Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:53:30 (158674): wrapper (7.7.26015): starting
09:53:30 (158674): wrapper: running run_atlas (--nthreads 4)
[2026-03-02 09:53:30] Arguments: --nthreads 4
[2026-03-02 09:53:30] Threads: 4
[2026-03-02 09:53:30] Checking for CVMFS
[2026-03-02 09:53:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 09:53:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 09:53:31] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 09:53:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 09:53:31] 2.9.2.0 3007 790 78136 156800 3 50 27939015 36864001 0 130560 0 437235 99.989 28573 17443 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 09:53:31] CVMFS is ok
[2026-03-02 09:53:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 09:53:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 09:53:31] Further information can be found at the LHC@home message board.
[2026-03-02 09:53:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 09:53:31] Checking for apptainer binary...
[2026-03-02 09:53:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 09:53:31] Running /usr/bin/apptainer --version
[2026-03-02 09:53:31] apptainer version 1.4.1-1.1
[2026-03-02 09:53:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 09:53:31] atlasA215b
[2026-03-02 09:53:31] apptainer works
[2026-03-02 09:53:31] Set ATHENA_PROC_NUMBER=4
[2026-03-02 09:53:31] Set ATHENA_CORE_NUMBER=4
[2026-03-02 09:53:31] Starting ATLAS job with PandaID=7035543880
[2026-03-02 09:53:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 10:52:03]  *** The last 200 lines of the pilot log: ***
[2026-03-02 10:52:03] 2026-03-02 09:51:31,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,144 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,144 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,145 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-02 10:52:03] 2026-03-02 09:51:31,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,145 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-02 10:52:03] 2026-03-02 09:51:31,145 | INFO     | job 7035543880 has completed (purged errors)
[2026-03-02 10:52:03] 2026-03-02 09:51:31,145 | INFO     | overall cleanup function is called
[2026-03-02 10:52:03] 2026-03-02 09:51:32,151 | INFO     | --- collectZombieJob: --- 10, [167299]
[2026-03-02 10:52:03] 2026-03-02 09:51:32,151 | INFO     | zombie collector waiting for pid 167299
[2026-03-02 10:52:03] 2026-03-02 09:51:32,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 10:52:03] 2026-03-02 09:51:32,152 | INFO     | collected zombie processes
[2026-03-02 10:52:03] 2026-03-02 09:51:32,152 | INFO     | will attempt to kill all subprocesses of pid=167299
[2026-03-02 10:52:03] 2026-03-02 09:51:32,192 | INFO     | process IDs to be killed: [167299] (in reverse order)
[2026-03-02 10:52:03] 2026-03-02 09:51:32,225 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 10:52:03] 2026-03-02 09:51:32,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 10:52:03] 2026-03-02 09:51:32,227 | INFO     | did not find any defunct processes belonging to 167299
[2026-03-02 10:52:03] 2026-03-02 09:51:32,228 | INFO     | did not find any defunct processes belonging to 167299
[2026-03-02 10:52:03] 2026-03-02 09:51:32,228 | INFO     | ready for new job
[2026-03-02 10:52:03] 2026-03-02 09:51:32,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 10:52:03] 2026-03-02 09:51:32,229 | INFO     | **************************************
[2026-03-02 10:52:03] 2026-03-02 09:51:32,229 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 10:52:03] 2026-03-02 09:51:32,229 | INFO     | **************************************
[2026-03-02 10:52:03] 2026-03-02 09:51:32,229 | INFO     | 
[2026-03-02 10:52:03] 2026-03-02 09:51:32,229 | INFO     | architecture information:
[2026-03-02 10:52:03] 2026-03-02 09:51:32,230 | INFO     | executing command: cat /etc/os-release
[2026-03-02 10:52:03] 2026-03-02 09:51:32,244 | INFO     | cat /etc/os-release:
[2026-03-02 10:52:03] NAME="CentOS Linux"
[2026-03-02 10:52:03] VERSION="7 (Core)"
[2026-03-02 10:52:03] ID="centos"
[2026-03-02 10:52:03] ID_LIKE="rhel fedora"
[2026-03-02 10:52:03] VERSION_ID="7"
[2026-03-02 10:52:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 10:52:03] ANSI_COLOR="0;31"
[2026-03-02 10:52:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 10:52:03] HOME_URL="https://www.centos.org/"
[2026-03-02 10:52:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 10:52:03] 
[2026-03-02 10:52:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 10:52:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 10:52:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 10:52:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 10:52:03] 
