Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:16:37 (1375648): wrapper (7.7.26015): starting
19:16:37 (1375648): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 19:16:37] Arguments: --nthreads 4
[2026-03-03 19:16:37] Threads: 4
[2026-03-03 19:16:37] Checking for CVMFS
[2026-03-03 19:16:37] No cvmfs_config command found, will try listing directly
[2026-03-03 19:16:37] CVMFS is ok
[2026-03-03 19:16:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 19:16:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 19:16:37] Further information can be found at the LHC@home message board.
[2026-03-03 19:16:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 19:16:37] Checking for apptainer binary...
[2026-03-03 19:16:37] which: no apptainer in ((null))
[2026-03-03 19:16:37] apptainer is not installed, using version from CVMFS
[2026-03-03 19:16:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 19:16:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-03 19:16:38] apptainer works
[2026-03-03 19:16:38] Set ATHENA_PROC_NUMBER=4
[2026-03-03 19:16:38] Set ATHENA_CORE_NUMBER=4
[2026-03-03 19:16:38] Starting ATLAS job with PandaID=7035669244
[2026-03-03 19:16:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 22:57:21]  *** The last 200 lines of the pilot log: ***
[2026-03-03 22:57:21] 2026-03-03 21:56:24,585 | INFO     | reading metadata from: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-7035669244/jobReport.json
[2026-03-03 22:57:21] 2026-03-03 21:56:24,588 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot48/slots/0/workernode_map.json
[2026-03-03 22:57:21] 2026-03-03 21:56:24,588 | INFO     | this job has now completed (state=finished)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,588 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,588 | INFO     | log transfer has been attempted: DONE
[2026-03-03 22:57:21] 2026-03-03 21:56:24,588 | INFO     | job 7035669244 has finished - writing final server update
[2026-03-03 22:57:21] 2026-03-03 21:56:24,589 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2257335/.job.ad'
[2026-03-03 22:57:21] 2026-03-03 21:56:24,589 | INFO     | total number of processed events: 400 (read)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,602 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-7035669244/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,603 | INFO     | extracted standard info from prmon json
[2026-03-03 22:57:21] 2026-03-03 21:56:24,603 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 22:57:21] 2026-03-03 21:56:24,603 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 22:57:21] 2026-03-03 21:56:24,604 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 22:57:21] 2026-03-03 21:56:24,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 22:57:21] 2026-03-03 21:56:24,608 | INFO     | fitting pss+swap vs Time
[2026-03-03 22:57:21] 2026-03-03 21:56:24,608 | INFO     | sum of square deviations: 3124858590.0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,609 | INFO     | sum of deviations: -36309734977.0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,609 | INFO     | mean x: 1772568394.5
[2026-03-03 22:57:21] 2026-03-03 21:56:24,610 | INFO     | mean y: 2372702.064814815
[2026-03-03 22:57:21] 2026-03-03 21:56:24,610 | INFO     | intersect: 20598981085.838554
[2026-03-03 22:57:21] 2026-03-03 21:56:24,610 | INFO     | chi2: 1.5905134135238808
[2026-03-03 22:57:21] 2026-03-03 21:56:24,610 | INFO     | sum of square deviations: 2912836010.0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,612 | INFO     | sum of deviations: -35275737274.999985
