Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:52:07 (172737): wrapper (7.7.26015): starting
10:52:07 (172737): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 10:52:07] Arguments: --nthreads 4
[2026-03-02 10:52:07] Threads: 4
[2026-03-02 10:52:07] Checking for CVMFS
[2026-03-02 10:52:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 10:52:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 10:52:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 10:52:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 10:52:08] 2.9.2.0 3007 849 80000 156801 1 50 27942014 36864001 0 130560 0 476769 99.990 29918 17797 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 10:52:08] CVMFS is ok
[2026-03-02 10:52:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 10:52:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 10:52:08] Further information can be found at the LHC@home message board.
[2026-03-02 10:52:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 10:52:08] Checking for apptainer binary...
[2026-03-02 10:52:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 10:52:08] Running /usr/bin/apptainer --version
[2026-03-02 10:52:08] apptainer version 1.4.1-1.1
[2026-03-02 10:52:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 10:52:08] atlasA215b
[2026-03-02 10:52:08] apptainer works
[2026-03-02 10:52:08] Set ATHENA_PROC_NUMBER=4
[2026-03-02 10:52:08] Set ATHENA_CORE_NUMBER=4
[2026-03-02 10:52:08] Starting ATLAS job with PandaID=7035544106
[2026-03-02 10:52:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 11:46:43]  *** The last 200 lines of the pilot log: ***
[2026-03-02 11:46:43] 2026-03-02 10:46:12,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 11:46:43] 2026-03-02 10:46:12,679 | INFO     | collected zombie processes
[2026-03-02 11:46:43] 2026-03-02 10:46:12,679 | INFO     | will attempt to kill all subprocesses of pid=181370
[2026-03-02 11:46:43] 2026-03-02 10:46:12,720 | INFO     | process IDs to be killed: [181370] (in reverse order)
[2026-03-02 11:46:43] 2026-03-02 10:46:12,754 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 11:46:43] 2026-03-02 10:46:12,754 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 11:46:43] 2026-03-02 10:46:12,756 | INFO     | did not find any defunct processes belonging to 181370
[2026-03-02 11:46:43] 2026-03-02 10:46:12,757 | INFO     | did not find any defunct processes belonging to 181370
[2026-03-02 11:46:43] 2026-03-02 10:46:12,757 | INFO     | ready for new job
[2026-03-02 11:46:43] 2026-03-02 10:46:12,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 11:46:43] 2026-03-02 10:46:12,758 | INFO     | **************************************
[2026-03-02 11:46:43] 2026-03-02 10:46:12,758 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 11:46:43] 2026-03-02 10:46:12,758 | INFO     | **************************************
[2026-03-02 11:46:43] 2026-03-02 10:46:12,758 | INFO     | 
[2026-03-02 11:46:43] 2026-03-02 10:46:12,759 | INFO     | architecture information:
[2026-03-02 11:46:43] 2026-03-02 10:46:12,759 | INFO     | executing command: cat /etc/os-release
[2026-03-02 11:46:43] 2026-03-02 10:46:12,773 | INFO     | cat /etc/os-release:
[2026-03-02 11:46:43] NAME="CentOS Linux"
[2026-03-02 11:46:43] VERSION="7 (Core)"
[2026-03-02 11:46:43] ID="centos"
[2026-03-02 11:46:43] ID_LIKE="rhel fedora"
[2026-03-02 11:46:43] VERSION_ID="7"
[2026-03-02 11:46:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 11:46:43] ANSI_COLOR="0;31"
[2026-03-02 11:46:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 11:46:43] HOME_URL="https://www.centos.org/"
[2026-03-02 11:46:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 11:46:43] 
[2026-03-02 11:46:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 11:46:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 11:46:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 11:46:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 11:46:43] 
[2026-03-02 11:46:43] 2026-03-02 10:46:12,774 | INFO     | **************************************
[2026-03-02 11:46:43] 2026-03-02 10:46:13,277 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 11:46:43] 2026-03-02 10:46:13,295 | INFO     | sufficient remaining disk space (331267178496 B)
[2026-03-02 11:46:43] 2026-03-02 10:46:13,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 11:46:43] 2026-03-02 10:46:13,295 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 11:46:43] 2026-03-02 10:46:13,295 | INFO     | update_server=False