[2026-03-02 10:52:03] 2026-03-02 09:51:32,245 | INFO     | **************************************
[2026-03-02 10:52:03] 2026-03-02 09:51:32,748 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 10:52:03] 2026-03-02 09:51:32,766 | INFO     | sufficient remaining disk space (331288150016 B)
[2026-03-02 10:52:03] 2026-03-02 09:51:32,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 10:52:03] 2026-03-02 09:51:32,766 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 10:52:03] 2026-03-02 09:51:32,766 | INFO     | update_server=False
[2026-03-02 10:52:03] 2026-03-02 09:51:32,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 10:52:03] 2026-03-02 09:51:32,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 10:52:03] 2026-03-02 09:51:32,864 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-02 10:52:03] 2026-03-02 09:51:32,865 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-02 10:52:03] 2026-03-02 09:51:32,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 10:52:03] 2026-03-02 09:51:32,865 | INFO     | will abort loop
[2026-03-02 10:52:03] 2026-03-02 09:51:33,158 | INFO     | all job control threads have been joined
[2026-03-02 10:52:03] 2026-03-02 09:51:33,387 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 10:52:03] 2026-03-02 09:51:33,682 | INFO     | all data control threads have been joined
[2026-03-02 10:52:03] 2026-03-02 09:51:33,772 | INFO     | [job] retrieve thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:33,773 | INFO     | [job] queue monitor thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:33,826 | INFO     | [data] copytool_in thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:33,870 | INFO     | [job] job monitor thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:34,030 | INFO     | all payload control threads have been joined
[2026-03-02 10:52:03] 2026-03-02 09:51:34,093 | INFO     | [payload] failed_post thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:34,164 | INFO     | [job] control thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:34,492 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:34,688 | INFO     | [data] control thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:34,730 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:34,934 | INFO     | [payload] validate_post thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:34,995 | INFO     | [job] validate thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:35,032 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 10:52:03] 2026-03-02 09:51:35,036 | INFO     | [payload] control thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:35,071 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:35,178 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:35,393 | INFO     | [data] copytool_out thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:39,039 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 10:52:03] 2026-03-02 09:51:47,537 | INFO     | [monitor] cgroup control has ended
[2026-03-02 10:52:03] 2026-03-02 09:51:48,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139651345954624)>', '<ExcThread(monitor, started 139650693838592)>']
[2026-03-02 10:52:03] 2026-03-02 09:51:53,504 | INFO     | all workflow threads have been joined
[2026-03-02 10:52:03] 2026-03-02 09:51:53,504 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 10:52:03] 2026-03-02 09:51:53,504 | INFO     | traces error code: 0
[2026-03-02 10:52:03] 2026-03-02 09:51:53,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 10:52:03] 2026-03-02 09:52:03,721 | INFO     | PID=162784 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-02 10:52:03] 2026-03-02 09:52:03,722 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 10:52:03] 2026-03-02 09:52:03,722 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 10:52:03] 2026-03-02 09:52:03,722 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 10:52:03] 2026-03-02 09:52:03,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 10:52:03] 2026-03-02 09:52:03,722 | CRITICAL | thread 'MainThread' is not alive
[2026-03-02 10:52:03] 2026-03-02 09:52:03,722 | INFO     | [monitor] control thread has ended
[2026-03-02 10:52:03] 2026-03-02 09:52:03,797 [wrapper] ==== pilot stdout END ====
[2026-03-02 10:52:03] 2026-03-02 09:52:03,801 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 10:52:03] 2026-03-02 09:52:03,805 [wrapper] pilotpid: 162784
[2026-03-02 10:52:03] 2026-03-02 09:52:03,810 [wrapper] Pilot exit status: 0
[2026-03-02 10:52:03] 2026-03-02 09:52:03,822 [wrapper] pandaids: 7035543880
[2026-03-02 10:52:03] 2026-03-02 09:52:03,844 [wrapper] cleanup supervisor_pilot  172311 162785
