Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:59:15 (1258213): wrapper (7.7.26015): starting
08:59:15 (1258213): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 08:59:15] Arguments: --nthreads 4
[2026-03-03 08:59:15] Threads: 4
[2026-03-03 08:59:15] Checking for CVMFS
[2026-03-03 08:59:15] No cvmfs_config command found, will try listing directly
[2026-03-03 08:59:15] CVMFS is ok
[2026-03-03 08:59:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 08:59:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 08:59:15] Further information can be found at the LHC@home message board.
[2026-03-03 08:59:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 08:59:15] Checking for apptainer binary...
[2026-03-03 08:59:15] which: no apptainer in ((null))
[2026-03-03 08:59:15] apptainer is not installed, using version from CVMFS
[2026-03-03 08:59:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 08:59:15] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-03 08:59:15] apptainer works
[2026-03-03 08:59:15] Set ATHENA_PROC_NUMBER=4
[2026-03-03 08:59:15] Set ATHENA_CORE_NUMBER=4
[2026-03-03 08:59:15] Starting ATLAS job with PandaID=7035716065
[2026-03-03 08:59:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:31:40]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:31:40]  surl=/var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/log.48838416._009854.job.log.tgz.1
[2026-03-03 10:31:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/c5/log.48838416._009854.job.log.tgz.1
[2026-03-03 10:31:40]  workdir=None
[2026-03-03 10:31:40] ]
[2026-03-03 10:31:40] 2026-03-03 09:30:56,226 | INFO     | transferring file log.48838416._009854.job.log.tgz.1 from /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/log.48838416._009854.job.log.tgz.1 to /var/lib/b
[2026-03-03 10:31:40] 2026-03-03 09:30:56,226 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/log.48838416._009854.job.log.tgz.1 /var/lib/boinc/var/slot96/slots/0/lo
[2026-03-03 10:31:40] 2026-03-03 09:30:56,235 | INFO     | adding to output.list: log.48838416._009854.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/c5/log.48838416._009854.job.log.tg
[2026-03-03 10:31:40] 2026-03-03 09:30:56,236 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 10:31:40] 2026-03-03 09:30:56,236 | INFO     | summary of transferred files:
[2026-03-03 10:31:40] 2026-03-03 09:30:56,236 | INFO     |  -- lfn=log.48838416._009854.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 10:31:40] 2026-03-03 09:30:56,236 | INFO     | stage-out finished correctly
[2026-03-03 10:31:40] 2026-03-03 09:30:57,069 | WARNING  | process 1268458 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 10:31:40] 2026-03-03 09:30:57,069 | INFO     | using path: /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:31:40] 2026-03-03 09:30:57,070 | INFO     | using path: /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:31:40] 2026-03-03 09:30:57,070 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-03 10:31:40] 2026-03-03 09:30:57,070 | WARNING  | maxPSS not found in memory monitor output
[2026-03-03 10:31:40] 2026-03-03 09:30:57,070 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2079732 B
[2026-03-03 10:31:40] 2026-03-03 09:30:57,071 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16090 B
[2026-03-03 10:31:40] 2026-03-03 09:30:57,071 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/0
[2026-03-03 10:31:40] 2026-03-03 09:30:57,084 | INFO     | sufficient remaining disk space (22194159616 B)
[2026-03-03 10:31:40] 2026-03-03 09:30:57,084 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-03 10:31:40] 2026-03-03 09:30:57,085 | INFO     | size of work directory /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065: 2384259 B (within 5033164800 B limit)
[2026-03-03 10:31:40] 2026-03-03 09:30:57,085 | INFO     | pfn file=/var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/HITS.48838416._009854.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-03 10:31:40] 2026-03-03 09:30:57,085 | INFO     | total size of present files: 0 B (workdir size: 2384259 B)
[2026-03-03 10:31:40] 2026-03-03 09:30:57,085 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/HITS.48838416._009854.pool.root.1 since it does not exist
[2026-03-03 10:31:40] 2026-03-03 09:30:57,249 | INFO     | time since job start (5491s) is within the limit (349056.0s)
[2026-03-03 10:31:40] 2026-03-03 09:30:57,467 | INFO     | number of running child processes to parent process 1268458: 1
[2026-03-03 10:31:40] 2026-03-03 09:30:57,467 | INFO     | maximum number of monitored processes: 6
[2026-03-03 10:31:40] 2026-03-03 09:30:57,783 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 10:31:40] 2026-03-03 09:30:59,254 | INFO     | time since job start (5493s) is within the limit (349056.0s)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,685 | INFO     | job 7035716065 has state=finished
[2026-03-03 10:31:40] 2026-03-03 09:30:59,685 | INFO     | preparing for final server update for job 7035716065 in state='finished'
[2026-03-03 10:31:40] 2026-03-03 09:30:59,686 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/jobReport.json
[2026-03-03 10:31:40] 2026-03-03 09:30:59,687 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/0/workernode_map.json