[2026-03-03 22:57:21] 2026-03-03 21:56:24,612 | INFO     | mean x: 1772568242.0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,612 | INFO     | mean y: 2373446.6872037915
[2026-03-03 22:57:21] 2026-03-03 21:56:24,612 | INFO     | intersect: 21468961813.53474
[2026-03-03 22:57:21] 2026-03-03 21:56:24,612 | INFO     | chi2: 1.5862212479727433
[2026-03-03 22:57:21] 2026-03-03 21:56:24,613 | INFO     | current chi2=1.5862212479727433 (change=0.2698603805942051 %)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,613 | INFO     | right removable region: 210
[2026-03-03 22:57:21] 2026-03-03 21:56:24,613 | INFO     | sum of square deviations: 2912836010.0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,614 | INFO     | sum of deviations: -60170301058.0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,614 | INFO     | mean x: 1772568547.0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,614 | INFO     | mean y: 2389606.3127962085
[2026-03-03 22:57:21] 2026-03-03 21:56:24,615 | INFO     | intersect: 36618245340.30299
[2026-03-03 22:57:21] 2026-03-03 21:56:24,615 | INFO     | chi2: 0.31856502580788193
[2026-03-03 22:57:21] 2026-03-03 21:56:24,615 | INFO     | current chi2=0.31856502580788193 (change=79.97093120377518 %)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,615 | INFO     | sum of square deviations: 2710627567.5
[2026-03-03 22:57:21] 2026-03-03 21:56:24,616 | INFO     | sum of deviations: -54475565507.5
[2026-03-03 22:57:21] 2026-03-03 21:56:24,617 | INFO     | mean x: 1772568699.5
[2026-03-03 22:57:21] 2026-03-03 21:56:24,617 | INFO     | mean y: 2385291.9174757283
[2026-03-03 22:57:21] 2026-03-03 21:56:24,617 | INFO     | intersect: 35625752907.5633
[2026-03-03 22:57:21] 2026-03-03 21:56:24,617 | INFO     | chi2: 0.31323714067673647
[2026-03-03 22:57:21] 2026-03-03 21:56:24,617 | INFO     | current chi2=0.31323714067673647 (change=1.672463924008584 %)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,617 | INFO     | left removable region: 20
[2026-03-03 22:57:21] 2026-03-03 21:56:24,618 | INFO     | sum of square deviations: 2126802667.5
[2026-03-03 22:57:21] 2026-03-03 21:56:24,619 | INFO     | sum of deviations: -35231546923.0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,619 | INFO     | mean x: 1772568821.5
[2026-03-03 22:57:21] 2026-03-03 21:56:24,619 | INFO     | mean y: 2371441.642105263
[2026-03-03 22:57:21] 2026-03-03 21:56:24,619 | INFO     | intersect: 29365858032.68197
[2026-03-03 22:57:21] 2026-03-03 21:56:24,619 | INFO     | chi2: 0.2539235013236151
[2026-03-03 22:57:21] 2026-03-03 21:56:24,619 | INFO     | current memory leak: -16.57 B/s (using 190 data points, chi2=0.25)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,620 | INFO     | could have reported an average CPU frequency of 2584 MHz (11 samples)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,620 | INFO     | ..............................
[2026-03-03 22:57:21] 2026-03-03 21:56:24,620 | INFO     | . Timing measurements:
[2026-03-03 22:57:21] 2026-03-03 21:56:24,620 | INFO     | . get job = 0 s
[2026-03-03 22:57:21] 2026-03-03 21:56:24,620 | INFO     | . initial setup = 5 s
[2026-03-03 22:57:21] 2026-03-03 21:56:24,621 | INFO     | . payload setup = 6 s
[2026-03-03 22:57:21] 2026-03-03 21:56:24,621 | INFO     | . stage-in = 0 s
[2026-03-03 22:57:21] 2026-03-03 21:56:24,621 | INFO     | . payload execution = 13142 s
[2026-03-03 22:57:21] 2026-03-03 21:56:24,621 | INFO     | . stage-out = 0 s
[2026-03-03 22:57:21] 2026-03-03 21:56:24,621 | INFO     | . log creation = 0 s
[2026-03-03 22:57:21] 2026-03-03 21:56:24,621 | INFO     | ..............................