[2026-03-02 10:52:03] 2026-03-02 09:52:03,848 [wrapper] Test setup, not cleaning
[2026-03-02 10:52:03] 2026-03-02 09:52:03,852 [wrapper] apfmon messages muted
[2026-03-02 10:52:03] 2026-03-02 09:52:03,856 [wrapper] ==== wrapper stdout END ====
[2026-03-02 10:52:03] 2026-03-02 09:52:03,860 [wrapper] ==== wrapper stderr END ====
[2026-03-02 10:52:03]  *** Error codes and diagnostics ***
[2026-03-02 10:52:03]     "exeErrorCode": 0,
[2026-03-02 10:52:03]     "exeErrorDiag": "",
[2026-03-02 10:52:03]     "pilotErrorCode": 0,
[2026-03-02 10:52:03]     "pilotErrorDiag": "",
[2026-03-02 10:52:03]  *** Listing of results directory ***
[2026-03-02 10:52:03] total 331980
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc    584627 Mar  1 20:52 pilot3.tar.gz
[2026-03-02 10:52:03] -rwx------ 1 boinc boinc     36322 Mar  1 20:53 runpilot2-wrapper.sh
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc      5111 Mar  1 20:53 queuedata.json
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc       100 Mar  2 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 10:52:03] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 09:53 run_atlas
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc       105 Mar  2 09:53 job.xml
[2026-03-02 10:52:03] -rw-r--r-- 2 boinc boinc 189052816 Mar  2 09:53 EVNT.48700856._000044.pool.root.1
[2026-03-02 10:52:03] -rw-r--r-- 2 boinc boinc    597940 Mar  2 09:53 input.tar.gz
[2026-03-02 10:52:03] -rw-r--r-- 2 boinc boinc     15845 Mar  2 09:53 start_atlas.sh
[2026-03-02 10:52:03] drwxrwx--x 2 boinc boinc      4096 Mar  2 09:53 shared
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc         0 Mar  2 09:53 boinc_setup_complete
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc      6372 Mar  2 09:53 init_data.xml
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc         0 Mar  2 09:53 boinc_lockfile
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc      2520 Mar  2 09:53 pandaJob.out
[2026-03-02 10:52:03] -rw------- 1 boinc boinc    997493 Mar  2 09:53 agis_schedconf.cvmfs.json
[2026-03-02 10:52:03] -rw------- 1 boinc boinc   1513015 Mar  2 09:53 agis_ddmendpoints.agis.ALL.json
[2026-03-02 10:52:03] -rw------- 1 boinc boinc       431 Mar  2 09:53 workernode_map.json
[2026-03-02 10:52:03] drwx------ 5 boinc boinc      4096 Mar  2 09:53 pilot3
[2026-03-02 10:52:03] -rw------- 1 boinc boinc 145419632 Mar  2 10:51 HITS.48700858._001096.pool.root.1
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc       529 Mar  2 10:51 boinc_task_state.xml
[2026-03-02 10:52:03] -rw------- 1 boinc boinc      1016 Mar  2 10:51 memory_monitor_summary.json
[2026-03-02 10:52:03] -rw------- 1 boinc boinc    254654 Mar  2 10:51 log.48700858._001096.job.log.tgz.1
[2026-03-02 10:52:03] -rw------- 1 boinc boinc      6320 Mar  2 10:51 heartbeat.json
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc      8192 Mar  2 10:51 boinc_mmap_file
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc        27 Mar  2 10:51 wrapper_checkpoint.txt
[2026-03-02 10:52:03] -rw------- 1 boinc boinc       816 Mar  2 10:52 pilotlog.txt
[2026-03-02 10:52:03] -rw------- 1 boinc boinc        95 Mar  2 10:52 pilot_heartbeat.json
[2026-03-02 10:52:03] -rw------- 1 boinc boinc    523021 Mar  2 10:52 log.48700858._001096.job.log.1
[2026-03-02 10:52:03] -rw------- 1 boinc boinc       357 Mar  2 10:52 output.list
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc       620 Mar  2 10:52 runtime_log
[2026-03-02 10:52:03] -rw------- 1 boinc boinc    798720 Mar  2 10:52 result.tar.gz
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc      8916 Mar  2 10:52 runtime_log.err
[2026-03-02 10:52:03] -rw------- 1 boinc boinc       661 Mar  2 10:52 KgYMDmo11G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcW9KDmp962Go.diag
[2026-03-02 10:52:03] -rw-r--r-- 1 boinc boinc     12342 Mar  2 10:52 stderr.txt
[2026-03-02 10:52:03] HITS file was successfully produced:
[2026-03-02 10:52:03] -rw------- 1 boinc boinc 145419632 Mar  2 10:51 shared/HITS.pool.root.1
[2026-03-02 10:52:03]  *** Contents of shared directory: ***
[2026-03-02 10:52:03] total 328024
[2026-03-02 10:52:03] -rw-r--r-- 2 boinc boinc 189052816 Mar  2 09:53 ATLAS.root_0
[2026-03-02 10:52:03] -rw-r--r-- 2 boinc boinc    597940 Mar  2 09:53 input.tar.gz
[2026-03-02 10:52:03] -rw-r--r-- 2 boinc boinc     15845 Mar  2 09:53 start_atlas.sh
[2026-03-02 10:52:03] -rw------- 1 boinc boinc 145419632 Mar  2 10:51 HITS.pool.root.1
[2026-03-02 10:52:03] -rw------- 1 boinc boinc    798720 Mar  2 10:52 result.tar.gz
10:52:05 (158674): run_atlas exited; CPU time 12880.231965
10:52:05 (158674): called boinc_finish(0)

</stderr_txt>
]]>

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