[2026-03-03 10:31:40] 2026-03-03 09:30:59,688 | INFO     | this job has now completed (state=finished)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,688 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,688 | INFO     | log transfer has been attempted: DONE
[2026-03-03 10:31:40] 2026-03-03 09:30:59,688 | INFO     | job 7035716065 has finished - writing final server update
[2026-03-03 10:31:40] 2026-03-03 09:30:59,688 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_199353/.job.ad'
[2026-03-03 10:31:40] 2026-03-03 09:30:59,688 | INFO     | total number of processed events: 400 (read)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,706 | INFO     | using path: /var/lib/boinc/var/slot96/slots/0/PanDA_Pilot-7035716065/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,707 | INFO     | extracted standard info from prmon json
[2026-03-03 10:31:40] 2026-03-03 09:30:59,707 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:31:40] 2026-03-03 09:30:59,707 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:31:40] 2026-03-03 09:30:59,707 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:31:40] 2026-03-03 09:30:59,707 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:31:40] 2026-03-03 09:30:59,708 | INFO     | fitting pss+swap vs Time
[2026-03-03 10:31:40] 2026-03-03 09:30:59,708 | INFO     | sum of square deviations: 177275882.0
[2026-03-03 10:31:40] 2026-03-03 09:30:59,708 | INFO     | sum of deviations: 501761660.9999997
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | mean x: 1772527591.0
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | mean y: 2355840.3975903615
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | intersect: -5014606299.034823
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | chi2: 0.00029198298180734504
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | current memory leak: 2.83 B/s (using 83 data points, chi2=0.00)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | could have reported an average CPU frequency of 3618 MHz (7 samples)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | ..............................
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | . Timing measurements:
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | . get job = 0 s
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | . initial setup = 4 s
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | . payload setup = 4 s
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | . stage-in = 0 s
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | . payload execution = 5470 s
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | . stage-out = 0 s
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | . log creation = 0 s
[2026-03-03 10:31:40] 2026-03-03 09:30:59,709 | INFO     | ..............................
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | 
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | job summary report
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | --------------------------------------------------
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | PanDA job id: 7035716065
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | task id: 48838416
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | errors: (none)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | pilot state: finished 
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | transexitcode: 0
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | exeerrorcode: 0
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | exeerrordiag: 
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | exitcode: 0
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | exitmsg: OK
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | cpuconsumptiontime: 21131 s
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | nevents: 400
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | neventsw: 0
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | pid: 1268458
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | pgrp: 1268458
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | corecount: 4
[2026-03-03 10:31:40] 2026-03-03 09:30:59,758 | INFO     | event service: False
[2026-03-03 10:31:40] 2026-03-03 09:30:59,759 | INFO     | sizes: {0: 2282028, 1: 2282290, 11: 2282318, 5478: 2308931, 5479: 2317951, 5481: 2318035, 5482: 2318357}
[2026-03-03 10:31:40] 2026-03-03 09:30:59,759 | INFO     | --------------------------------------------------
[2026-03-03 10:31:40] 2026-03-03 09:30:59,759 | INFO     | 
[2026-03-03 10:31:40] 2026-03-03 09:30:59,759 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/0
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | job 7035716065 has completed (purged errors)
[2026-03-03 10:31:40] 2026-03-03 09:30:59,777 | INFO     | overall cleanup function is called
[2026-03-03 10:31:40] 2026-03-03 09:31:00,783 | INFO     | --- collectZombieJob: --- 10, [1268458]
[2026-03-03 10:31:40] 2026-03-03 09:31:00,783 | INFO     | zombie collector waiting for pid 1268458
[2026-03-03 10:31:40] 2026-03-03 09:31:00,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:31:40] 2026-03-03 09:31:00,783 | INFO     | collected zombie processes
[2026-03-03 10:31:40] 2026-03-03 09:31:00,783 | INFO     | will attempt to kill all subprocesses of pid=1268458
[2026-03-03 10:31:40] 2026-03-03 09:31:01,161 | INFO     | process IDs to be killed: [1268458] (in reverse order)
