Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:14:38 (201227): wrapper (7.7.26015): starting
13:14:38 (201227): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 13:14:38] Arguments: --nthreads 4
[2026-03-02 13:14:38] Threads: 4
[2026-03-02 13:14:38] Checking for CVMFS
[2026-03-02 13:14:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 13:14:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 13:14:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 13:14:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 13:14:39] 2.9.2.0 3007 991 82288 156805 2 50 27968089 36864000 0 130560 0 556243 99.988 36887 19465 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 13:14:39] CVMFS is ok
[2026-03-02 13:14:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 13:14:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 13:14:39] Further information can be found at the LHC@home message board.
[2026-03-02 13:14:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 13:14:39] Checking for apptainer binary...
[2026-03-02 13:14:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 13:14:39] Running /usr/bin/apptainer --version
[2026-03-02 13:14:39] apptainer version 1.4.1-1.1
[2026-03-02 13:14:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 13:14:39] atlasA215b
[2026-03-02 13:14:39] apptainer works
[2026-03-02 13:14:39] Set ATHENA_PROC_NUMBER=4
[2026-03-02 13:14:39] Set ATHENA_CORE_NUMBER=4
[2026-03-02 13:14:39] Starting ATLAS job with PandaID=7035605182
[2026-03-02 13:14:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 16:33:26]  *** The last 200 lines of the pilot log: ***
[2026-03-02 16:33:26] 2026-03-02 15:32:54,587 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 16:33:26] 2026-03-02 15:32:54,587 | INFO     | job 7035605182 has completed (purged errors)
[2026-03-02 16:33:26] 2026-03-02 15:32:54,587 | INFO     | overall cleanup function is called
[2026-03-02 16:33:26] 2026-03-02 15:32:55,593 | INFO     | --- collectZombieJob: --- 10, [209844]
[2026-03-02 16:33:26] 2026-03-02 15:32:55,594 | INFO     | zombie collector waiting for pid 209844
[2026-03-02 16:33:26] 2026-03-02 15:32:55,594 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 16:33:26] 2026-03-02 15:32:55,594 | INFO     | collected zombie processes
[2026-03-02 16:33:26] 2026-03-02 15:32:55,594 | INFO     | will attempt to kill all subprocesses of pid=209844
[2026-03-02 16:33:26] 2026-03-02 15:32:55,637 | INFO     | process IDs to be killed: [209844] (in reverse order)
[2026-03-02 16:33:26] 2026-03-02 15:32:55,671 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 16:33:26] 2026-03-02 15:32:55,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 16:33:26] 2026-03-02 15:32:55,673 | INFO     | did not find any defunct processes belonging to 209844
[2026-03-02 16:33:26] 2026-03-02 15:32:55,674 | INFO     | did not find any defunct processes belonging to 209844
[2026-03-02 16:33:26] 2026-03-02 15:32:55,674 | INFO     | ready for new job
[2026-03-02 16:33:26] 2026-03-02 15:32:55,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 16:33:26] 2026-03-02 15:32:55,675 | INFO     | **************************************
[2026-03-02 16:33:26] 2026-03-02 15:32:55,675 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 16:33:26] 2026-03-02 15:32:55,675 | INFO     | **************************************
[2026-03-02 16:33:26] 2026-03-02 15:32:55,675 | INFO     | 
[2026-03-02 16:33:26] 2026-03-02 15:32:55,675 | INFO     | architecture information:
[2026-03-02 16:33:26] 2026-03-02 15:32:55,676 | INFO     | executing command: cat /etc/os-release
[2026-03-02 16:33:26] 2026-03-02 15:32:55,691 | INFO     | cat /etc/os-release:
[2026-03-02 16:33:26] NAME="CentOS Linux"
[2026-03-02 16:33:26] VERSION="7 (Core)"
[2026-03-02 16:33:26] ID="centos"
[2026-03-02 16:33:26] ID_LIKE="rhel fedora"
[2026-03-02 16:33:26] VERSION_ID="7"
[2026-03-02 16:33:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 16:33:26] ANSI_COLOR="0;31"
[2026-03-02 16:33:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 16:33:26] HOME_URL="https://www.centos.org/"
[2026-03-02 16:33:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 16:33:26] 
[2026-03-02 16:33:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 16:33:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 16:33:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 16:33:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 16:33:26] 
[2026-03-02 16:33:26] 2026-03-02 15:32:55,691 | INFO     | **************************************
[2026-03-02 16:33:26] 2026-03-02 15:32:56,194 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 16:33:26] 2026-03-02 15:32:56,212 | INFO     | sufficient remaining disk space (330918002688 B)
