Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:11:27 (3766450): wrapper (7.7.26015): starting
00:11:27 (3766450): wrapper: running run_atlas (--nthreads 3)
[2026-03-02 00:11:27] Arguments: --nthreads 3
[2026-03-02 00:11:27] Threads: 3
[2026-03-02 00:11:27] Checking for CVMFS
[2026-03-02 00:11:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-02 00:11:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-02 00:11:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-02 00:11:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-02 00:11:29] 2.9.2.0 2914701 6126 81284 156787 3 9 18036704 36864001 0 130560 0 2375755 99.980 246952 6892 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-02 00:11:29] CVMFS is ok
[2026-03-02 00:11:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-02 00:11:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-02 00:11:29] Further information can be found at the LHC@home message board.
[2026-03-02 00:11:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-02 00:11:29] Checking for apptainer binary...
[2026-03-02 00:11:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-02 00:11:29] Running /usr/bin/apptainer --version
[2026-03-02 00:11:29] apptainer version 1.4.1-1.1
[2026-03-02 00:11:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-02 00:11:29] thA330a
[2026-03-02 00:11:29] apptainer works
[2026-03-02 00:11:29] Set ATHENA_PROC_NUMBER=3
[2026-03-02 00:11:29] Set ATHENA_CORE_NUMBER=3
[2026-03-02 00:11:29] Starting ATLAS job with PandaID=7035457836
[2026-03-02 00:11:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-02 01:40:04]  *** The last 200 lines of the pilot log: ***
[2026-03-02 01:40:04] 2026-03-02 00:39:32,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-02 01:40:04] 2026-03-02 00:39:32,885 | INFO     | collected zombie processes
[2026-03-02 01:40:04] 2026-03-02 00:39:32,885 | INFO     | will attempt to kill all subprocesses of pid=3774921
[2026-03-02 01:40:04] 2026-03-02 00:39:32,929 | INFO     | process IDs to be killed: [3774921] (in reverse order)
[2026-03-02 01:40:04] 2026-03-02 00:39:32,953 | WARNING  | found no corresponding commands to process id(s)
[2026-03-02 01:40:04] 2026-03-02 00:39:32,954 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-02 01:40:04] 2026-03-02 00:39:32,955 | INFO     | did not find any defunct processes belonging to 3774921
[2026-03-02 01:40:04] 2026-03-02 00:39:32,956 | INFO     | did not find any defunct processes belonging to 3774921
[2026-03-02 01:40:04] 2026-03-02 00:39:32,956 | INFO     | ready for new job
[2026-03-02 01:40:04] 2026-03-02 00:39:32,956 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-02 01:40:04] 2026-03-02 00:39:32,957 | INFO     | **************************************
[2026-03-02 01:40:04] 2026-03-02 00:39:32,957 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-02 01:40:04] 2026-03-02 00:39:32,957 | INFO     | **************************************
[2026-03-02 01:40:04] 2026-03-02 00:39:32,957 | INFO     | 
[2026-03-02 01:40:04] 2026-03-02 00:39:32,957 | INFO     | architecture information:
[2026-03-02 01:40:04] 2026-03-02 00:39:32,957 | INFO     | executing command: cat /etc/os-release
[2026-03-02 01:40:04] 2026-03-02 00:39:32,966 | INFO     | cat /etc/os-release:
[2026-03-02 01:40:04] NAME="CentOS Linux"
[2026-03-02 01:40:04] VERSION="7 (Core)"
[2026-03-02 01:40:04] ID="centos"
[2026-03-02 01:40:04] ID_LIKE="rhel fedora"
[2026-03-02 01:40:04] VERSION_ID="7"
[2026-03-02 01:40:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-02 01:40:04] ANSI_COLOR="0;31"
[2026-03-02 01:40:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-02 01:40:04] HOME_URL="https://www.centos.org/"
[2026-03-02 01:40:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-02 01:40:04] 
[2026-03-02 01:40:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-02 01:40:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-02 01:40:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-02 01:40:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-02 01:40:04] 
[2026-03-02 01:40:04] 2026-03-02 00:39:32,966 | INFO     | **************************************
[2026-03-02 01:40:04] 2026-03-02 00:39:33,092 | WARNING  | process 3774921 can no longer be monitored (due to stat problems) - aborting
[2026-03-02 01:40:04] 2026-03-02 00:39:33,122 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 01:40:04] 2026-03-02 00:39:33,122 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-02 01:40:04] 2026-03-02 00:39:33,122 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-02 01:40:04] 2026-03-02 00:39:33,123 | WARNING  | maxPSS not found in memory monitor output
[2026-03-02 01:40:04] 2026-03-02 00:39:33,123 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7035457836/payload.stdout) since it has not been created yet
[2026-03-02 01:40:04] 2026-03-02 00:39:33,123 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 01:40:04] 2026-03-02 00:39:33,133 | INFO     | sufficient remaining disk space (243374489600 B)
