Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:25:39 (687964): wrapper (7.7.26015): starting
05:25:39 (687964): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 05:25:39] Arguments: --nthreads 3
[2026-03-02 05:25:39] Threads: 3
[2026-03-02 05:25:39] Checking for CVMFS
[2026-03-02 05:25:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 05:25:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 05:25:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 05:25:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 05:25:40] 2.9.2.0 2927 5011 79440 156795 0 49 5647147 36864001 0 130560 0 1927991 99.981 190646 13082 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 05:25:40] CVMFS is ok
[2026-03-02 05:25:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 05:25:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 05:25:40] Further information can be found at the LHC@home message board.
[2026-03-02 05:25:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 05:25:40] Checking for apptainer binary...
[2026-03-02 05:25:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 05:25:40] Running /usr/bin/apptainer --version
[2026-03-02 05:25:40] apptainer version 1.4.1-1.1
[2026-03-02 05:25:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 05:25:40] belleA259
[2026-03-02 05:25:40] apptainer works
[2026-03-02 05:25:40] Set ATHENA_PROC_NUMBER=3
[2026-03-02 05:25:40] Set ATHENA_CORE_NUMBER=3
[2026-03-02 05:25:40] Starting ATLAS job with PandaID=7035726429
[2026-03-02 05:25:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 06:32:14]  *** The last 200 lines of the pilot log: ***
[2026-03-02 06:32:14] 2026-03-02 05:31:43,217 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 06:32:14] 2026-03-02 05:31:43,217 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 06:32:14] 2026-03-02 05:31:43,218 | INFO     | did not find any defunct processes belonging to 696435
[2026-03-02 06:32:14] 2026-03-02 05:31:43,219 | INFO     | did not find any defunct processes belonging to 696435
[2026-03-02 06:32:14] 2026-03-02 05:31:43,219 | INFO     | ready for new job
[2026-03-02 06:32:14] 2026-03-02 05:31:43,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 06:32:14] 2026-03-02 05:31:43,220 | INFO     | **************************************
[2026-03-02 06:32:14] 2026-03-02 05:31:43,220 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 06:32:14] 2026-03-02 05:31:43,220 | INFO     | **************************************
[2026-03-02 06:32:14] 2026-03-02 05:31:43,220 | INFO     | 
[2026-03-02 06:32:14] 2026-03-02 05:31:43,220 | INFO     | architecture information:
[2026-03-02 06:32:14] 2026-03-02 05:31:43,221 | INFO     | executing command: cat /etc/os-release
[2026-03-02 06:32:14] 2026-03-02 05:31:43,230 | INFO     | cat /etc/os-release:
[2026-03-02 06:32:14] NAME="CentOS Linux"
[2026-03-02 06:32:14] VERSION="7 (Core)"
[2026-03-02 06:32:14] ID="centos"
[2026-03-02 06:32:14] ID_LIKE="rhel fedora"
[2026-03-02 06:32:14] VERSION_ID="7"
[2026-03-02 06:32:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 06:32:14] ANSI_COLOR="0;31"
[2026-03-02 06:32:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 06:32:14] HOME_URL="https://www.centos.org/"
[2026-03-02 06:32:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 06:32:14] 
[2026-03-02 06:32:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 06:32:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 06:32:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 06:32:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 06:32:14] 
[2026-03-02 06:32:14] 2026-03-02 05:31:43,230 | INFO     | **************************************
[2026-03-02 06:32:14] 2026-03-02 05:31:43,733 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 06:32:14] 2026-03-02 05:31:43,747 | INFO     | sufficient remaining disk space (356353310720 B)
[2026-03-02 06:32:14] 2026-03-02 05:31:43,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 06:32:14] 2026-03-02 05:31:43,747 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 06:32:14] 2026-03-02 05:31:43,747 | INFO     | update_server=False