[2026-03-02 16:33:26] 2026-03-02 15:32:56,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 16:33:26] 2026-03-02 15:32:56,212 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 16:33:26] 2026-03-02 15:32:56,212 | INFO     | update_server=False
[2026-03-02 16:33:26] 2026-03-02 15:32:56,212 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 16:33:26] 2026-03-02 15:32:56,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 16:33:26] 2026-03-02 15:32:56,213 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 16:33:26] 2026-03-02 15:32:56,773 | INFO     | all payload control threads have been joined
[2026-03-02 16:33:26] 2026-03-02 15:32:56,809 | INFO     | all data control threads have been joined
[2026-03-02 16:33:26] 2026-03-02 15:32:57,218 | INFO     | [job] retrieve thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:57,218 | INFO     | [job] queue monitor thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:57,400 | INFO     | [payload] failed_post thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:57,579 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:57,778 | INFO     | [payload] control thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:57,815 | INFO     | [data] control thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:57,901 | INFO     | all job control threads have been joined
[2026-03-02 16:33:26] 2026-03-02 15:32:57,961 | INFO     | [payload] validate_post thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:58,103 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:58,206 | INFO     | [job] validate thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:58,218 | INFO     | [data] copytool_out thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:58,332 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:58,597 | INFO     | [data] copytool_in thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:58,900 | WARNING  | process 209844 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 16:33:26] 2026-03-02 15:32:58,907 | INFO     | [job] control thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:32:58,932 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 16:33:26] 2026-03-02 15:32:58,970 | INFO     | number of running child processes to parent process 209844: 1
[2026-03-02 16:33:26] 2026-03-02 15:32:58,971 | INFO     | maximum number of monitored processes: 6
[2026-03-02 16:33:26] 2026-03-02 15:32:58,971 | INFO     | aborting job monitoring since job object (job id=7035605182) has expired
[2026-03-02 16:33:26] 2026-03-02 15:32:58,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 16:33:26] 2026-03-02 15:32:58,971 | INFO     | will abort loop
[2026-03-02 16:33:26] 2026-03-02 15:32:59,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 16:33:26] 2026-03-02 15:32:59,976 | INFO     | [job] job monitor thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:33:03,499 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:33:06,302 | INFO     | job.realtimelogging is not enabled
[2026-03-02 16:33:26] 2026-03-02 15:33:06,682 | INFO     | [monitor] cgroup control has ended
[2026-03-02 16:33:26] 2026-03-02 15:33:07,308 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 16:33:26] 2026-03-02 15:33:08,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139743734191936)>', '<ExcThread(monitor, started 139742691698432)>']
[2026-03-02 16:33:26] 2026-03-02 15:33:13,099 | INFO     | all workflow threads have been joined
[2026-03-02 16:33:26] 2026-03-02 15:33:13,099 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 16:33:26] 2026-03-02 15:33:13,100 | INFO     | traces error code: 0
[2026-03-02 16:33:26] 2026-03-02 15:33:13,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 16:33:26] 2026-03-02 15:33:25,895 | INFO     | PID=205337 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 16:33:26] 2026-03-02 15:33:25,895 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 16:33:26] 2026-03-02 15:33:25,895 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 16:33:26] 2026-03-02 15:33:25,895 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 16:33:26] 2026-03-02 15:33:25,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 16:33:26] 2026-03-02 15:33:25,895 | INFO     | [monitor] control thread has ended
[2026-03-02 16:33:26] 2026-03-02 15:33:25,969 [wrapper] ==== pilot stdout END ====
[2026-03-02 16:33:26] 2026-03-02 15:33:25,974 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 16:33:26] 2026-03-02 15:33:25,978 [wrapper] pilotpid: 205337
[2026-03-02 16:33:26] 2026-03-02 15:33:25,982 [wrapper] Pilot exit status: 0
[2026-03-02 16:33:26] 2026-03-02 15:33:25,993 [wrapper] pandaids: 7035605182
[2026-03-02 16:33:26] 2026-03-02 15:33:26,015 [wrapper] cleanup supervisor_pilot  216436 205338