[2026-03-03 22:57:21] 2026-03-03 21:56:24,710 | INFO     | 
[2026-03-03 22:57:21] 2026-03-03 21:56:24,710 | INFO     | job summary report
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | --------------------------------------------------
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | PanDA job id: 7035669244
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | task id: 48844845
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | errors: (none)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | pilot state: finished 
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | transexitcode: 0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | exeerrorcode: 0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | exeerrordiag: 
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | exitcode: 0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,711 | INFO     | exitmsg: OK
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | cpuconsumptiontime: 50501 s
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | nevents: 400
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | neventsw: 0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | pid: 1384485
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | pgrp: 1384485
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | corecount: 4
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | event service: False
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | sizes: {0: 2286074, 1: 2287203, 12: 2287203, 13151: 2317402, 13152: 2326422, 13155: 2326478, 13158: 2326800}
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | --------------------------------------------------
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | 
[2026-03-03 22:57:21] 2026-03-03 21:56:24,712 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2026-03-03 22:57:21] 2026-03-03 21:56:24,733 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | job 7035669244 has completed (purged errors)
[2026-03-03 22:57:21] 2026-03-03 21:56:24,735 | INFO     | overall cleanup function is called
[2026-03-03 22:57:21] 2026-03-03 21:56:25,036 | INFO     | PID=1379641 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-03 22:57:21] 2026-03-03 21:56:25,036 | INFO     | .. there are 12 such processes running
[2026-03-03 22:57:21] 2026-03-03 21:56:25,742 | INFO     | --- collectZombieJob: --- 10, [1384485]
[2026-03-03 22:57:21] 2026-03-03 21:56:25,742 | INFO     | zombie collector waiting for pid 1384485
[2026-03-03 22:57:21] 2026-03-03 21:56:25,742 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 22:57:21] 2026-03-03 21:56:25,742 | INFO     | collected zombie processes
[2026-03-03 22:57:21] 2026-03-03 21:56:25,743 | INFO     | will attempt to kill all subprocesses of pid=1384485
[2026-03-03 22:57:21] 2026-03-03 21:56:26,049 | INFO     | process IDs to be killed: [1384485] (in reverse order)
[2026-03-03 22:57:21] 2026-03-03 21:56:26,150 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 22:57:21] 2026-03-03 21:56:26,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 22:57:21] 2026-03-03 21:56:26,161 | INFO     | did not find any defunct processes belonging to 1384485
[2026-03-03 22:57:21] 2026-03-03 21:56:26,170 | INFO     | did not find any defunct processes belonging to 1384485
[2026-03-03 22:57:21] 2026-03-03 21:56:26,170 | INFO     | ready for new job
[2026-03-03 22:57:21] 2026-03-03 21:56:26,170 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 22:57:21] 2026-03-03 21:56:26,172 | INFO     | **************************************
[2026-03-03 22:57:21] 2026-03-03 21:56:26,172 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 22:57:21] 2026-03-03 21:56:26,173 | INFO     | **************************************
[2026-03-03 22:57:21] 2026-03-03 21:56:26,173 | INFO     | 
[2026-03-03 22:57:21] 2026-03-03 21:56:26,176 | INFO     | architecture information:
[2026-03-03 22:57:21] 2026-03-03 21:56:26,177 | INFO     | executing command: cat /etc/os-release
[2026-03-03 22:57:21] 2026-03-03 21:56:26,191 | INFO     | cat /etc/os-release:
[2026-03-03 22:57:21] NAME="CentOS Linux"
[2026-03-03 22:57:21] VERSION="7 (Core)"
[2026-03-03 22:57:21] ID="centos"
[2026-03-03 22:57:21] ID_LIKE="rhel fedora"
[2026-03-03 22:57:21] VERSION_ID="7"
[2026-03-03 22:57:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 22:57:21] ANSI_COLOR="0;31"
[2026-03-03 22:57:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 22:57:21] HOME_URL="https://www.centos.org/"
[2026-03-03 22:57:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 22:57:21] 