[2026-03-02 11:46:43] 2026-03-02 10:46:13,295 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 11:46:43] 2026-03-02 10:46:13,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 11:46:43] 2026-03-02 10:46:13,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 11:46:43] 2026-03-02 10:46:13,429 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 11:46:43] 2026-03-02 10:46:13,430 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 11:46:43] 2026-03-02 10:46:13,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 11:46:43] 2026-03-02 10:46:13,430 | INFO     | will abort loop
[2026-03-02 11:46:43] 2026-03-02 10:46:13,869 | INFO     | all data control threads have been joined
[2026-03-02 11:46:43] 2026-03-02 10:46:14,070 | INFO     | all payload control threads have been joined
[2026-03-02 11:46:43] 2026-03-02 10:46:14,105 | INFO     | all job control threads have been joined
[2026-03-02 11:46:43] 2026-03-02 10:46:14,301 | INFO     | [job] retrieve thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:14,301 | INFO     | [job] queue monitor thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:14,305 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:14,411 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:14,435 | INFO     | [job] job monitor thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:14,517 | INFO     | [payload] validate_post thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:14,545 | INFO     | [data] copytool_in thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:14,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 11:46:43] 2026-03-02 10:46:14,874 | INFO     | [data] control thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:14,996 | INFO     | [payload] failed_post thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:15,076 | INFO     | [payload] control thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:15,111 | INFO     | [job] control thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:15,685 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:15,698 | INFO     | [job] validate thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:16,587 | INFO     | [data] copytool_out thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:17,302 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:23,996 | INFO     | job.realtimelogging is not enabled
[2026-03-02 11:46:43] 2026-03-02 10:46:24,424 | INFO     | [monitor] cgroup control has ended
[2026-03-02 11:46:43] 2026-03-02 10:46:25,002 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 11:46:43] 2026-03-02 10:46:26,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140267231377216)>', '<ExcThread(monitor, started 140266375735040)>']
[2026-03-02 11:46:43] 2026-03-02 10:46:31,723 | INFO     | all workflow threads have been joined
[2026-03-02 11:46:43] 2026-03-02 10:46:31,724 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 11:46:43] 2026-03-02 10:46:31,724 | INFO     | traces error code: 0
[2026-03-02 11:46:43] 2026-03-02 10:46:31,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 11:46:43] 2026-03-02 10:46:43,391 | INFO     | PID=176864 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 11:46:43] 2026-03-02 10:46:43,392 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 11:46:43] 2026-03-02 10:46:43,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 11:46:43] 2026-03-02 10:46:43,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 11:46:43] 2026-03-02 10:46:43,392 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 11:46:43] 2026-03-02 10:46:43,392 | INFO     | [monitor] control thread has ended
[2026-03-02 11:46:43] 2026-03-02 10:46:43,466 [wrapper] ==== pilot stdout END ====
[2026-03-02 11:46:43] 2026-03-02 10:46:43,471 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 11:46:43] 2026-03-02 10:46:43,475 [wrapper] pilotpid: 176864
[2026-03-02 11:46:43] 2026-03-02 10:46:43,479 [wrapper] Pilot exit status: 0
[2026-03-02 11:46:43] 2026-03-02 10:46:43,492 [wrapper] pandaids: 7035544106
[2026-03-02 11:46:43] 2026-03-02 10:46:43,514 [wrapper] cleanup supervisor_pilot  186343 176865
[2026-03-02 11:46:43] 2026-03-02 10:46:43,518 [wrapper] Test setup, not cleaning
[2026-03-02 11:46:43] 2026-03-02 10:46:43,522 [wrapper] apfmon messages muted
[2026-03-02 11:46:43] 2026-03-02 10:46:43,526 [wrapper] ==== wrapper stdout END ====
