Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:22:17 (3722165): wrapper (7.7.26015): starting
05:22:17 (3722165): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 05:22:17] Arguments: --nthreads 4
[2026-03-03 05:22:17] Threads: 4
[2026-03-03 05:22:17] Checking for CVMFS
[2026-03-03 05:22:17] No cvmfs_config command found, will try listing directly
[2026-03-03 05:22:17] CVMFS is ok
[2026-03-03 05:22:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 05:22:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 05:22:17] Further information can be found at the LHC@home message board.
[2026-03-03 05:22:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 05:22:17] Checking for apptainer binary...
[2026-03-03 05:22:17] which: no apptainer in ((null))
[2026-03-03 05:22:17] apptainer is not installed, using version from CVMFS
[2026-03-03 05:22:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 05:22:17] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot216/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-03 05:22:17] apptainer works
[2026-03-03 05:22:17] Set ATHENA_PROC_NUMBER=4
[2026-03-03 05:22:17] Set ATHENA_CORE_NUMBER=4
[2026-03-03 05:22:17] Starting ATLAS job with PandaID=7033813411
[2026-03-03 05:22:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot216/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 06:52:43]  *** The last 200 lines of the pilot log: ***
[2026-03-03 06:52:43]  is_tar=False
[2026-03-03 06:52:43]  lfn=log.48838610._001300.job.log.tgz.1
[2026-03-03 06:52:43]  mtime=0
[2026-03-03 06:52:43]  protocol_id=None
[2026-03-03 06:52:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 06:52:43]  replicas=None
[2026-03-03 06:52:43]  scope=mc23_13p6TeV
[2026-03-03 06:52:43]  status=None
[2026-03-03 06:52:43]  status_code=0
[2026-03-03 06:52:43]  storage_token=
[2026-03-03 06:52:43]  surl=/var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7033813411/log.48838610._001300.job.log.tgz.1
[2026-03-03 06:52:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/c5/log.48838610._001300.job.log.tgz.1
[2026-03-03 06:52:43]  workdir=None
[2026-03-03 06:52:43] ]
[2026-03-03 06:52:43] 2026-03-03 05:51:47,482 | INFO     | transferring file log.48838610._001300.job.log.tgz.1 from /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7033813411/log.48838610._001300.job.log.tgz.1 to /var/lib/
[2026-03-03 06:52:43] 2026-03-03 05:51:47,483 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7033813411/log.48838610._001300.job.log.tgz.1 /var/lib/boinc/var/slot216/slots/0/
[2026-03-03 06:52:43] 2026-03-03 05:51:47,502 | INFO     | adding to output.list: log.48838610._001300.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/c5/log.48838610._001300.job.log.tg
[2026-03-03 06:52:43] 2026-03-03 05:51:47,503 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 06:52:43] 2026-03-03 05:51:47,503 | INFO     | summary of transferred files:
[2026-03-03 06:52:43] 2026-03-03 05:51:47,503 | INFO     |  -- lfn=log.48838610._001300.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 06:52:43] 2026-03-03 05:51:47,503 | INFO     | stage-out finished correctly
[2026-03-03 06:52:43] 2026-03-03 05:51:47,608 | INFO     | monitor loop #389: job 0:7033813411 is in state 'finished'
[2026-03-03 06:52:43] 2026-03-03 05:51:47,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-03 06:52:43] 2026-03-03 05:51:48,239 | INFO     | time since job start (5359s) is within the limit (349056.0s)
[2026-03-03 06:52:43] 2026-03-03 05:51:50,112 | INFO     | monitor loop #390: job 0:7033813411 is in state 'finished'
[2026-03-03 06:52:43] 2026-03-03 05:51:50,112 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-03 06:52:43] 2026-03-03 05:51:50,243 | INFO     | time since job start (5361s) is within the limit (349056.0s)
[2026-03-03 06:52:43] 2026-03-03 05:51:50,984 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 06:52:43] 2026-03-03 05:51:51,317 | INFO     | job 7033813411 has state=finished
[2026-03-03 06:52:43] 2026-03-03 05:51:51,317 | INFO     | preparing for final server update for job 7033813411 in state='finished'
[2026-03-03 06:52:43] 2026-03-03 05:51:51,317 | INFO     | reading metadata from: /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7033813411/jobReport.json
[2026-03-03 06:52:43] 2026-03-03 05:51:51,319 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot216/slots/0/workernode_map.json
[2026-03-03 06:52:43] 2026-03-03 05:51:51,319 | INFO     | this job has now completed (state=finished)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,319 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,319 | INFO     | log transfer has been attempted: DONE
[2026-03-03 06:52:43] 2026-03-03 05:51:51,319 | INFO     | job 7033813411 has finished - writing final server update
[2026-03-03 06:52:43] 2026-03-03 05:51:51,320 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_18226/.job.ad'
[2026-03-03 06:52:43] 2026-03-03 05:51:51,320 | INFO     | total number of processed events: 400 (read)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,338 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7033813411/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,339 | INFO     | extracted standard info from prmon json
[2026-03-03 06:52:43] 2026-03-03 05:51:51,339 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 06:52:43] 2026-03-03 05:51:51,339 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 06:52:43] 2026-03-03 05:51:51,339 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 06:52:43] 2026-03-03 05:51:51,339 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 06:52:43] 2026-03-03 05:51:51,340 | INFO     | fitting pss+swap vs Time
[2026-03-03 06:52:43] 2026-03-03 05:51:51,340 | INFO     | sum of square deviations: 164765880.0
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | sum of deviations: -1447070243.0
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | mean x: 1772514514.0
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | mean y: 2354016.1481481483
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | intersect: 15569612288.886452
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | chi2: 0.001131288909456188
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | current memory leak: -8.78 B/s (using 81 data points, chi2=0.00)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | could have reported an average CPU frequency of 3619 MHz (6 samples)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | ..............................