[2026-03-02 06:32:14] 2026-03-02 05:31:43,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 06:32:14] 2026-03-02 05:31:43,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 06:32:14] 2026-03-02 05:31:43,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 06:32:14] 2026-03-02 05:31:44,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 06:32:14] 2026-03-02 05:31:44,172 | INFO     | aborting loop
[2026-03-02 06:32:14] 2026-03-02 05:31:44,429 | INFO     | all data control threads have been joined
[2026-03-02 06:32:14] 2026-03-02 05:31:44,722 | INFO     | all payload control threads have been joined
[2026-03-02 06:32:14] 2026-03-02 05:31:44,753 | INFO     | [job] retrieve thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:44,754 | INFO     | [job] queue monitor thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:44,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 06:32:14] 2026-03-02 05:31:45,178 | INFO     | [job] job monitor thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,329 | INFO     | [job] validate thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,335 | INFO     | all job control threads have been joined
[2026-03-02 06:32:14] 2026-03-02 05:31:45,393 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,403 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,435 | INFO     | [data] control thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,531 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,544 | INFO     | [data] copytool_in thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,728 | INFO     | [payload] control thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,731 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:45,760 | INFO     | [payload] validate_post thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:46,318 | INFO     | [payload] failed_post thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:46,341 | INFO     | [job] control thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:46,839 | INFO     | [data] copytool_out thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:47,754 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 06:32:14] 2026-03-02 05:31:55,903 | INFO     | [monitor] cgroup control has ended
[2026-03-02 06:32:14] 2026-03-02 05:31:56,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623422367552)>', '<ExcThread(monitor, started 140622765733632)>']
[2026-03-02 06:32:14] 2026-03-02 05:32:01,793 | INFO     | all workflow threads have been joined
[2026-03-02 06:32:14] 2026-03-02 05:32:01,793 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 06:32:14] 2026-03-02 05:32:01,793 | INFO     | traces error code: 0
[2026-03-02 06:32:14] 2026-03-02 05:32:01,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 06:32:14] 2026-03-02 05:32:14,028 | INFO     | PID=692005 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 06:32:14] 2026-03-02 05:32:14,028 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 06:32:14] 2026-03-02 05:32:14,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 06:32:14] 2026-03-02 05:32:14,029 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 06:32:14] 2026-03-02 05:32:14,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 06:32:14] 2026-03-02 05:32:14,029 | INFO     | [monitor] control thread has ended
[2026-03-02 06:32:14] 2026-03-02 05:32:14,074 [wrapper] ==== pilot stdout END ====
[2026-03-02 06:32:14] 2026-03-02 05:32:14,076 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 06:32:14] 2026-03-02 05:32:14,079 [wrapper] pilotpid: 692005
[2026-03-02 06:32:14] 2026-03-02 05:32:14,081 [wrapper] Pilot exit status: 0
[2026-03-02 06:32:14] 2026-03-02 05:32:14,089 [wrapper] pandaids: 7035726429
[2026-03-02 06:32:14] 2026-03-02 05:32:14,105 [wrapper] cleanup supervisor_pilot  701331 692006
[2026-03-02 06:32:14] 2026-03-02 05:32:14,108 [wrapper] Test setup, not cleaning
[2026-03-02 06:32:14] 2026-03-02 05:32:14,111 [wrapper] apfmon messages muted
[2026-03-02 06:32:14] 2026-03-02 05:32:14,113 [wrapper] ==== wrapper stdout END ====
[2026-03-02 06:32:14] 2026-03-02 05:32:14,116 [wrapper] ==== wrapper stderr END ====
[2026-03-02 06:32:14]  *** Error codes and diagnostics ***
[2026-03-02 06:32:14]     "exeErrorCode": 0,
[2026-03-02 06:32:14]     "exeErrorDiag": "",
[2026-03-02 06:32:14]     "pilotErrorCode": 0,
