19,417 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:19,454 | INFO     | [payload] control thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:19,565 | INFO     | [data] copytool_in thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:20,514 | INFO     | [data] copytool_out thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:21,188 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:27,563 | INFO     | job.realtimelogging is not enabled
[2026-03-02 17:58:51] 2026-03-02 16:58:28,568 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 17:58:51] 2026-03-02 16:58:44,690 | INFO     | [monitor] cgroup control has ended
[2026-03-02 17:58:51] 2026-03-02 16:58:45,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140679205037888)>', '<ExcThread(monitor, started 140678851958528)>']
[2026-03-02 17:58:51] 2026-03-02 16:58:47,211 | INFO     | PID=814643 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 17:58:51] 2026-03-02 16:58:47,211 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 17:58:51] 2026-03-02 16:58:47,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 17:58:51] 2026-03-02 16:58:47,211 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 17:58:51] 2026-03-02 16:58:47,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 17:58:51] 2026-03-02 16:58:47,211 | INFO     | [monitor] control thread has ended
[2026-03-02 17:58:51] 2026-03-02 16:58:50,914 | INFO     | all workflow threads have been joined
[2026-03-02 17:58:51] 2026-03-02 16:58:50,914 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 17:58:51] 2026-03-02 16:58:50,914 | INFO     | traces error code: 0
[2026-03-02 17:58:51] 2026-03-02 16:58:50,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 17:58:51] 2026-03-02 16:58:50,963 [wrapper] ==== pilot stdout END ====
[2026-03-02 17:58:51] 2026-03-02 16:58:50,966 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 17:58:51] 2026-03-02 16:58:50,968 [wrapper] pilotpid: 814643
[2026-03-02 17:58:51] 2026-03-02 16:58:50,971 [wrapper] Pilot exit status: 0
[2026-03-02 17:58:51] 2026-03-02 16:58:50,979 [wrapper] pandaids: 7035726579
[2026-03-02 17:58:51] 2026-03-02 16:58:50,997 [wrapper] cleanup supervisor_pilot  824289 814644
[2026-03-02 17:58:51] 2026-03-02 16:58:50,999 [wrapper] Test setup, not cleaning
[2026-03-02 17:58:51] 2026-03-02 16:58:51,002 [wrapper] apfmon messages muted
[2026-03-02 17:58:51] 2026-03-02 16:58:51,004 [wrapper] ==== wrapper stdout END ====
[2026-03-02 17:58:51] 2026-03-02 16:58:51,007 [wrapper] ==== wrapper stderr END ====
[2026-03-02 17:58:51]  *** Error codes and diagnostics ***
[2026-03-02 17:58:51]     "exeErrorCode": 0,
[2026-03-02 17:58:51]     "exeErrorDiag": "",
[2026-03-02 17:58:51]     "pilotErrorCode": 0,
[2026-03-02 17:58:51]     "pilotErrorDiag": "",
[2026-03-02 17:58:51]  *** Listing of results directory ***
[2026-03-02 17:58:51] total 342536
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc    584627 Mar  2 01:56 pilot3.tar.gz
[2026-03-02 17:58:51] -rwx------ 1 boinc boinc     36322 Mar  2 01:57 runpilot2-wrapper.sh
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc      5111 Mar  2 01:57 queuedata.json
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc       100 Mar  2 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 17:58:51] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 16:53 run_atlas
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc       105 Mar  2 16:53 job.xml