[2026-03-02 11:46:43] 2026-03-02 10:46:43,530 [wrapper] ==== wrapper stderr END ====
[2026-03-02 11:46:43]  *** Error codes and diagnostics ***
[2026-03-02 11:46:43]     "exeErrorCode": 0,
[2026-03-02 11:46:43]     "exeErrorDiag": "",
[2026-03-02 11:46:43]     "pilotErrorCode": 0,
[2026-03-02 11:46:43]     "pilotErrorDiag": "",
[2026-03-02 11:46:43]  *** Listing of results directory ***
[2026-03-02 11:46:43] total 326944
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc    584627 Mar  1 20:52 pilot3.tar.gz
[2026-03-02 11:46:43] -rwx------ 1 boinc boinc     36322 Mar  1 20:53 runpilot2-wrapper.sh
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc      5111 Mar  1 20:54 queuedata.json
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc       100 Mar  2 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 11:46:43] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 10:52 run_atlas
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc       105 Mar  2 10:52 job.xml
[2026-03-02 11:46:43] -rw-r--r-- 2 boinc boinc 189604328 Mar  2 10:52 EVNT.48700856._000053.pool.root.1
[2026-03-02 11:46:43] -rw-r--r-- 2 boinc boinc    597932 Mar  2 10:52 input.tar.gz
[2026-03-02 11:46:43] -rw-r--r-- 2 boinc boinc     15845 Mar  2 10:52 start_atlas.sh
[2026-03-02 11:46:43] drwxrwx--x 2 boinc boinc      4096 Mar  2 10:52 shared
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc         0 Mar  2 10:52 boinc_setup_complete
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc      6372 Mar  2 10:52 init_data.xml
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc         0 Mar  2 10:52 boinc_lockfile
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc      2520 Mar  2 10:52 pandaJob.out
[2026-03-02 11:46:43] -rw------- 1 boinc boinc    997501 Mar  2 10:52 agis_schedconf.cvmfs.json
[2026-03-02 11:46:43] -rw------- 1 boinc boinc   1513015 Mar  2 10:52 agis_ddmendpoints.agis.ALL.json
[2026-03-02 11:46:43] -rw------- 1 boinc boinc       425 Mar  2 10:52 workernode_map.json
[2026-03-02 11:46:43] drwx------ 5 boinc boinc      4096 Mar  2 10:52 pilot3
[2026-03-02 11:46:43] -rw------- 1 boinc boinc 139790513 Mar  2 11:45 HITS.48700858._001322.pool.root.1
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc       529 Mar  2 11:46 boinc_task_state.xml
[2026-03-02 11:46:43] -rw------- 1 boinc boinc      1022 Mar  2 11:46 memory_monitor_summary.json
[2026-03-02 11:46:43] -rw------- 1 boinc boinc    252689 Mar  2 11:46 log.48700858._001322.job.log.tgz.1
[2026-03-02 11:46:43] -rw------- 1 boinc boinc      6318 Mar  2 11:46 heartbeat.json
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc        27 Mar  2 11:46 wrapper_checkpoint.txt
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc      8192 Mar  2 11:46 boinc_mmap_file
[2026-03-02 11:46:43] -rw------- 1 boinc boinc       746 Mar  2 11:46 pilotlog.txt
[2026-03-02 11:46:43] -rw------- 1 boinc boinc        95 Mar  2 11:46 pilot_heartbeat.json
[2026-03-02 11:46:43] -rw------- 1 boinc boinc    491490 Mar  2 11:46 log.48700858._001322.job.log.1
[2026-03-02 11:46:43] -rw------- 1 boinc boinc       357 Mar  2 11:46 output.list
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc       620 Mar  2 11:46 runtime_log
[2026-03-02 11:46:43] -rw------- 1 boinc boinc    757760 Mar  2 11:46 result.tar.gz
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc      8916 Mar  2 11:46 runtime_log.err
[2026-03-02 11:46:43] -rw------- 1 boinc boinc       661 Mar  2 11:46 VwDODmw11G9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYVBLDmoRl0ym.diag
[2026-03-02 11:46:43] -rw-r--r-- 1 boinc boinc     10726 Mar  2 11:46 stderr.txt
[2026-03-02 11:46:43] HITS file was successfully produced:
[2026-03-02 11:46:43] -rw------- 1 boinc boinc 139790513 Mar  2 11:45 shared/HITS.pool.root.1
[2026-03-02 11:46:43]  *** Contents of shared directory: ***
[2026-03-02 11:46:43] total 323028
[2026-03-02 11:46:43] -rw-r--r-- 2 boinc boinc 189604328 Mar  2 10:52 ATLAS.root_0
[2026-03-02 11:46:43] -rw-r--r-- 2 boinc boinc    597932 Mar  2 10:52 input.tar.gz
[2026-03-02 11:46:43] -rw-r--r-- 2 boinc boinc     15845 Mar  2 10:52 start_atlas.sh
[2026-03-02 11:46:43] -rw------- 1 boinc boinc 139790513 Mar  2 11:45 HITS.pool.root.1
[2026-03-02 11:46:43] -rw------- 1 boinc boinc    757760 Mar  2 11:46 result.tar.gz
11:46:44 (172737): run_atlas exited; CPU time 11897.811377
11:46:44 (172737): called boinc_finish(0)

</stderr_txt>
]]>

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