[2026-03-03 22:57:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 22:57:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 22:57:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 22:57:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 22:57:21] 
[2026-03-03 22:57:21] 2026-03-03 21:56:26,191 | INFO     | **************************************
[2026-03-03 22:57:21] 2026-03-03 21:56:26,693 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2026-03-03 22:57:21] 2026-03-03 21:56:26,709 | INFO     | sufficient remaining disk space (672968736768 B)
[2026-03-03 22:57:21] 2026-03-03 21:56:26,709 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 22:57:21] 2026-03-03 21:56:26,710 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 22:57:21] 2026-03-03 21:56:26,710 | INFO     | update_server=False
[2026-03-03 22:57:21] 2026-03-03 21:56:26,710 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 22:57:21] 2026-03-03 21:56:26,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 22:57:21] 2026-03-03 21:56:26,710 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 22:57:21] 2026-03-03 21:56:26,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 22:57:21] 2026-03-03 21:56:26,711 | INFO     | aborting loop
[2026-03-03 22:57:21] 2026-03-03 21:56:27,163 | INFO     | all payload control threads have been joined
[2026-03-03 22:57:21] 2026-03-03 21:56:27,656 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 22:57:21] 2026-03-03 21:56:27,665 | INFO     | all job control threads have been joined
[2026-03-03 22:57:21] 2026-03-03 21:56:27,715 | INFO     | [job] job monitor thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:27,715 | INFO     | [job] retrieve thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:27,717 | INFO     | [job] queue monitor thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:27,722 | INFO     | all data control threads have been joined
[2026-03-03 22:57:21] 2026-03-03 21:56:27,837 | INFO     | [data] copytool_in thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:28,169 | INFO     | [payload] control thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:28,220 | INFO     | [payload] validate_post thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:28,669 | INFO     | [job] control thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:28,717 | INFO     | [data] copytool_out thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:28,727 | INFO     | [data] control thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:28,792 | INFO     | [payload] failed_post thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:28,802 | INFO     | [job] validate thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:28,959 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:29,073 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:29,205 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:31,662 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:37,179 | INFO     | job.realtimelogging is not enabled
[2026-03-03 22:57:21] 2026-03-03 21:56:38,185 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 22:57:21] 2026-03-03 21:56:57,468 | INFO     | PID=1379641 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 22:57:21] 2026-03-03 21:56:57,468 | INFO     | .. there are 12 such processes running
[2026-03-03 22:57:21] 2026-03-03 21:56:57,470 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 22:57:21] 2026-03-03 21:56:57,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 22:57:21] 2026-03-03 21:56:57,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 22:57:21] 2026-03-03 21:57:15,339 | INFO     | [monitor] cgroup control has ended
[2026-03-03 22:57:21] 2026-03-03 21:57:16,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23291605092160)>', '<ExcThread(monitor, started 23291365697280)>']
[2026-03-03 22:57:21] 2026-03-03 21:57:16,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 22:57:21] 2026-03-03 21:57:16,545 | INFO     | [monitor] control thread has ended
[2026-03-03 22:57:21] 2026-03-03 21:57:21,370 | INFO     | all workflow threads have been joined
[2026-03-03 22:57:21] 2026-03-03 21:57:21,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 22:57:21] 2026-03-03 21:57:21,371 | INFO     | traces error code: 0
[2026-03-03 22:57:21] 2026-03-03 21:57:21,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 22:57:21] 2026-03-03 21:57:21,508 [wrapper] ==== pilot stdout END ====
[2026-03-03 22:57:21] 2026-03-03 21:57:21,511 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 22:57:21] 2026-03-03 21:57:21,514 [wrapper] pilotpid: 1379641
[2026-03-03 22:57:21] 2026-03-03 21:57:21,516 [wrapper] Pilot exit status: 0
[2026-03-03 22:57:21] 2026-03-03 21:57:21,525 [wrapper] pandaids: 7035669244