[2026-03-02 01:40:04] 2026-03-02 00:39:33,133 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-02 01:40:04] 2026-03-02 00:39:33,133 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7035457836/HITS.48838462._004729.pool.root.1 since it does not exist
[2026-03-02 01:40:04] 2026-03-02 00:39:33,173 | INFO     | number of running child processes to parent process 3774921: 1
[2026-03-02 01:40:04] 2026-03-02 00:39:33,173 | INFO     | maximum number of monitored processes: 6
[2026-03-02 01:40:04] 2026-03-02 00:39:33,173 | INFO     | aborting job monitoring since job object (job id=7035457836) has expired
[2026-03-02 01:40:04] 2026-03-02 00:39:33,469 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-02 01:40:04] 2026-03-02 00:39:33,482 | INFO     | sufficient remaining disk space (243374489600 B)
[2026-03-02 01:40:04] 2026-03-02 00:39:33,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-02 01:40:04] 2026-03-02 00:39:33,483 | INFO     | current server update state: UPDATING_FINAL
[2026-03-02 01:40:04] 2026-03-02 00:39:33,483 | INFO     | update_server=False
[2026-03-02 01:40:04] 2026-03-02 00:39:33,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-02 01:40:04] 2026-03-02 00:39:33,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-02 01:40:04] 2026-03-02 00:39:33,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-02 01:40:04] 2026-03-02 00:39:33,483 | INFO     | will abort loop
[2026-03-02 01:40:04] 2026-03-02 00:39:33,977 | INFO     | all data control threads have been joined
[2026-03-02 01:40:04] 2026-03-02 00:39:33,988 | INFO     | all job control threads have been joined
[2026-03-02 01:40:04] 2026-03-02 00:39:34,214 | INFO     | all payload control threads have been joined
[2026-03-02 01:40:04] 2026-03-02 00:39:34,488 | INFO     | [job] retrieve thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:34,488 | INFO     | [job] queue monitor thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:34,489 | INFO     | [job] job monitor thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:34,792 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-02 01:40:04] 2026-03-02 00:39:34,802 | INFO     | [payload] validate_post thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:34,983 | INFO     | [data] control thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:34,993 | INFO     | [job] control thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:35,144 | INFO     | [payload] failed_post thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:35,220 | INFO     | [payload] control thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:35,315 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-02 01:40:04] 2026-03-02 00:39:35,548 | INFO     | [job] validate thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:35,601 | INFO     | [payload] validate_pre thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:35,653 | INFO     | [job] create_data_payload thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:35,786 | INFO     | [data] copytool_in thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:35,978 | INFO     | [payload] execute_payloads thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:36,797 | INFO     | [data] copytool_out thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:39,322 | INFO     | [data] queue_monitor thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:44,157 | INFO     | job.realtimelogging is not enabled
[2026-03-02 01:40:04] 2026-03-02 00:39:45,163 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-02 01:40:04] 2026-03-02 00:39:46,179 | INFO     | [monitor] cgroup control has ended
[2026-03-02 01:40:04] 2026-03-02 00:39:47,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948915910464)>', '<ExcThread(monitor, started 139948262934272)>']
[2026-03-02 01:40:04] 2026-03-02 00:39:52,220 | INFO     | all workflow threads have been joined
[2026-03-02 01:40:04] 2026-03-02 00:39:52,220 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-02 01:40:04] 2026-03-02 00:39:52,221 | INFO     | traces error code: 0
[2026-03-02 01:40:04] 2026-03-02 00:39:52,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-02 01:40:04] 2026-03-02 00:40:04,427 | INFO     | PID=3770489 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-02 01:40:04] 2026-03-02 00:40:04,428 | INFO     | found 0 job(s) in 20 queues
[2026-03-02 01:40:04] 2026-03-02 00:40:04,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-02 01:40:04] 2026-03-02 00:40:04,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-02 01:40:04] 2026-03-02 00:40:04,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-02 01:40:04] 2026-03-02 00:40:04,428 | INFO     | [monitor] control thread has ended
[2026-03-02 01:40:04] 2026-03-02 00:40:04,475 [wrapper] ==== pilot stdout END ====
[2026-03-02 01:40:04] 2026-03-02 00:40:04,477 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-02 01:40:04] 2026-03-02 00:40:04,480 [wrapper] pilotpid: 3770489
