Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:46:48 (186556): wrapper (7.7.26015): starting
11:46:48 (186556): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 11:46:48] Arguments: --nthreads 4
[2026-03-02 11:46:48] Threads: 4
[2026-03-02 11:46:48] Checking for CVMFS
[2026-03-02 11:46:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 11:46:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 11:46:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 11:46:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 11:46:48] 2.9.2.0 3007 903 81820 156803 2 50 27951238 36864001 0 130560 0 516256 99.989 33767 19012 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 11:46:48] CVMFS is ok
[2026-03-02 11:46:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 11:46:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 11:46:48] Further information can be found at the LHC@home message board.
[2026-03-02 11:46:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 11:46:48] Checking for apptainer binary...
[2026-03-02 11:46:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 11:46:48] Running /usr/bin/apptainer --version
[2026-03-02 11:46:48] apptainer version 1.4.1-1.1
[2026-03-02 11:46:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 11:46:48] atlasA215b
[2026-03-02 11:46:48] apptainer works
[2026-03-02 11:46:48] Set ATHENA_PROC_NUMBER=4
[2026-03-02 11:46:48] Set ATHENA_CORE_NUMBER=4
[2026-03-02 11:46:48] Starting ATLAS job with PandaID=7035659323
[2026-03-02 11:46:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 13:14:14]  *** The last 200 lines of the pilot log: ***
[2026-03-02 13:14:14] 2026-03-02 12:13:07,750 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 13:14:14] 2026-03-02 12:13:07,750 | INFO     | collected zombie processes
[2026-03-02 13:14:14] 2026-03-02 12:13:07,750 | INFO     | will attempt to kill all subprocesses of pid=195163
[2026-03-02 13:14:14] 2026-03-02 12:13:07,790 | INFO     | process IDs to be killed: [195163] (in reverse order)
[2026-03-02 13:14:14] 2026-03-02 12:13:07,823 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 13:14:14] 2026-03-02 12:13:07,824 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 13:14:14] 2026-03-02 12:13:07,825 | INFO     | did not find any defunct processes belonging to 195163
[2026-03-02 13:14:14] 2026-03-02 12:13:07,826 | INFO     | did not find any defunct processes belonging to 195163
[2026-03-02 13:14:14] 2026-03-02 12:13:07,826 | INFO     | ready for new job
[2026-03-02 13:14:14] 2026-03-02 12:13:07,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 13:14:14] 2026-03-02 12:13:07,827 | INFO     | **************************************
[2026-03-02 13:14:14] 2026-03-02 12:13:07,827 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 13:14:14] 2026-03-02 12:13:07,827 | INFO     | **************************************
[2026-03-02 13:14:14] 2026-03-02 12:13:07,827 | INFO     | 
[2026-03-02 13:14:14] 2026-03-02 12:13:07,828 | INFO     | architecture information:
[2026-03-02 13:14:14] 2026-03-02 12:13:07,828 | INFO     | executing command: cat /etc/os-release
[2026-03-02 13:14:14] 2026-03-02 12:13:07,843 | INFO     | cat /etc/os-release:
[2026-03-02 13:14:14] NAME="CentOS Linux"
[2026-03-02 13:14:14] VERSION="7 (Core)"
[2026-03-02 13:14:14] ID="centos"
[2026-03-02 13:14:14] ID_LIKE="rhel fedora"
[2026-03-02 13:14:14] VERSION_ID="7"
[2026-03-02 13:14:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 13:14:14] ANSI_COLOR="0;31"
[2026-03-02 13:14:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 13:14:14] HOME_URL="https://www.centos.org/"
[2026-03-02 13:14:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 13:14:14] 
[2026-03-02 13:14:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 13:14:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 13:14:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 13:14:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 13:14:14] 
[2026-03-02 13:14:14] 2026-03-02 12:13:07,843 | INFO     | **************************************
[2026-03-02 13:14:14] 2026-03-02 12:13:08,346 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 13:14:14] 2026-03-02 12:13:08,365 | INFO     | sufficient remaining disk space (330978820096 B)
[2026-03-02 13:14:14] 2026-03-02 12:13:08,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 13:14:14] 2026-03-02 12:13:08,365 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 13:14:14] 2026-03-02 12:13:08,365 | INFO     | update_server=False