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | . Timing measurements:
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | . get job = 0 s
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | . initial setup = 4 s
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | . payload setup = 4 s
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | . stage-in = 0 s
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | . payload execution = 5337 s
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | . stage-out = 0 s
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | . log creation = 0 s
[2026-03-03 06:52:43] 2026-03-03 05:51:51,341 | INFO     | ..............................
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | 
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | job summary report
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | --------------------------------------------------
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | PanDA job id: 7033813411
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | task id: 48838610
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | errors: (none)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | pilot state: finished 
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | transexitcode: 0
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | exeerrorcode: 0
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | exeerrordiag: 
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | exitcode: 0
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | exitmsg: OK
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | cpuconsumptiontime: 20560 s
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | nevents: 400
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | neventsw: 0
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | pid: 3732459
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | pgrp: 3732459
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | corecount: 4
[2026-03-03 06:52:43] 2026-03-03 05:51:51,391 | INFO     | event service: False
[2026-03-03 06:52:43] 2026-03-03 05:51:51,392 | INFO     | sizes: {0: 2281990, 1: 2282252, 11: 2282280, 5346: 2308777, 5347: 2317799, 5351: 2318177}
[2026-03-03 06:52:43] 2026-03-03 05:51:51,392 | INFO     | --------------------------------------------------
[2026-03-03 06:52:43] 2026-03-03 05:51:51,392 | INFO     | 
[2026-03-03 06:52:43] 2026-03-03 05:51:51,392 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot216/slots/0
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | job 7033813411 has completed (purged errors)
[2026-03-03 06:52:43] 2026-03-03 05:51:51,411 | INFO     | overall cleanup function is called
[2026-03-03 06:52:43] 2026-03-03 05:51:52,417 | INFO     | --- collectZombieJob: --- 10, [3732459]
[2026-03-03 06:52:43] 2026-03-03 05:51:52,417 | INFO     | zombie collector waiting for pid 3732459
[2026-03-03 06:52:43] 2026-03-03 05:51:52,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 06:52:43] 2026-03-03 05:51:52,417 | INFO     | collected zombie processes
[2026-03-03 06:52:43] 2026-03-03 05:51:52,418 | INFO     | will attempt to kill all subprocesses of pid=3732459
[2026-03-03 06:52:43] 2026-03-03 05:51:52,845 | INFO     | process IDs to be killed: [3732459] (in reverse order)
[2026-03-03 06:52:43] 2026-03-03 05:51:53,046 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 06:52:43] 2026-03-03 05:51:53,046 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 06:52:43] 2026-03-03 05:51:53,073 | INFO     | did not find any defunct processes belonging to 3732459
[2026-03-03 06:52:43] 2026-03-03 05:51:53,097 | INFO     | did not find any defunct processes belonging to 3732459
[2026-03-03 06:52:43] 2026-03-03 05:51:53,097 | INFO     | ready for new job
[2026-03-03 06:52:43] 2026-03-03 05:51:53,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 06:52:43] 2026-03-03 05:51:53,098 | INFO     | **************************************
[2026-03-03 06:52:43] 2026-03-03 05:51:53,098 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 06:52:43] 2026-03-03 05:51:53,098 | INFO     | **************************************
[2026-03-03 06:52:43] 2026-03-03 05:51:53,098 | INFO     | 
[2026-03-03 06:52:43] 2026-03-03 05:51:53,104 | INFO     | architecture information:
[2026-03-03 06:52:43] 2026-03-03 05:51:53,104 | INFO     | executing command: cat /etc/os-release
[2026-03-03 06:52:43] 2026-03-03 05:51:53,120 | INFO     | cat /etc/os-release:
[2026-03-03 06:52:43] NAME="CentOS Linux"
[2026-03-03 06:52:43] VERSION="7 (Core)"
[2026-03-03 06:52:43] ID="centos"
[2026-03-03 06:52:43] ID_LIKE="rhel fedora"
[2026-03-03 06:52:43] VERSION_ID="7"
[2026-03-03 06:52:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 06:52:43] ANSI_COLOR="0;31"
[2026-03-03 06:52:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 06:52:43] HOME_URL="https://www.centos.org/"