[2026-03-03 10:31:40] 2026-03-03 09:31:01,347 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:31:40] 2026-03-03 09:31:01,347 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:31:40] 2026-03-03 09:31:01,372 | INFO     | did not find any defunct processes belonging to 1268458
[2026-03-03 10:31:40] 2026-03-03 09:31:01,395 | INFO     | did not find any defunct processes belonging to 1268458
[2026-03-03 10:31:40] 2026-03-03 09:31:01,396 | INFO     | ready for new job
[2026-03-03 10:31:40] 2026-03-03 09:31:01,396 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:31:40] 2026-03-03 09:31:01,397 | INFO     | **************************************
[2026-03-03 10:31:40] 2026-03-03 09:31:01,399 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:31:40] 2026-03-03 09:31:01,399 | INFO     | **************************************
[2026-03-03 10:31:40] 2026-03-03 09:31:01,399 | INFO     | 
[2026-03-03 10:31:40] 2026-03-03 09:31:01,405 | INFO     | architecture information:
[2026-03-03 10:31:40] 2026-03-03 09:31:01,405 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:31:40] 2026-03-03 09:31:01,419 | INFO     | cat /etc/os-release:
[2026-03-03 10:31:40] NAME="CentOS Linux"
[2026-03-03 10:31:40] VERSION="7 (Core)"
[2026-03-03 10:31:40] ID="centos"
[2026-03-03 10:31:40] ID_LIKE="rhel fedora"
[2026-03-03 10:31:40] VERSION_ID="7"
[2026-03-03 10:31:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:31:40] ANSI_COLOR="0;31"
[2026-03-03 10:31:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:31:40] HOME_URL="https://www.centos.org/"
[2026-03-03 10:31:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:31:40] 
[2026-03-03 10:31:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:31:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:31:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:31:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:31:40] 
[2026-03-03 10:31:40] 2026-03-03 09:31:01,419 | INFO     | **************************************
[2026-03-03 10:31:40] 2026-03-03 09:31:01,922 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/0
[2026-03-03 10:31:40] 2026-03-03 09:31:01,939 | INFO     | sufficient remaining disk space (22430089216 B)
[2026-03-03 10:31:40] 2026-03-03 09:31:01,939 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:31:40] 2026-03-03 09:31:01,939 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:31:40] 2026-03-03 09:31:01,939 | INFO     | update_server=False
[2026-03-03 10:31:40] 2026-03-03 09:31:01,939 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:31:40] 2026-03-03 09:31:01,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:31:40] 2026-03-03 09:31:01,940 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:31:40] 2026-03-03 09:31:01,940 | INFO     | aborting loop
[2026-03-03 10:31:40] 2026-03-03 09:31:01,950 | INFO     | all data control threads have been joined
[2026-03-03 10:31:40] 2026-03-03 09:31:02,746 | INFO     | all job control threads have been joined
[2026-03-03 10:31:40] 2026-03-03 09:31:02,838 | INFO     | all payload control threads have been joined
[2026-03-03 10:31:40] 2026-03-03 09:31:02,944 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:02,945 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:02,956 | INFO     | [data] control thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:03,752 | INFO     | [job] control thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:03,813 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:03,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:31:40] 2026-03-03 09:31:03,841 | INFO     | [job] validate thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:03,843 | INFO     | [payload] control thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:03,944 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:03,945 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:03,960 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:04,029 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:04,046 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:04,115 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:04,505 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:04,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:31:40] 2026-03-03 09:31:05,770 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:07,842 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:31:40] 2026-03-03 09:31:32,769 | INFO     | PID=1262742 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 10:31:40] 2026-03-03 09:31:32,769 | INFO     | .. there are 46 such processes running
[2026-03-03 10:31:40] 2026-03-03 09:31:32,769 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:31:40] 2026-03-03 09:31:32,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:31:40] 2026-03-03 09:31:32,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:31:40] 2026-03-03 09:31:34,612 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:31:40] 2026-03-03 09:31:35,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22671261669184)>', '<ExcThread(monitor, started 22671026046720)>']
[2026-03-03 10:31:40] 2026-03-03 09:31:35,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:31:40] 2026-03-03 09:31:35,784 | INFO     | [monitor] control thread has ended
[2026-03-03 10:31:40] 2026-03-03 09:31:40,209 | INFO     | all workflow threads have been joined
