Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:32:44 (658996): wrapper (7.7.26015): starting
01:32:44 (658996): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 01:32:44] Arguments: --nthreads 3
[2026-03-02 01:32:44] Threads: 3
[2026-03-02 01:32:44] Checking for CVMFS
[2026-03-02 01:32:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 01:32:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 01:32:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 01:32:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 01:32:44] 2.9.2.0 2927 4778 79452 156789 0 50 5627981 36864001 0 130560 0 1847073 99.981 182780 15388 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 01:32:44] CVMFS is ok
[2026-03-02 01:32:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 01:32:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 01:32:44] Further information can be found at the LHC@home message board.
[2026-03-02 01:32:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 01:32:44] Checking for apptainer binary...
[2026-03-02 01:32:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 01:32:44] Running /usr/bin/apptainer --version
[2026-03-02 01:32:44] apptainer version 1.4.1-1.1
[2026-03-02 01:32:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 01:32:44] belleA259
[2026-03-02 01:32:44] apptainer works
[2026-03-02 01:32:44] Set ATHENA_PROC_NUMBER=3
[2026-03-02 01:32:44] Set ATHENA_CORE_NUMBER=3
[2026-03-02 01:32:44] Starting ATLAS job with PandaID=7035612458
[2026-03-02 01:32:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 03:29:11]  *** The last 200 lines of the pilot log: ***
[2026-03-02 03:29:11] 2026-03-02 02:28:38,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 03:29:11] 2026-03-02 02:28:38,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 03:29:11] 2026-03-02 02:28:38,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 03:29:11] 2026-03-02 02:28:38,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 03:29:11] 2026-03-02 02:28:38,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 03:29:11] 2026-03-02 02:28:38,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 03:29:11] 2026-03-02 02:28:38,750 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 03:29:11] 2026-03-02 02:28:38,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 03:29:11] 2026-03-02 02:28:38,750 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 03:29:11] 2026-03-02 02:28:38,750 | INFO     | job 7035612458 has completed (purged errors)
[2026-03-02 03:29:11] 2026-03-02 02:28:38,750 | INFO     | overall cleanup function is called
[2026-03-02 03:29:11] 2026-03-02 02:28:39,756 | INFO     | --- collectZombieJob: --- 10, [667467]
[2026-03-02 03:29:11] 2026-03-02 02:28:39,757 | INFO     | zombie collector waiting for pid 667467
[2026-03-02 03:29:11] 2026-03-02 02:28:39,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 03:29:11] 2026-03-02 02:28:39,757 | INFO     | collected zombie processes
[2026-03-02 03:29:11] 2026-03-02 02:28:39,757 | INFO     | will attempt to kill all subprocesses of pid=667467
[2026-03-02 03:29:11] 2026-03-02 02:28:39,797 | INFO     | process IDs to be killed: [667467] (in reverse order)
[2026-03-02 03:29:11] 2026-03-02 02:28:39,822 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 03:29:11] 2026-03-02 02:28:39,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 03:29:11] 2026-03-02 02:28:39,823 | INFO     | did not find any defunct processes belonging to 667467
[2026-03-02 03:29:11] 2026-03-02 02:28:39,824 | INFO     | did not find any defunct processes belonging to 667467
[2026-03-02 03:29:11] 2026-03-02 02:28:39,825 | INFO     | ready for new job
[2026-03-02 03:29:11] 2026-03-02 02:28:39,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 03:29:11] 2026-03-02 02:28:39,825 | INFO     | **************************************
[2026-03-02 03:29:11] 2026-03-02 02:28:39,825 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 03:29:11] 2026-03-02 02:28:39,825 | INFO     | **************************************
[2026-03-02 03:29:11] 2026-03-02 02:28:39,825 | INFO     | 
[2026-03-02 03:29:11] 2026-03-02 02:28:39,826 | INFO     | architecture information:
[2026-03-02 03:29:11] 2026-03-02 02:28:39,826 | INFO     | executing command: cat /etc/os-release
[2026-03-02 03:29:11] 2026-03-02 02:28:39,835 | INFO     | cat /etc/os-release:
[2026-03-02 03:29:11] NAME="CentOS Linux"
[2026-03-02 03:29:11] VERSION="7 (Core)"
[2026-03-02 03:29:11] ID="centos"
[2026-03-02 03:29:11] ID_LIKE="rhel fedora"
[2026-03-02 03:29:11] VERSION_ID="7"
[2026-03-02 03:29:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 03:29:11] ANSI_COLOR="0;31"
[2026-03-02 03:29:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 03:29:11] HOME_URL="https://www.centos.org/"