[2026-03-03 06:52:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 06:52:43] 
[2026-03-03 06:52:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 06:52:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 06:52:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 06:52:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 06:52:43] 
[2026-03-03 06:52:43] 2026-03-03 05:51:53,120 | INFO     | **************************************
[2026-03-03 06:52:43] 2026-03-03 05:51:53,623 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/0
[2026-03-03 06:52:43] 2026-03-03 05:51:53,638 | INFO     | sufficient remaining disk space (21471690752 B)
[2026-03-03 06:52:43] 2026-03-03 05:51:53,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 06:52:43] 2026-03-03 05:51:53,639 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 06:52:43] 2026-03-03 05:51:53,639 | INFO     | update_server=False
[2026-03-03 06:52:43] 2026-03-03 05:51:53,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 06:52:43] 2026-03-03 05:51:53,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 06:52:43] 2026-03-03 05:51:53,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 06:52:43] 2026-03-03 05:51:53,640 | INFO     | aborting loop
[2026-03-03 06:52:43] 2026-03-03 05:51:53,780 | INFO     | all job control threads have been joined
[2026-03-03 06:52:43] 2026-03-03 05:51:53,976 | INFO     | all payload control threads have been joined
[2026-03-03 06:52:43] 2026-03-03 05:51:54,476 | INFO     | all data control threads have been joined
[2026-03-03 06:52:43] 2026-03-03 05:51:54,644 | INFO     | [job] retrieve thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:54,645 | INFO     | [job] job monitor thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:54,671 | INFO     | [payload] failed_post thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:54,734 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:54,786 | INFO     | [job] control thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:54,981 | INFO     | [payload] control thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:55,255 | INFO     | [job] validate thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:55,283 | INFO     | [payload] validate_post thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:55,312 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:55,344 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:55,478 | INFO     | [data] control thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:55,481 | INFO     | [data] copytool_in thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:55,645 | INFO     | [data] copytool_out thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:51:56,400 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 06:52:43] 2026-03-03 05:51:57,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 06:52:43] 2026-03-03 05:51:57,406 | INFO     | [job] queue monitor thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:52:01,042 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:52:03,714 | INFO     | job.realtimelogging is not enabled
[2026-03-03 06:52:43] 2026-03-03 05:52:04,719 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 06:52:43] 2026-03-03 05:52:23,834 | INFO     | PID=3726691 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 06:52:43] 2026-03-03 05:52:23,835 | INFO     | .. there are 47 such processes running
[2026-03-03 06:52:43] 2026-03-03 05:52:23,835 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 06:52:43] 2026-03-03 05:52:23,835 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 06:52:43] 2026-03-03 05:52:23,835 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 06:52:43] 2026-03-03 05:52:24,096 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-03 06:52:43] 2026-03-03 05:52:37,549 | INFO     | [monitor] cgroup control has ended
[2026-03-03 06:52:43] 2026-03-03 05:52:37,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22532802877248)>', '<ExcThread(monitor, started 22532565776128)>']
[2026-03-03 06:52:43] 2026-03-03 05:52:37,894 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 06:52:43] 2026-03-03 05:52:37,895 | INFO     | [monitor] control thread has ended
[2026-03-03 06:52:43] 2026-03-03 05:52:42,879 | INFO     | all workflow threads have been joined
[2026-03-03 06:52:43] 2026-03-03 05:52:42,879 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 06:52:43] 2026-03-03 05:52:42,879 | INFO     | traces error code: 0
[2026-03-03 06:52:43] 2026-03-03 05:52:42,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 06:52:43] 2026-03-03 05:52:43,039 [wrapper] ==== pilot stdout END ====
[2026-03-03 06:52:43] 2026-03-03 05:52:43,041 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 06:52:43] 2026-03-03 05:52:43,043 [wrapper] pilotpid: 3726691
[2026-03-03 06:52:43] 2026-03-03 05:52:43,045 [wrapper] Pilot exit status: 0