[2026-03-02 16:33:26] 2026-03-02 15:33:26,019 [wrapper] Test setup, not cleaning
[2026-03-02 16:33:26] 2026-03-02 15:33:26,023 [wrapper] apfmon messages muted
[2026-03-02 16:33:26] 2026-03-02 15:33:26,027 [wrapper] ==== wrapper stdout END ====
[2026-03-02 16:33:26] 2026-03-02 15:33:26,031 [wrapper] ==== wrapper stderr END ====
[2026-03-02 16:33:26]  *** Error codes and diagnostics ***
[2026-03-02 16:33:26]     "exeErrorCode": 0,
[2026-03-02 16:33:26]     "exeErrorDiag": "",
[2026-03-02 16:33:26]     "pilotErrorCode": 0,
[2026-03-02 16:33:26]     "pilotErrorDiag": "",
[2026-03-02 16:33:26]  *** Listing of results directory ***
[2026-03-02 16:33:26] total 568428
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc    584627 Mar  1 22:22 pilot3.tar.gz
[2026-03-02 16:33:26] -rwx------ 1 boinc boinc     36322 Mar  1 22:24 runpilot2-wrapper.sh
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc      5111 Mar  1 22:26 queuedata.json
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc       100 Mar  2 13:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 16:33:26] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 13:14 run_atlas
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc       105 Mar  2 13:14 job.xml
[2026-03-02 16:33:26] -rw-r--r-- 2 boinc boinc 272935166 Mar  2 13:14 EVNT.48451587._000001.pool.root.1
[2026-03-02 16:33:26] -rw-r--r-- 2 boinc boinc    597967 Mar  2 13:14 input.tar.gz
[2026-03-02 16:33:26] -rw-r--r-- 2 boinc boinc     15845 Mar  2 13:14 start_atlas.sh
[2026-03-02 16:33:26] drwxrwx--x 2 boinc boinc      4096 Mar  2 13:14 shared
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc         0 Mar  2 13:14 boinc_setup_complete
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc      6372 Mar  2 13:14 init_data.xml
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc         0 Mar  2 13:14 boinc_lockfile
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc      2605 Mar  2 13:14 pandaJob.out
[2026-03-02 16:33:26] -rw------- 1 boinc boinc    998151 Mar  2 13:14 agis_schedconf.cvmfs.json
[2026-03-02 16:33:26] -rw------- 1 boinc boinc       424 Mar  2 13:14 workernode_map.json
[2026-03-02 16:33:26] drwx------ 5 boinc boinc      4096 Mar  2 13:14 pilot3
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc       531 Mar  2 16:32 boinc_task_state.xml
[2026-03-02 16:33:26] -rw------- 1 boinc boinc 301131805 Mar  2 16:32 HITS.48846287._000012.pool.root.1
[2026-03-02 16:33:26] -rw------- 1 boinc boinc      1021 Mar  2 16:32 memory_monitor_summary.json
[2026-03-02 16:33:26] -rw------- 1 boinc boinc        95 Mar  2 16:32 pilot_heartbeat.json
[2026-03-02 16:33:26] -rw------- 1 boinc boinc   1512931 Mar  2 16:32 agis_ddmendpoints.agis.ALL.json
[2026-03-02 16:33:26] -rw------- 1 boinc boinc    367182 Mar  2 16:32 log.48846287._000012.job.log.tgz.1
[2026-03-02 16:33:26] -rw------- 1 boinc boinc      6305 Mar  2 16:32 heartbeat.json
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc      8192 Mar  2 16:32 boinc_mmap_file
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc        28 Mar  2 16:32 wrapper_checkpoint.txt
[2026-03-02 16:33:26] -rw------- 1 boinc boinc       746 Mar  2 16:33 pilotlog.txt
[2026-03-02 16:33:26] -rw------- 1 boinc boinc   1678792 Mar  2 16:33 log.48846287._000012.job.log.1
[2026-03-02 16:33:26] -rw------- 1 boinc boinc       357 Mar  2 16:33 output.list
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc       620 Mar  2 16:33 runtime_log
[2026-03-02 16:33:26] -rw------- 1 boinc boinc   2068480 Mar  2 16:33 result.tar.gz
[2026-03-02 16:33:26] -rw------- 1 boinc boinc       664 Mar  2 16:33 ueUMDmUS3G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmSo9KDmdpc7qn.diag
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc      8917 Mar  2 16:33 runtime_log.err
[2026-03-02 16:33:26] -rw-r--r-- 1 boinc boinc     11619 Mar  2 16:33 stderr.txt
[2026-03-02 16:33:26] HITS file was successfully produced:
[2026-03-02 16:33:26] -rw------- 1 boinc boinc 301131805 Mar  2 16:32 shared/HITS.pool.root.1
[2026-03-02 16:33:26]  *** Contents of shared directory: ***
[2026-03-02 16:33:26] total 563240
[2026-03-02 16:33:26] -rw-r--r-- 2 boinc boinc 272935166 Mar  2 13:14 ATLAS.root_0
[2026-03-02 16:33:26] -rw-r--r-- 2 boinc boinc    597967 Mar  2 13:14 input.tar.gz
[2026-03-02 16:33:26] -rw-r--r-- 2 boinc boinc     15845 Mar  2 13:14 start_atlas.sh
[2026-03-02 16:33:26] -rw------- 1 boinc boinc 301131805 Mar  2 16:32 HITS.pool.root.1
[2026-03-02 16:33:26] -rw------- 1 boinc boinc   2068480 Mar  2 16:33 result.tar.gz
16:33:27 (201227): run_atlas exited; CPU time 46270.435410
16:33:27 (201227): called boinc_finish(0)

</stderr_txt>
]]>

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