[2026-03-02 03:29:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 03:29:11] 
[2026-03-02 03:29:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 03:29:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 03:29:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 03:29:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 03:29:11] 
[2026-03-02 03:29:11] 2026-03-02 02:28:39,835 | INFO     | **************************************
[2026-03-02 03:29:11] 2026-03-02 02:28:40,339 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 03:29:11] 2026-03-02 02:28:40,351 | INFO     | sufficient remaining disk space (355983163392 B)
[2026-03-02 03:29:11] 2026-03-02 02:28:40,351 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 03:29:11] 2026-03-02 02:28:40,351 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 03:29:11] 2026-03-02 02:28:40,351 | INFO     | update_server=False
[2026-03-02 03:29:11] 2026-03-02 02:28:40,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 03:29:11] 2026-03-02 02:28:40,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 03:29:11] 2026-03-02 02:28:40,604 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 03:29:11] 2026-03-02 02:28:40,604 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 03:29:11] 2026-03-02 02:28:40,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 03:29:11] 2026-03-02 02:28:40,604 | INFO     | will abort loop
[2026-03-02 03:29:11] 2026-03-02 02:28:40,643 | INFO     | all data control threads have been joined
[2026-03-02 03:29:11] 2026-03-02 02:28:40,933 | INFO     | all payload control threads have been joined
[2026-03-02 03:29:11] 2026-03-02 02:28:41,357 | INFO     | [job] retrieve thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:41,543 | INFO     | [data] copytool_in thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:41,610 | INFO     | [job] job monitor thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:41,649 | INFO     | [data] control thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:41,692 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:41,852 | INFO     | all job control threads have been joined
[2026-03-02 03:29:11] 2026-03-02 02:28:41,939 | INFO     | [payload] control thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:41,976 | INFO     | [payload] failed_post thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:42,313 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:42,357 | INFO     | [data] copytool_out thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:42,497 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 03:29:11] 2026-03-02 02:28:42,504 | INFO     | [payload] validate_post thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:42,733 | INFO     | [job] validate thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:42,820 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:42,850 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:42,857 | INFO     | [job] control thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:43,320 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 03:29:11] 2026-03-02 02:28:44,326 | INFO     | [job] queue monitor thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:28:46,504 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 03:29:11] 2026-03-02 02:29:02,025 | INFO     | [monitor] cgroup control has ended
[2026-03-02 03:29:11] 2026-03-02 02:29:02,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140022295770944)>', '<ExcThread(monitor, started 140021411596032)>']
[2026-03-02 03:29:11] 2026-03-02 02:29:07,426 | INFO     | all workflow threads have been joined
[2026-03-02 03:29:11] 2026-03-02 02:29:07,427 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 03:29:11] 2026-03-02 02:29:07,428 | INFO     | traces error code: 0
[2026-03-02 03:29:11] 2026-03-02 02:29:07,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 03:29:11] 2026-03-02 02:29:11,075 | INFO     | PID=663038 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 03:29:11] 2026-03-02 02:29:11,075 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 03:29:11] 2026-03-02 02:29:11,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 03:29:11] 2026-03-02 02:29:11,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 03:29:11] 2026-03-02 02:29:11,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 03:29:11] 2026-03-02 02:29:11,075 | INFO     | [monitor] control thread has ended
[2026-03-02 03:29:11] 2026-03-02 02:29:11,121 [wrapper] ==== pilot stdout END ====
[2026-03-02 03:29:11] 2026-03-02 02:29:11,123 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 03:29:11] 2026-03-02 02:29:11,126 [wrapper] pilotpid: 663038
[2026-03-02 03:29:11] 2026-03-02 02:29:11,128 [wrapper] Pilot exit status: 0
[2026-03-02 03:29:11] 2026-03-02 02:29:11,136 [wrapper] pandaids: 7035612458