[2026-03-02 17:58:51] -rw-r--r-- 2 boinc boinc 192201024 Mar  2 16:53 EVNT.48700856._000060.pool.root.1
[2026-03-02 17:58:51] -rw-r--r-- 2 boinc boinc    597933 Mar  2 16:53 input.tar.gz
[2026-03-02 17:58:51] -rw-r--r-- 2 boinc boinc     15845 Mar  2 16:53 start_atlas.sh
[2026-03-02 17:58:51] drwxrwx--x 2 boinc boinc      4096 Mar  2 16:53 shared
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc         0 Mar  2 16:53 boinc_setup_complete
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc      6449 Mar  2 16:53 init_data.xml
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc         0 Mar  2 16:53 boinc_lockfile
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc      2520 Mar  2 16:53 pandaJob.out
[2026-03-02 17:58:51] -rw------- 1 boinc boinc    998123 Mar  2 16:53 agis_schedconf.cvmfs.json
[2026-03-02 17:58:51] -rw------- 1 boinc boinc   1512931 Mar  2 16:53 agis_ddmendpoints.agis.ALL.json
[2026-03-02 17:58:51] -rw------- 1 boinc boinc       426 Mar  2 16:53 workernode_map.json
[2026-03-02 17:58:51] drwx------ 5 boinc boinc      4096 Mar  2 16:53 pilot3
[2026-03-02 17:58:51] -rw------- 1 boinc boinc        95 Mar  2 17:57 pilot_heartbeat.json
[2026-03-02 17:58:51] -rw------- 1 boinc boinc 153006526 Mar  2 17:57 HITS.48700858._001493.pool.root.1
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc       529 Mar  2 17:58 boinc_task_state.xml
[2026-03-02 17:58:51] -rw------- 1 boinc boinc      1014 Mar  2 17:58 memory_monitor_summary.json
[2026-03-02 17:58:51] -rw------- 1 boinc boinc    236157 Mar  2 17:58 log.48700858._001493.job.log.tgz.1
[2026-03-02 17:58:51] -rw------- 1 boinc boinc      6302 Mar  2 17:58 heartbeat.json
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc        27 Mar  2 17:58 wrapper_checkpoint.txt
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc      8192 Mar  2 17:58 boinc_mmap_file
[2026-03-02 17:58:51] -rw------- 1 boinc boinc      4819 Mar  2 17:58 pilotlog.txt
[2026-03-02 17:58:51] -rw------- 1 boinc boinc    580152 Mar  2 17:58 log.48700858._001493.job.log.1
[2026-03-02 17:58:51] -rw------- 1 boinc boinc       357 Mar  2 17:58 output.list
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc       620 Mar  2 17:58 runtime_log
[2026-03-02 17:58:51] -rw------- 1 boinc boinc    829440 Mar  2 17:58 result.tar.gz
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc      8916 Mar  2 17:58 runtime_log.err
[2026-03-02 17:58:51] -rw------- 1 boinc boinc       661 Mar  2 17:58 2DDLDmpm6G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmh89KDmWEjOMm.diag
[2026-03-02 17:58:51] -rw-r--r-- 1 boinc boinc     12533 Mar  2 17:58 stderr.txt
[2026-03-02 17:58:51] HITS file was successfully produced:
[2026-03-02 17:58:51] -rw------- 1 boinc boinc 153006526 Mar  2 17:57 shared/HITS.pool.root.1
[2026-03-02 17:58:51]  *** Contents of shared directory: ***
[2026-03-02 17:58:51] total 338540
[2026-03-02 17:58:51] -rw-r--r-- 2 boinc boinc 192201024 Mar  2 16:53 ATLAS.root_0
[2026-03-02 17:58:51] -rw-r--r-- 2 boinc boinc    597933 Mar  2 16:53 input.tar.gz
[2026-03-02 17:58:51] -rw-r--r-- 2 boinc boinc     15845 Mar  2 16:53 start_atlas.sh
[2026-03-02 17:58:51] -rw------- 1 boinc boinc 153006526 Mar  2 17:57 HITS.pool.root.1
[2026-03-02 17:58:51] -rw------- 1 boinc boinc    829440 Mar  2 17:58 result.tar.gz
17:58:52 (810602): run_atlas exited; CPU time 10939.410009
17:58:52 (810602): called boinc_finish(0)

</stderr_txt>
]]>

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