[2026-03-02 13:14:14] 2026-03-02 12:13:08,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 13:14:14] 2026-03-02 12:13:08,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 13:14:14] 2026-03-02 12:13:08,365 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-02 13:14:14] 2026-03-02 12:13:08,365 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 13:14:14] 2026-03-02 12:13:08,366 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 13:14:14] 2026-03-02 12:13:08,366 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 13:14:14] 2026-03-02 12:13:08,522 | INFO     | all payload control threads have been joined
[2026-03-02 13:14:14] 2026-03-02 12:13:08,692 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 13:14:14] 2026-03-02 12:13:08,692 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 13:14:14] 2026-03-02 12:13:08,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 13:14:14] 2026-03-02 12:13:08,692 | INFO     | will abort loop
[2026-03-02 13:14:14] 2026-03-02 12:13:08,805 | INFO     | all data control threads have been joined
[2026-03-02 13:14:14] 2026-03-02 12:13:09,066 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 13:14:14] 2026-03-02 12:13:09,140 | INFO     | all job control threads have been joined
[2026-03-02 13:14:14] 2026-03-02 12:13:09,371 | INFO     | [job] queue monitor thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:09,371 | INFO     | [job] retrieve thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:09,526 | INFO     | [payload] control thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:09,595 | INFO     | [payload] validate_post thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:09,698 | INFO     | [job] job monitor thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:09,811 | INFO     | [data] control thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:09,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 13:14:14] 2026-03-02 12:13:10,145 | INFO     | [job] control thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:10,344 | INFO     | [job] validate thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:10,377 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:10,406 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:10,408 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:10,567 | INFO     | [data] copytool_in thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:10,650 | INFO     | [payload] failed_post thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:10,798 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:11,073 | INFO     | [data] copytool_out thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:13:13,933 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 13:14:14] 2026-03-02 12:14:08,054 | INFO     | [monitor] cgroup control has ended
[2026-03-02 13:14:14] 2026-03-02 12:14:09,189 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530914535232)>', '<ExcThread(monitor, started 140529945782016)>']
[2026-03-02 13:14:14] 2026-03-02 12:14:09,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 13:14:14] 2026-03-02 12:14:09,690 | INFO     | [monitor] control thread has ended
[2026-03-02 13:14:14] 2026-03-02 12:14:14,215 | INFO     | all workflow threads have been joined
[2026-03-02 13:14:14] 2026-03-02 12:14:14,215 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 13:14:14] 2026-03-02 12:14:14,215 | INFO     | traces error code: 0
[2026-03-02 13:14:14] 2026-03-02 12:14:14,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 13:14:14] 2026-03-02 12:14:14,295 [wrapper] ==== pilot stdout END ====
[2026-03-02 13:14:14] 2026-03-02 12:14:14,300 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 13:14:14] 2026-03-02 12:14:14,304 [wrapper] pilotpid: 190664
[2026-03-02 13:14:14] 2026-03-02 12:14:14,308 [wrapper] Pilot exit status: 0
[2026-03-02 13:14:14] 2026-03-02 12:14:14,320 [wrapper] pandaids: 7035659323
[2026-03-02 13:14:14] 2026-03-02 12:14:14,344 [wrapper] cleanup supervisor_pilot  200870 190665
[2026-03-02 13:14:14] 2026-03-02 12:14:14,348 [wrapper] Test setup, not cleaning
[2026-03-02 13:14:14] 2026-03-02 12:14:14,352 [wrapper] apfmon messages muted
[2026-03-02 13:14:14] 2026-03-02 12:14:14,356 [wrapper] ==== wrapper stdout END ====
[2026-03-02 13:14:14] 2026-03-02 12:14:14,360 [wrapper] ==== wrapper stderr END ====