[2026-03-02 01:40:04] 2026-03-02 00:40:04,482 [wrapper] Pilot exit status: 0
[2026-03-02 01:40:04] 2026-03-02 00:40:04,490 [wrapper] pandaids: 7035457836
[2026-03-02 01:40:04] 2026-03-02 00:40:04,506 [wrapper] cleanup supervisor_pilot 3781191 3770490
[2026-03-02 01:40:04] 2026-03-02 00:40:04,508 [wrapper] Test setup, not cleaning
[2026-03-02 01:40:04] 2026-03-02 00:40:04,510 [wrapper] apfmon messages muted
[2026-03-02 01:40:04] 2026-03-02 00:40:04,513 [wrapper] ==== wrapper stdout END ====
[2026-03-02 01:40:04] 2026-03-02 00:40:04,515 [wrapper] ==== wrapper stderr END ====
[2026-03-02 01:40:04]  *** Error codes and diagnostics ***
[2026-03-02 01:40:04]     "exeErrorCode": 0,
[2026-03-02 01:40:04]     "exeErrorDiag": "",
[2026-03-02 01:40:04]     "pilotErrorCode": 0,
[2026-03-02 01:40:04]     "pilotErrorDiag": "",
[2026-03-02 01:40:04]  *** Listing of results directory ***
[2026-03-02 01:40:04] total 478660
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc    584627 Mar  1 19:35 pilot3.tar.gz
[2026-03-02 01:40:04] -rwx------ 1 boinc boinc     36322 Mar  1 19:39 runpilot2-wrapper.sh
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc      5111 Mar  1 19:40 queuedata.json
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc       100 Mar  2 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-02 01:40:04] -rwxr-xr-x 1 boinc boinc      7986 Mar  2 00:11 run_atlas
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc       105 Mar  2 00:11 job.xml
[2026-03-02 01:40:04] -rw-r--r-- 2 boinc boinc 277998877 Mar  2 00:11 EVNT.48220133._000205.pool.root.1
[2026-03-02 01:40:04] -rw-r--r-- 2 boinc boinc    597971 Mar  2 00:11 input.tar.gz
[2026-03-02 01:40:04] -rw-r--r-- 2 boinc boinc     15845 Mar  2 00:11 start_atlas.sh
[2026-03-02 01:40:04] drwxrwx--x 2 boinc boinc      4096 Mar  2 00:11 shared
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc         0 Mar  2 00:11 boinc_setup_complete
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc      6440 Mar  2 00:11 init_data.xml
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc         0 Mar  2 00:11 boinc_lockfile
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc      2562 Mar  2 00:11 pandaJob.out
[2026-03-02 01:40:04] -rw------- 1 boinc boinc    998184 Mar  2 00:11 agis_schedconf.cvmfs.json
[2026-03-02 01:40:04] -rw------- 1 boinc boinc   1513015 Mar  2 00:11 agis_ddmendpoints.agis.ALL.json
[2026-03-02 01:40:04] -rw------- 1 boinc boinc       428 Mar  2 00:11 workernode_map.json
[2026-03-02 01:40:04] drwx------ 5 boinc boinc      4096 Mar  2 00:11 pilot3
[2026-03-02 01:40:04] -rw------- 1 boinc boinc 206193467 Mar  2 01:39 HITS.48838462._004729.pool.root.1
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc       529 Mar  2 01:39 boinc_task_state.xml
[2026-03-02 01:40:04] -rw------- 1 boinc boinc      1015 Mar  2 01:39 memory_monitor_summary.json
[2026-03-02 01:40:04] -rw------- 1 boinc boinc    250424 Mar  2 01:39 log.48838462._004729.job.log.tgz.1
[2026-03-02 01:40:04] -rw------- 1 boinc boinc      6303 Mar  2 01:39 heartbeat.json
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc      8192 Mar  2 01:39 boinc_mmap_file
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc        27 Mar  2 01:39 wrapper_checkpoint.txt
[2026-03-02 01:40:04] -rw------- 1 boinc boinc       747 Mar  2 01:40 pilotlog.txt
[2026-03-02 01:40:04] -rw------- 1 boinc boinc        95 Mar  2 01:40 pilot_heartbeat.json
[2026-03-02 01:40:04] -rw------- 1 boinc boinc    769595 Mar  2 01:40 log.48838462._004729.job.log.1
[2026-03-02 01:40:04] -rw------- 1 boinc boinc       357 Mar  2 01:40 output.list
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc       620 Mar  2 01:40 runtime_log
[2026-03-02 01:40:04] -rw------- 1 boinc boinc   1034240 Mar  2 01:40 result.tar.gz
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc      8901 Mar  2 01:40 runtime_log.err
[2026-03-02 01:40:04] -rw------- 1 boinc boinc       658 Mar  2 01:40 raoNDmHs0G9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdT9KDme9TvCn.diag
[2026-03-02 01:40:04] -rw-r--r-- 1 boinc boinc     12292 Mar  2 01:40 stderr.txt
[2026-03-02 01:40:04] HITS file was successfully produced:
[2026-03-02 01:40:04] -rw------- 1 boinc boinc 206193467 Mar  2 01:39 shared/HITS.pool.root.1
[2026-03-02 01:40:04]  *** Contents of shared directory: ***
[2026-03-02 01:40:04] total 474468
[2026-03-02 01:40:04] -rw-r--r-- 2 boinc boinc 277998877 Mar  2 00:11 ATLAS.root_0
[2026-03-02 01:40:04] -rw-r--r-- 2 boinc boinc    597971 Mar  2 00:11 input.tar.gz
[2026-03-02 01:40:04] -rw-r--r-- 2 boinc boinc     15845 Mar  2 00:11 start_atlas.sh
[2026-03-02 01:40:04] -rw------- 1 boinc boinc 206193467 Mar  2 01:39 HITS.pool.root.1
[2026-03-02 01:40:04] -rw------- 1 boinc boinc   1034240 Mar  2 01:40 result.tar.gz
01:40:05 (3766450): run_atlas exited; CPU time 15142.647800
01:40:05 (3766450): called boinc_finish(0)

</stderr_txt>
]]>

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