[2026-03-02 03:29:11] 2026-03-02 02:29:11,153 [wrapper] cleanup supervisor_pilot  673280 663039
[2026-03-02 03:29:11] 2026-03-02 02:29:11,155 [wrapper] Test setup, not cleaning
[2026-03-02 03:29:11] 2026-03-02 02:29:11,158 [wrapper] apfmon messages muted
[2026-03-02 03:29:11] 2026-03-02 02:29:11,160 [wrapper] ==== wrapper stdout END ====
[2026-03-02 03:29:11] 2026-03-02 02:29:11,163 [wrapper] ==== wrapper stderr END ====
[2026-03-02 03:29:11]  *** Error codes and diagnostics ***
[2026-03-02 03:29:11]     "exeErrorCode": 0,
[2026-03-02 03:29:11]     "exeErrorDiag": "",
[2026-03-02 03:29:11]     "pilotErrorCode": 0,
[2026-03-02 03:29:11]     "pilotErrorDiag": "",
[2026-03-02 03:29:11]  *** Listing of results directory ***
[2026-03-02 03:29:11] total 573516
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc    584627 Mar  1 22:22 pilot3.tar.gz
[2026-03-02 03:29:11] -rwx------ 1 boinc boinc     36322 Mar  1 22:22 runpilot2-wrapper.sh
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc      5111 Mar  1 22:23 queuedata.json
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc       100 Mar  2 01:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 03:29:11] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 01:32 run_atlas
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc       105 Mar  2 01:32 job.xml
[2026-03-02 03:29:11] -rw-r--r-- 2 boinc boinc 311843277 Mar  2 01:32 EVNT.48252743._000052.pool.root.1
[2026-03-02 03:29:11] -rw-r--r-- 2 boinc boinc    597941 Mar  2 01:32 input.tar.gz
[2026-03-02 03:29:11] -rw-r--r-- 2 boinc boinc     15845 Mar  2 01:32 start_atlas.sh
[2026-03-02 03:29:11] drwxrwx--x 2 boinc boinc      4096 Mar  2 01:32 shared
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc         0 Mar  2 01:32 boinc_setup_complete
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc      6445 Mar  2 01:32 init_data.xml
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc         0 Mar  2 01:32 boinc_lockfile
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc      2491 Mar  2 01:32 pandaJob.out
[2026-03-02 03:29:11] -rw------- 1 boinc boinc    998184 Mar  2 01:32 agis_schedconf.cvmfs.json
[2026-03-02 03:29:11] -rw------- 1 boinc boinc   1513015 Mar  2 01:32 agis_ddmendpoints.agis.ALL.json
[2026-03-02 03:29:11] -rw------- 1 boinc boinc       426 Mar  2 01:32 workernode_map.json
[2026-03-02 03:29:11] drwx------ 5 boinc boinc      4096 Mar  2 01:32 pilot3
[2026-03-02 03:29:11] -rw------- 1 boinc boinc 268994816 Mar  2 03:28 HITS.48841995._001310.pool.root.1
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc       529 Mar  2 03:28 boinc_task_state.xml
[2026-03-02 03:29:11] -rw------- 1 boinc boinc        95 Mar  2 03:28 pilot_heartbeat.json
[2026-03-02 03:29:11] -rw------- 1 boinc boinc      1011 Mar  2 03:28 memory_monitor_summary.json
[2026-03-02 03:29:11] -rw------- 1 boinc boinc    267262 Mar  2 03:28 log.48841995._001310.job.log.tgz.1
[2026-03-02 03:29:11] -rw------- 1 boinc boinc      6295 Mar  2 03:28 heartbeat.json
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc        27 Mar  2 03:29 wrapper_checkpoint.txt
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc      8192 Mar  2 03:29 boinc_mmap_file
[2026-03-02 03:29:11] -rw------- 1 boinc boinc       746 Mar  2 03:29 pilotlog.txt
[2026-03-02 03:29:11] -rw------- 1 boinc boinc    998427 Mar  2 03:29 log.48841995._001310.job.log.1
[2026-03-02 03:29:11] -rw------- 1 boinc boinc       357 Mar  2 03:29 output.list
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc       620 Mar  2 03:29 runtime_log
[2026-03-02 03:29:11] -rw------- 1 boinc boinc   1280000 Mar  2 03:29 result.tar.gz
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc      8911 Mar  2 03:29 runtime_log.err
[2026-03-02 03:29:11] -rw------- 1 boinc boinc       660 Mar  2 03:29 BU8MDmVQ3G9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVdBLDmGqnQHn.diag
[2026-03-02 03:29:11] -rw-r--r-- 1 boinc boinc     11941 Mar  2 03:29 stderr.txt
[2026-03-02 03:29:11] HITS file was successfully produced:
[2026-03-02 03:29:11] -rw------- 1 boinc boinc 268994816 Mar  2 03:28 shared/HITS.pool.root.1
[2026-03-02 03:29:11]  *** Contents of shared directory: ***
[2026-03-02 03:29:11] total 569088
[2026-03-02 03:29:11] -rw-r--r-- 2 boinc boinc 311843277 Mar  2 01:32 ATLAS.root_0
[2026-03-02 03:29:11] -rw-r--r-- 2 boinc boinc    597941 Mar  2 01:32 input.tar.gz
[2026-03-02 03:29:11] -rw-r--r-- 2 boinc boinc     15845 Mar  2 01:32 start_atlas.sh
[2026-03-02 03:29:11] -rw------- 1 boinc boinc 268994816 Mar  2 03:28 HITS.pool.root.1
[2026-03-02 03:29:11] -rw------- 1 boinc boinc   1280000 Mar  2 03:29 result.tar.gz
03:29:32 (658996): run_atlas exited; CPU time 20104.773475
03:29:32 (658996): called boinc_finish(0)

</stderr_txt>
]]>

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