[2026-03-02 13:14:14]  *** Error codes and diagnostics ***
[2026-03-02 13:14:14]     "exeErrorCode": 0,
[2026-03-02 13:14:14]     "exeErrorDiag": "",
[2026-03-02 13:14:14]     "pilotErrorCode": 0,
[2026-03-02 13:14:14]     "pilotErrorDiag": "",
[2026-03-02 13:14:14]  *** Listing of results directory ***
[2026-03-02 13:14:14] total 509520
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc    584627 Mar  1 23:23 pilot3.tar.gz
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc      5111 Mar  1 23:23 queuedata.json
[2026-03-02 13:14:14] -rwx------ 1 boinc boinc     36322 Mar  1 23:23 runpilot2-wrapper.sh
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc       100 Mar  2 11:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 13:14:14] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 11:46 run_atlas
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc       105 Mar  2 11:46 job.xml
[2026-03-02 13:14:14] -rw-r--r-- 2 boinc boinc 285225736 Mar  2 11:46 EVNT.48220101._000202.pool.root.1
[2026-03-02 13:14:14] -rw-r--r-- 2 boinc boinc    597968 Mar  2 11:46 input.tar.gz
[2026-03-02 13:14:14] -rw-r--r-- 2 boinc boinc     15845 Mar  2 11:46 start_atlas.sh
[2026-03-02 13:14:14] drwxrwx--x 2 boinc boinc      4096 Mar  2 11:46 shared
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc         0 Mar  2 11:46 boinc_setup_complete
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc      6372 Mar  2 11:46 init_data.xml
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc         0 Mar  2 11:46 boinc_lockfile
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc      2579 Mar  2 11:46 pandaJob.out
[2026-03-02 13:14:14] -rw------- 1 boinc boinc    998143 Mar  2 11:46 agis_schedconf.cvmfs.json
[2026-03-02 13:14:14] -rw------- 1 boinc boinc   1513015 Mar  2 11:46 agis_ddmendpoints.agis.ALL.json
[2026-03-02 13:14:14] -rw------- 1 boinc boinc       424 Mar  2 11:47 workernode_map.json
[2026-03-02 13:14:14] drwx------ 5 boinc boinc      4096 Mar  2 11:47 pilot3
[2026-03-02 13:14:14] -rw------- 1 boinc boinc        95 Mar  2 13:12 pilot_heartbeat.json
[2026-03-02 13:14:14] -rw------- 1 boinc boinc 230574798 Mar  2 13:12 HITS.48838432._005358.pool.root.1
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc       529 Mar  2 13:12 boinc_task_state.xml
[2026-03-02 13:14:14] -rw------- 1 boinc boinc      1018 Mar  2 13:12 memory_monitor_summary.json
[2026-03-02 13:14:14] -rw------- 1 boinc boinc    258611 Mar  2 13:13 log.48838432._005358.job.log.tgz.1
[2026-03-02 13:14:14] -rw------- 1 boinc boinc      6317 Mar  2 13:13 heartbeat.json
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc        27 Mar  2 13:13 wrapper_checkpoint.txt
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc      8192 Mar  2 13:13 boinc_mmap_file
[2026-03-02 13:14:14] -rw------- 1 boinc boinc      4738 Mar  2 13:14 pilotlog.txt
[2026-03-02 13:14:14] -rw------- 1 boinc boinc    753520 Mar  2 13:14 log.48838432._005358.job.log.1
[2026-03-02 13:14:14] -rw------- 1 boinc boinc       357 Mar  2 13:14 output.list
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc       620 Mar  2 13:14 runtime_log
[2026-03-02 13:14:14] -rw------- 1 boinc boinc   1034240 Mar  2 13:14 result.tar.gz
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc      8916 Mar  2 13:14 runtime_log.err
[2026-03-02 13:14:14] -rw------- 1 boinc boinc       661 Mar  2 13:14 6a1MDmaN4G9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrlBLDmd9eyVn.diag
[2026-03-02 13:14:14] -rw-r--r-- 1 boinc boinc     10554 Mar  2 13:14 stderr.txt
[2026-03-02 13:14:14] HITS file was successfully produced:
[2026-03-02 13:14:14] -rw------- 1 boinc boinc 230574798 Mar  2 13:12 shared/HITS.pool.root.1
[2026-03-02 13:14:14]  *** Contents of shared directory: ***
[2026-03-02 13:14:14] total 505336
[2026-03-02 13:14:14] -rw-r--r-- 2 boinc boinc 285225736 Mar  2 11:46 ATLAS.root_0
[2026-03-02 13:14:14] -rw-r--r-- 2 boinc boinc    597968 Mar  2 11:46 input.tar.gz
[2026-03-02 13:14:14] -rw-r--r-- 2 boinc boinc     15845 Mar  2 11:46 start_atlas.sh
[2026-03-02 13:14:14] -rw------- 1 boinc boinc 230574798 Mar  2 13:12 HITS.pool.root.1
[2026-03-02 13:14:14] -rw------- 1 boinc boinc   1034240 Mar  2 13:14 result.tar.gz
13:14:16 (186556): run_atlas exited; CPU time 19624.001508
13:14:16 (186556): called boinc_finish(0)

</stderr_txt>
]]>

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