[2026-03-03 22:57:21] 2026-03-03 21:57:21,588 [wrapper] cleanup supervisor_pilot 1563543 1379642
[2026-03-03 22:57:21] 2026-03-03 21:57:21,591 [wrapper] Test setup, not cleaning
[2026-03-03 22:57:21] 2026-03-03 21:57:21,593 [wrapper] apfmon messages muted
[2026-03-03 22:57:21] 2026-03-03 21:57:21,596 [wrapper] ==== wrapper stdout END ====
[2026-03-03 22:57:21] 2026-03-03 21:57:21,598 [wrapper] ==== wrapper stderr END ====
[2026-03-03 22:57:21]  *** Error codes and diagnostics ***
[2026-03-03 22:57:21]     "exeErrorCode": 0,
[2026-03-03 22:57:21]     "exeErrorDiag": "",
[2026-03-03 22:57:21]     "pilotErrorCode": 0,
[2026-03-03 22:57:21]     "pilotErrorDiag": "",
[2026-03-03 22:57:21]  *** Listing of results directory ***
[2026-03-03 22:57:21] total 366776
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc    584627 Mar  2 00:37 pilot3.tar.gz
[2026-03-03 22:57:21] -rwx------ 1 boinc boinc     36322 Mar  2 00:37 runpilot2-wrapper.sh
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc      5111 Mar  2 00:38 queuedata.json
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc       100 Mar  3 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 22:57:21] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 19:16 run_atlas
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc       105 Mar  3 19:16 job.xml
[2026-03-03 22:57:21] -rw-r--r-- 2 boinc boinc 213671897 Mar  3 19:16 EVNT.48454400._000001.pool.root.1
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc      6641 Mar  3 19:16 init_data.xml
[2026-03-03 22:57:21] -rw-r--r-- 2 boinc boinc     15845 Mar  3 19:16 start_atlas.sh
[2026-03-03 22:57:21] drwxrwx--x 2 boinc boinc      4096 Mar  3 19:16 shared
[2026-03-03 22:57:21] -rw-r--r-- 2 boinc boinc    597966 Mar  3 19:16 input.tar.gz
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc         0 Mar  3 19:16 boinc_lockfile
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc      2636 Mar  3 19:16 pandaJob.out
[2026-03-03 22:57:21] -rw------- 1 boinc boinc    998492 Mar  3 19:16 agis_schedconf.cvmfs.json
[2026-03-03 22:57:21] -rw------- 1 boinc boinc       452 Mar  3 19:16 workernode_map.json
[2026-03-03 22:57:21] drwx------ 5 boinc boinc      4096 Mar  3 19:16 pilot3
[2026-03-03 22:57:21] -rw------- 1 boinc boinc 153457876 Mar  3 22:55 HITS.48844845._000009.pool.root.1
[2026-03-03 22:57:21] -rw------- 1 boinc boinc      1033 Mar  3 22:56 memory_monitor_summary.json
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc       530 Mar  3 22:56 boinc_task_state.xml
[2026-03-03 22:57:21] -rw------- 1 boinc boinc   1516092 Mar  3 22:56 agis_ddmendpoints.agis.ALL.json
[2026-03-03 22:57:21] -rw------- 1 boinc boinc    385117 Mar  3 22:56 log.48844845._000009.job.log.tgz.1
[2026-03-03 22:57:21] -rw------- 1 boinc boinc      6391 Mar  3 22:56 heartbeat.json
[2026-03-03 22:57:21] -rw------- 1 boinc boinc        95 Mar  3 22:56 pilot_heartbeat.json
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc      8192 Mar  3 22:57 boinc_mmap_file
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc        28 Mar  3 22:57 wrapper_checkpoint.txt
[2026-03-03 22:57:21] -rw------- 1 boinc boinc      4902 Mar  3 22:57 pilotlog.txt
[2026-03-03 22:57:21] -rw------- 1 boinc boinc   1873637 Mar  3 22:57 log.48844845._000009.job.log.1
[2026-03-03 22:57:21] -rw------- 1 boinc boinc       357 Mar  3 22:57 output.list
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc       620 Mar  3 22:57 runtime_log
[2026-03-03 22:57:21] -rw------- 1 boinc boinc   2273280 Mar  3 22:57 result.tar.gz
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc      9205 Mar  3 22:57 runtime_log.err
[2026-03-03 22:57:21] -rw------- 1 boinc boinc       664 Mar  3 22:57 MEQLDm3W5G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmu49KDmVO955n.diag
[2026-03-03 22:57:21] -rw-r--r-- 1 boinc boinc     21196 Mar  3 22:57 stderr.txt
[2026-03-03 22:57:21] HITS file was successfully produced:
[2026-03-03 22:57:21] -rw------- 1 boinc boinc 153457876 Mar  3 22:55 shared/HITS.pool.root.1
[2026-03-03 22:57:21]  *** Contents of shared directory: ***
[2026-03-03 22:57:21] total 361356
[2026-03-03 22:57:21] -rw-r--r-- 2 boinc boinc 213671897 Mar  3 19:16 ATLAS.root_0
[2026-03-03 22:57:21] -rw-r--r-- 2 boinc boinc     15845 Mar  3 19:16 start_atlas.sh
[2026-03-03 22:57:21] -rw-r--r-- 2 boinc boinc    597966 Mar  3 19:16 input.tar.gz
[2026-03-03 22:57:21] -rw------- 1 boinc boinc 153457876 Mar  3 22:55 HITS.pool.root.1
[2026-03-03 22:57:21] -rw------- 1 boinc boinc   2273280 Mar  3 22:57 result.tar.gz
22:57:22 (1375648): run_atlas exited; CPU time 50941.380400
22:57:22 (1375648): called boinc_finish(0)

</stderr_txt>
]]>

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