[2026-03-03 10:31:40] 2026-03-03 09:31:40,209 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:31:40] 2026-03-03 09:31:40,209 | INFO     | traces error code: 0
[2026-03-03 10:31:40] 2026-03-03 09:31:40,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:31:40] 2026-03-03 09:31:40,330 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:31:40] 2026-03-03 09:31:40,332 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:31:40] 2026-03-03 09:31:40,334 [wrapper] pilotpid: 1262742
[2026-03-03 10:31:40] 2026-03-03 09:31:40,336 [wrapper] Pilot exit status: 0
[2026-03-03 10:31:40] 2026-03-03 09:31:40,343 [wrapper] pandaids: 7035716065
[2026-03-03 10:31:40] 2026-03-03 09:31:40,448 [wrapper] cleanup supervisor_pilot 2013296 1262743
[2026-03-03 10:31:40] 2026-03-03 09:31:40,450 [wrapper] Test setup, not cleaning
[2026-03-03 10:31:40] 2026-03-03 09:31:40,453 [wrapper] apfmon messages muted
[2026-03-03 10:31:40] 2026-03-03 09:31:40,455 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:31:40] 2026-03-03 09:31:40,457 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:31:40]  *** Error codes and diagnostics ***
[2026-03-03 10:31:40]     "exeErrorCode": 0,
[2026-03-03 10:31:40]     "exeErrorDiag": "",
[2026-03-03 10:31:40]     "pilotErrorCode": 0,
[2026-03-03 10:31:40]     "pilotErrorDiag": "",
[2026-03-03 10:31:40]  *** Listing of results directory ***
[2026-03-03 10:31:40] total 519872
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc    584627 Mar  2 00:37 pilot3.tar.gz
[2026-03-03 10:31:40] -rwx------. 1 boinc boinc     36322 Mar  2 00:37 runpilot2-wrapper.sh
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc      5111 Mar  2 00:37 queuedata.json
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc       100 Mar  3 08:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:31:40] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 08:59 run_atlas
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc       105 Mar  3 08:59 job.xml
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc      6706 Mar  3 08:59 init_data.xml
[2026-03-03 10:31:40] -rw-r--r--. 2 boinc boinc 289136279 Mar  3 08:59 EVNT.48220085._000384.pool.root.1
[2026-03-03 10:31:40] -rw-r--r--. 2 boinc boinc     15845 Mar  3 08:59 start_atlas.sh
[2026-03-03 10:31:40] drwxrwx--x. 2 boinc boinc      4096 Mar  3 08:59 shared
[2026-03-03 10:31:40] -rw-r--r--. 2 boinc boinc    597955 Mar  3 08:59 input.tar.gz
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc         0 Mar  3 08:59 boinc_lockfile
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc      2567 Mar  3 08:59 pandaJob.out
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc    998412 Mar  3 08:59 agis_schedconf.cvmfs.json
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc   1512931 Mar  3 08:59 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc       444 Mar  3 08:59 workernode_map.json
[2026-03-03 10:31:40] drwx------. 5 boinc boinc      4096 Mar  3 08:59 pilot3
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc 237131565 Mar  3 10:30 HITS.48838416._009854.pool.root.1
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc       529 Mar  3 10:30 boinc_task_state.xml
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc      1030 Mar  3 10:30 memory_monitor_summary.json
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc    271842 Mar  3 10:30 log.48838416._009854.job.log.tgz.1
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc      6347 Mar  3 10:30 heartbeat.json
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc      8192 Mar  3 10:31 boinc_mmap_file
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc        27 Mar  3 10:31 wrapper_checkpoint.txt
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc        95 Mar  3 10:31 pilot_heartbeat.json
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc      4829 Mar  3 10:31 pilotlog.txt
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc    802575 Mar  3 10:31 log.48838416._009854.job.log.1
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc       357 Mar  3 10:31 output.list
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc       620 Mar  3 10:31 runtime_log
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc   1095680 Mar  3 10:31 result.tar.gz
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc      9204 Mar  3 10:31 runtime_log.err
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc       662 Mar  3 10:31 qGHKDmmW5G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmS29KDmQze3Ro.diag
[2026-03-03 10:31:40] -rw-r--r--. 1 boinc boinc     22542 Mar  3 10:31 stderr.txt
[2026-03-03 10:31:40] HITS file was successfully produced:
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc 237131565 Mar  3 10:30 shared/HITS.pool.root.1
[2026-03-03 10:31:40]  *** Contents of shared directory: ***
[2026-03-03 10:31:40] total 515616
[2026-03-03 10:31:40] -rw-r--r--. 2 boinc boinc 289136279 Mar  3 08:59 ATLAS.root_0
[2026-03-03 10:31:40] -rw-r--r--. 2 boinc boinc     15845 Mar  3 08:59 start_atlas.sh
[2026-03-03 10:31:40] -rw-r--r--. 2 boinc boinc    597955 Mar  3 08:59 input.tar.gz
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc 237131565 Mar  3 10:30 HITS.pool.root.1
[2026-03-03 10:31:40] -rw-------. 1 boinc boinc   1095680 Mar  3 10:31 result.tar.gz
10:31:42 (1258213): run_atlas exited; CPU time 21361.538740
10:31:42 (1258213): called boinc_finish(0)

</stderr_txt>
]]>

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