[2026-03-03 06:52:43] 2026-03-03 05:52:43,053 [wrapper] pandaids: 7033813411
[2026-03-03 06:52:43] 2026-03-03 05:52:43,171 [wrapper] cleanup supervisor_pilot  190632 3726692
[2026-03-03 06:52:43] 2026-03-03 05:52:43,174 [wrapper] Test setup, not cleaning
[2026-03-03 06:52:43] 2026-03-03 05:52:43,177 [wrapper] apfmon messages muted
[2026-03-03 06:52:43] 2026-03-03 05:52:43,179 [wrapper] ==== wrapper stdout END ====
[2026-03-03 06:52:43] 2026-03-03 05:52:43,181 [wrapper] ==== wrapper stderr END ====
[2026-03-03 06:52:43]  *** Error codes and diagnostics ***
[2026-03-03 06:52:43]     "exeErrorCode": 0,
[2026-03-03 06:52:43]     "exeErrorDiag": "",
[2026-03-03 06:52:43]     "pilotErrorCode": 0,
[2026-03-03 06:52:43]     "pilotErrorDiag": "",
[2026-03-03 06:52:43]  *** Listing of results directory ***
[2026-03-03 06:52:43] total 464568
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc    584627 Feb 28 21:24 pilot3.tar.gz
[2026-03-03 06:52:43] -rwx------. 1 boinc boinc     36322 Feb 28 21:25 runpilot2-wrapper.sh
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc      5111 Feb 28 21:27 queuedata.json
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc       100 Mar  3 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 06:52:43] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 05:22 run_atlas
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc       105 Mar  3 05:22 job.xml
[2026-03-03 06:52:43] -rw-r--r--. 2 boinc boinc 270587251 Mar  3 05:22 EVNT.48343779._000051.pool.root.1
[2026-03-03 06:52:43] -rw-r--r--. 2 boinc boinc     15845 Mar  3 05:22 start_atlas.sh
[2026-03-03 06:52:43] drwxrwx--x. 2 boinc boinc      4096 Mar  3 05:22 shared
[2026-03-03 06:52:43] -rw-r--r--. 2 boinc boinc    597980 Mar  3 05:22 input.tar.gz
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc      6706 Mar  3 05:22 init_data.xml
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc         0 Mar  3 05:22 boinc_lockfile
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc      2579 Mar  3 05:22 pandaJob.out
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc    997730 Mar  3 05:22 agis_schedconf.cvmfs.json
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc   1512931 Mar  3 05:22 agis_ddmendpoints.agis.ALL.json
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc       444 Mar  3 05:22 workernode_map.json
[2026-03-03 06:52:43] drwx------. 5 boinc boinc      4096 Mar  3 05:22 pilot3
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc 199068192 Mar  3 06:51 HITS.48838610._001300.pool.root.1
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc       529 Mar  3 06:51 boinc_task_state.xml
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc        95 Mar  3 06:51 pilot_heartbeat.json
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc      1030 Mar  3 06:51 memory_monitor_summary.json
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc    282921 Mar  3 06:51 log.48838610._001300.job.log.tgz.1
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc      6354 Mar  3 06:51 heartbeat.json
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc      8192 Mar  3 06:52 boinc_mmap_file
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc        27 Mar  3 06:52 wrapper_checkpoint.txt
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc      4902 Mar  3 06:52 pilotlog.txt
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc    782327 Mar  3 06:52 log.48838610._001300.job.log.1
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc       357 Mar  3 06:52 output.list
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc       620 Mar  3 06:52 runtime_log
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc   1085440 Mar  3 06:52 result.tar.gz
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc      9221 Mar  3 06:52 runtime_log.err
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc       662 Mar  3 06:52 2eGODmS3fG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmN67KDmqZwQ8m.diag
[2026-03-03 06:52:43] -rw-r--r--. 1 boinc boinc     21405 Mar  3 06:52 stderr.txt
[2026-03-03 06:52:43] HITS file was successfully produced:
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc 199068192 Mar  3 06:51 shared/HITS.pool.root.1
[2026-03-03 06:52:43]  *** Contents of shared directory: ***
[2026-03-03 06:52:43] total 460320
[2026-03-03 06:52:43] -rw-r--r--. 2 boinc boinc 270587251 Mar  3 05:22 ATLAS.root_0
[2026-03-03 06:52:43] -rw-r--r--. 2 boinc boinc     15845 Mar  3 05:22 start_atlas.sh
[2026-03-03 06:52:43] -rw-r--r--. 2 boinc boinc    597980 Mar  3 05:22 input.tar.gz
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc 199068192 Mar  3 06:51 HITS.pool.root.1
[2026-03-03 06:52:43] -rw-------. 1 boinc boinc   1085440 Mar  3 06:52 result.tar.gz
06:52:44 (3722165): run_atlas exited; CPU time 20778.735844
06:52:44 (3722165): called boinc_finish(0)

</stderr_txt>
]]>

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