[2026-03-02 06:32:14]     "pilotErrorDiag": "",
[2026-03-02 06:32:14]  *** Listing of results directory ***
[2026-03-02 06:32:14] total 333856
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc      5111 Mar  2 01:56 queuedata.json
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc    584627 Mar  2 01:56 pilot3.tar.gz
[2026-03-02 06:32:14] -rwx------ 1 boinc boinc     36322 Mar  2 01:57 runpilot2-wrapper.sh
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc       100 Mar  2 05:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 06:32:14] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 05:25 run_atlas
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc       105 Mar  2 05:25 job.xml
[2026-03-02 06:32:14] -rw-r--r-- 2 boinc boinc 188799336 Mar  2 05:25 EVNT.48700856._000006.pool.root.1
[2026-03-02 06:32:14] drwxrwx--x 2 boinc boinc      4096 Mar  2 05:25 shared
[2026-03-02 06:32:14] -rw-r--r-- 2 boinc boinc    597934 Mar  2 05:25 input.tar.gz
[2026-03-02 06:32:14] -rw-r--r-- 2 boinc boinc     15845 Mar  2 05:25 start_atlas.sh
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc         0 Mar  2 05:25 boinc_setup_complete
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc      6445 Mar  2 05:25 init_data.xml
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc         0 Mar  2 05:25 boinc_lockfile
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc      2515 Mar  2 05:25 pandaJob.out
[2026-03-02 06:32:14] -rw------- 1 boinc boinc    998242 Mar  2 05:25 agis_schedconf.cvmfs.json
[2026-03-02 06:32:14] -rw------- 1 boinc boinc   1513015 Mar  2 05:25 agis_ddmendpoints.agis.ALL.json
[2026-03-02 06:32:14] -rw------- 1 boinc boinc       425 Mar  2 05:25 workernode_map.json
[2026-03-02 06:32:14] drwx------ 5 boinc boinc      4096 Mar  2 05:25 pilot3
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc       529 Mar  2 06:31 boinc_task_state.xml
[2026-03-02 06:32:14] -rw------- 1 boinc boinc 147477590 Mar  2 06:31 HITS.48700858._001343.pool.root.1
[2026-03-02 06:32:14] -rw------- 1 boinc boinc      1011 Mar  2 06:31 memory_monitor_summary.json
[2026-03-02 06:32:14] -rw------- 1 boinc boinc    247374 Mar  2 06:31 log.48700858._001343.job.log.tgz.1
[2026-03-02 06:32:14] -rw------- 1 boinc boinc      6292 Mar  2 06:31 heartbeat.json
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc      8192 Mar  2 06:31 boinc_mmap_file
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc        27 Mar  2 06:31 wrapper_checkpoint.txt
[2026-03-02 06:32:14] -rw------- 1 boinc boinc       746 Mar  2 06:32 pilotlog.txt
[2026-03-02 06:32:14] -rw------- 1 boinc boinc        95 Mar  2 06:32 pilot_heartbeat.json
[2026-03-02 06:32:14] -rw------- 1 boinc boinc    590191 Mar  2 06:32 log.48700858._001343.job.log.1
[2026-03-02 06:32:14] -rw------- 1 boinc boinc       357 Mar  2 06:32 output.list
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc       620 Mar  2 06:32 runtime_log
[2026-03-02 06:32:14] -rw------- 1 boinc boinc    860160 Mar  2 06:32 result.tar.gz
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc      8911 Mar  2 06:32 runtime_log.err
[2026-03-02 06:32:14] -rw------- 1 boinc boinc       660 Mar  2 06:32 3e2NDmom6G9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmu4BLDm0dNm4n.diag
[2026-03-02 06:32:14] -rw-r--r-- 1 boinc boinc      9960 Mar  2 06:32 stderr.txt
[2026-03-02 06:32:14] HITS file was successfully produced:
[2026-03-02 06:32:14] -rw------- 1 boinc boinc 147477590 Mar  2 06:31 shared/HITS.pool.root.1
[2026-03-02 06:32:14]  *** Contents of shared directory: ***
[2026-03-02 06:32:14] total 329844
[2026-03-02 06:32:14] -rw-r--r-- 2 boinc boinc 188799336 Mar  2 05:25 ATLAS.root_0
[2026-03-02 06:32:14] -rw-r--r-- 2 boinc boinc    597934 Mar  2 05:25 input.tar.gz
[2026-03-02 06:32:14] -rw-r--r-- 2 boinc boinc     15845 Mar  2 05:25 start_atlas.sh
[2026-03-02 06:32:14] -rw------- 1 boinc boinc 147477590 Mar  2 06:31 HITS.pool.root.1
[2026-03-02 06:32:14] -rw------- 1 boinc boinc    860160 Mar  2 06:32 result.tar.gz
06:32:16 (687964): run_atlas exited; CPU time 11151.722910
06:32:16 (687964): called boinc_finish(0)

</stderr_txt>
]]>

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